Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Reverse (-)

62727281 .. 62729085

Gene Structure 1805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGAGGCGGCGTGATGAGGACGGCGGCGAAGGTGGCGGGGATCGGCAGCGTCATGCACGGCGGGCTGCGCGGCTCGCCGGCGGTTCCGTCGTCCGGGAAGTCGGTGCGGACGGCCTCGATCCCCGTCGCGGCGGGGATATCGGCGCAGAGCGGTAAGGGGGGTGATAATAGGTCGGCGATCGAGAAGCCGTTGCTGGAGGTGACGACGGCGGAGGACTGGCAATTGGTCGGCGAGGGGGAGTTGGTGATGTCGGCCGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCTCCGAGCTTCCAGGAGGCCAAAGAGGCCACCGACGAGTTGAAAGATGCTCTGGATAAGGCATACCTATCTTCACCCAAAATTACTGAGCTTGGGGAACTGACTGATGCTGATAAGGTGTCGGGGCTGTCTCAGCTTGCAAACCCTGAGGCAGAGTCCCTTCTTATTACTAGGACTTCAGTGCCACAACATGCTTACCAGGCATTTGAACTGCTGAGTCGAAGTACAGAGGCTCAGAATGTTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCAGTATGAATCTGCTTCAGATTCAGAGGTTTTCAATCCCGTATCATCTAAGGAGATCGTAGAGGAACATGATTCAAGCCAATCTTTTGACCTGGAACGTCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCATTGTCAGCAATTTGTCGACATACATTCAAAACATTTTTGAACCCCCTGCAGATGACAATGGGCCTACCAGAACTGTAATAACATCTGGGTTCATGGGACTGGCAGTTATGGTTGTAATGGTGGTTTTGCTGAAGCGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

32.55

Weight (kDa)

4.71

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	287
AccBSI	CCGCTC	2 cut(s)	153, 293
AccI	GTMKAC	1 cut(s)	794
AccII	CGCG	2 cut(s)	72, 131
AclWI	GGATC	2 cut(s)	50, 115
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	453, 633
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	2 cut(s)	95, 130
AgsI	TTSAA	7 cut(s)	334, 500, 667, 708, 739, 806, 818
AjnI	CCWGG	3 cut(s)	303, 489, 723
AloI	GAACNNNNNNTCC	2 cut(s)	719, 751
AluBI	AGCT	4 cut(s)	300, 382, 427, 763
AluI	AGCT	4 cut(s)	300, 382, 427, 763
Alw26I	GTCTC	2 cut(s)	426, 615
AlwI	GGATC	2 cut(s)	50, 115
AoxI	GGCC	5 cut(s)	114, 255, 309, 318, 839
ApeKI	GCWGC	2 cut(s)	48, 67
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	3 cut(s)	72, 148, 290
AspS9I	GGNCC	1 cut(s)	839
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	4 cut(s)	176, 214, 259, 357
AxyI	CCTNAGG	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	54, 60
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	5 cut(s)	39, 76, 129, 175, 225
BciT130I	CCWGG	3 cut(s)	305, 491, 725
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	426, 615
BfaI	CTAG	2 cut(s)	462, 919
BfmI	CTRYAG	1 cut(s)	825
BfoI	RGCGCY	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	7 cut(s)	10, 27, 49, 68, 73, 132, 291
BlsI	GCNGC	7 cut(s)	11, 28, 50, 69, 74, 133, 292
Bme1390I	CCNGG	4 cut(s)	97, 305, 491, 725
BmgT120I	GGNCC	1 cut(s)	839
BmiI	GGNNCC	2 cut(s)	87, 289
BmrFI	CCNGG	4 cut(s)	97, 305, 491, 725
BmsI	GCATC	3 cut(s)	258, 328, 388
BpmI	CTGGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 130
Bse118I	RCCGGY	2 cut(s)	79, 257
Bse1I	ACTGG	2 cut(s)	224, 882
Bse21I	CCTNAGG	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	305, 491, 725
BseDI	CCNNGG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	95, 130
BseMII	CTCAG	6 cut(s)	369, 429, 437, 497, 539, 647
BseNI	ACTGG	2 cut(s)	224, 882
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	54, 60
Bsh1236I	CGCG	2 cut(s)	72, 131
Bsh1285I	CGRYCG	2 cut(s)	183, 258
BshFI	GGCC	5 cut(s)	116, 257, 311, 320, 841
BshNI	GGYRCC	1 cut(s)	287
BsiEI	CGRYCG	2 cut(s)	183, 258
BsiSI	CCGG	3 cut(s)	80, 96, 258
BslFI	GGGAC	2 cut(s)	433, 888
BslI	CCNNNNNNNGG	2 cut(s)	95, 130
BsmAI	GTCTC	2 cut(s)	426, 615
BsmFI	GGGAC	2 cut(s)	433, 888
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	5 cut(s)	116, 257, 311, 320, 841
Bsp143I	GATC	4 cut(s)	42, 120, 180, 687
BspANI	GGCC	5 cut(s)	116, 257, 311, 320, 841
BspCNI	CTCAG	6 cut(s)	370, 430, 436, 498, 538, 646
BspFNI	CGCG	2 cut(s)	72, 131
BspLI	GGNNCC	2 cut(s)	87, 289
BspMAI	CTGCAG	1 cut(s)	829
BspPI	GGATC	2 cut(s)	50, 115
BspT107I	GGYRCC	1 cut(s)	287
BsrBI	CCGCTC	2 cut(s)	153, 293
BsrFI	RCCGGY	2 cut(s)	79, 257
BsrI	ACTGG	2 cut(s)	224, 882
BssAI	RCCGGY	2 cut(s)	79, 257
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	4 cut(s)	42, 120, 180, 687
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	305, 491, 725
Bst4CI	ACNGT	2 cut(s)	769, 853
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	7 cut(s)	65, 77, 81, 259, 263, 429, 915
BstDEI	CTNAG	7 cut(s)	378, 423, 438, 506, 525, 633, 681
BstFNI	CGCG	2 cut(s)	72, 131
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	3 cut(s)	72, 148, 290
BstKTI	GATC	4 cut(s)	45, 123, 183, 690
BstMAI	GTCTC	2 cut(s)	426, 615
BstMBI	GATC	4 cut(s)	42, 120, 180, 687
BstMCI	CGRYCG	2 cut(s)	183, 258
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 64, 69, 76, 317, 424, 491, 545
BstNI	CCWGG	3 cut(s)	305, 491, 725
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	4 cut(s)	95, 303, 489, 723
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	2 cut(s)	72, 131
BstV1I	GCAGC	2 cut(s)	54, 60
BstXI	CCANNNNNNTGG	1 cut(s)	564
BstZI	CGGCCG	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	5 cut(s)	116, 257, 311, 320, 841
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	7 cut(s)	65, 77, 81, 259, 263, 429, 915
CfoI	GCGC	3 cut(s)	72, 148, 290
Cfr10I	RCCGGY	2 cut(s)	79, 257
Cfr13I	GGNCC	1 cut(s)	839
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	5 cut(s)	55, 482, 604, 701, 871
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	7 cut(s)	378, 423, 438, 506, 525, 633, 681
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	4 cut(s)	44, 122, 182, 689
DpnII	GATC	4 cut(s)	42, 120, 180, 687
EaeI	YGGCCR	1 cut(s)	255
EagI	CGGCCG	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	227
EclXI	CGGCCG	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	141
Eco52I	CGGCCG	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	453, 633
Eco81I	CCTNAGG	1 cut(s)	438
EcoRII	CCWGG	3 cut(s)	303, 489, 723
EcoRV	GATATC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
FaeI	CATG	5 cut(s)	58, 485, 607, 704, 874
FalI	AAGNNNNNCTT	4 cut(s)	700, 732, 747, 779
FaqI	GGGAC	2 cut(s)	433, 888
FatI	CATG	5 cut(s)	54, 481, 603, 700, 870
FauI	CCCGC	3 cut(s)	31, 56, 127
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	7 cut(s)	10, 27, 49, 68, 73, 132, 291
Fsp4HI	GCNGC	7 cut(s)	10, 27, 49, 68, 73, 132, 291
FspBI	CTAG	2 cut(s)	462, 919
GlaI	GCGC	3 cut(s)	71, 147, 289
GluI	GCNGC	7 cut(s)	10, 27, 49, 68, 73, 132, 291
GsuI	CTGGAG	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	5 cut(s)	116, 257, 311, 320, 841
HapII	CCGG	3 cut(s)	80, 96, 258
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	72, 148, 290
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	5 cut(s)	58, 485, 607, 704, 874
Hin6I	GCGC	3 cut(s)	70, 146, 288
HinP1I	GCGC	3 cut(s)	70, 146, 288
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	6 cut(s)	446, 508, 608, 641, 653, 704
HpaII	CCGG	3 cut(s)	80, 96, 258
HphI	GGTGA	4 cut(s)	176, 214, 259, 357
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	4 cut(s)	297, 528, 652, 658
Hpy188III	TCNNGA	3 cut(s)	184, 344, 565
Hpy8I	GTNNAC	1 cut(s)	795
Hpy99I	CGWCG	4 cut(s)	94, 131, 211, 329
HpyAV	CCTTC	2 cut(s)	25, 461
HpyCH4III	ACNGT	2 cut(s)	769, 853
HpyCH4IV	ACGT	1 cut(s)	730
HpyCH4V	TGCA	4 cut(s)	58, 431, 548, 827
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 64, 69, 76, 317, 424, 491, 545
HpyF3I	CTNAG	7 cut(s)	378, 423, 438, 506, 525, 633, 681
HpySE526I	ACGT	1 cut(s)	730
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	58, 485, 607, 704, 874
HspAI	GCGC	3 cut(s)	70, 146, 288
KasI	GGCGCC	1 cut(s)	287
KroI	GCCGGC	2 cut(s)	79, 257
KroNI	GCCGGC	2 cut(s)	81, 259
Kzo9I	GATC	4 cut(s)	42, 120, 180, 687
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	54, 60
LweI	GCATC	3 cut(s)	258, 328, 388
MaeI	CTAG	2 cut(s)	462, 919
MaeII	ACGT	1 cut(s)	730
MaeIII	GTNAC	2 cut(s)	202, 551
MalI	GATC	4 cut(s)	44, 122, 182, 689
MbiI	CCGCTC	2 cut(s)	153, 293
MboI	GATC	4 cut(s)	42, 120, 180, 687
MboII	GAAGA	1 cut(s)	354
MfeI	CAATTG	1 cut(s)	224
MluCI	AATT	6 cut(s)	224, 372, 583, 599, 625, 787
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	3 cut(s)	455, 517, 617
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	2 cut(s)	79, 257
MspI	CCGG	3 cut(s)	80, 96, 258
MspR9I	CCNGG	4 cut(s)	97, 305, 491, 725
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	3 cut(s)	305, 491, 725
MvnI	CGCG	2 cut(s)	72, 131
MwoI	GCNNNNNNNGC	8 cut(s)	35, 64, 69, 76, 317, 424, 491, 545
NaeI	GCCGGC	2 cut(s)	81, 259
NarI	GGCGCC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	42, 120, 180, 687
NgoMIV	GCCGGC	2 cut(s)	79, 257
NlaIII	CATG	5 cut(s)	58, 485, 607, 704, 874
NlaIV	GGNNCC	2 cut(s)	87, 289
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	202, 551
NspI	RCATGY	1 cut(s)	485
PctI	GAATGC	1 cut(s)	574
PdiI	GCCGGC	2 cut(s)	81, 259
PfeI	GAWTC	3 cut(s)	641, 653, 704
PfoI	TCCNGGA	2 cut(s)	95, 303
PkrI	GCNGC	7 cut(s)	11, 28, 50, 69, 74, 133, 292
Ple19I	CGATCG	1 cut(s)	183
PleI	GAGTC	3 cut(s)	454, 516, 616
PluTI	GGCGCC	1 cut(s)	291
PpsI	GAGTC	3 cut(s)	454, 516, 616
Psp6I	CCWGG	3 cut(s)	303, 489, 723
PspGI	CCWGG	3 cut(s)	303, 489, 723
PspN4I	GGNNCC	2 cut(s)	87, 289
PspPI	GGNCC	1 cut(s)	839
PstI	CTGCAG	1 cut(s)	829
PvuI	CGATCG	1 cut(s)	183
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SalI	GTCGAC	1 cut(s)	793
SatI	GCNGC	7 cut(s)	10, 27, 49, 68, 73, 132, 291
Sau3AI	GATC	4 cut(s)	42, 120, 180, 687
Sau96I	GGNCC	1 cut(s)	839
SchI	GAGTC	3 cut(s)	455, 517, 617
ScrFI	CCNGG	4 cut(s)	97, 305, 491, 725
SfaNI	GCATC	3 cut(s)	258, 328, 388
SfcI	CTRYAG	1 cut(s)	825
SfiI	GGCCNNNNNGGCC	1 cut(s)	317
SfoI	GGCGCC	1 cut(s)	289
SgrAI	CRCCGGYG	1 cut(s)	79
Sse9I	AATT	6 cut(s)	224, 372, 583, 599, 625, 787
SspDI	GGCGCC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	462, 919
StyD4I	CCNGG	4 cut(s)	95, 303, 489, 723
TaaI	ACNGT	2 cut(s)	769, 853
TaiI	ACGT	1 cut(s)	733
TaqI	TCGA	5 cut(s)	119, 183, 511, 542, 794
TasI	AATT	6 cut(s)	224, 372, 583, 599, 625, 787
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	5 cut(s)	12, 29, 75, 134, 293
TfiI	GAWTC	3 cut(s)	641, 653, 704
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	2 cut(s)	202, 551
TseI	GCWGC	2 cut(s)	48, 67
Tsp45I	GTSAC	2 cut(s)	202, 551
TspDTI	ATGAA	3 cut(s)	592, 654, 859
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	2 cut(s)	462, 919

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.