Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

8021599 .. 8022298

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGACGGTGGCGAAGGTGGCCAGGATAGGCAGCGTGATGCACGGCGGGCTCCGCAGCTTGCCGGCGGAGGGTGATAGGTCGGCGATTGAGAAGTCGTTGCTGGAGGCAATGACAGAGGACTTTGTGGATTGGCAGGTGGTCGGCGATGGCAGCGGCGGGGAGTTGGTGATGGAGGCCGGCGAGCCGATGCTGAGGATTGTTTCGGGGGATGTGCAGATGGTGTTTACGACGGTGACGATTGAGGTGGTGACCGGGAACTCATTGTTTGGGAAAGTAGGAATTGAAGGGATAGCGGAAGCGACGGGGGTTGGTTTGTCTGTGGTGACATGTGCTATGATTGCTGCTTGGATATCCATAATTGGCGTTTGTGTTGTGTTGCTGGTGACATTGGATTCTAAATTAACCTTGATTTTGATTGAGATTGATATGAAATTGAACTTTGCAAGTCAATGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

16.16

Weight (kDa)

4.51

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
AciI	CCGC	6 cut(s)	48, 55, 68, 156, 159, 296
AcoI	YGGCCR	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	287, 439
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
AoxI	GGCC	2 cut(s)	21, 177
ApeKI	GCWGC	4 cut(s)	33, 57, 153, 344
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	6 cut(s)	86, 181, 247, 262, 337, 397
BalI	TGGCCA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	45, 69, 165, 331
BccI	CCATC	3 cut(s)	143, 166, 214
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	5 cut(s)	34, 58, 154, 157, 345
BlsI	GCNGC	5 cut(s)	35, 59, 155, 158, 346
Bme1390I	CCNGG	2 cut(s)	25, 256
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	25, 256
BmsI	GCATC	2 cut(s)	30, 180
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	2 cut(s)	64, 179
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	45, 69, 165, 331
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	23, 179
BsiSI	CCGG	3 cut(s)	65, 180, 255
BslI	CCNNNNNNNGG	1 cut(s)	71
BsnI	GGCC	2 cut(s)	23, 179
Bsp1286I	GDGCHC	1 cut(s)	54
BspACI	CCGC	6 cut(s)	48, 55, 68, 156, 159, 296
BspANI	GGCC	2 cut(s)	23, 179
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	2 cut(s)	64, 179
BssAI	RCCGGY	2 cut(s)	64, 179
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	10, 235
BstC8I	GCNNGC	5 cut(s)	50, 62, 66, 181, 185
BstDEI	CTNAG	1 cut(s)	194
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 153, 341
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	333
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	23, 254
BstV1I	GCAGC	4 cut(s)	45, 69, 165, 331
BsuRI	GGCC	2 cut(s)	23, 179
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	5 cut(s)	50, 62, 66, 181, 185
Cfr10I	RCCGGY	2 cut(s)	64, 179
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	5 cut(s)	23, 52, 60, 179, 187
CviKI_1	RGCY	5 cut(s)	23, 52, 60, 179, 187
DdeI	CTNAG	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	54
Eco32I	GATATC	1 cut(s)	354
Eco91I	GGTNACC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	333
FaiI	YATR	4 cut(s)	331, 338, 359, 431
FatI	CATG	1 cut(s)	329
FauI	CCCGC	2 cut(s)	41, 152
Fnu4HI	GCNGC	5 cut(s)	34, 58, 154, 157, 345
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	5 cut(s)	34, 58, 154, 157, 345
GluI	GCNGC	5 cut(s)	34, 58, 154, 157, 345
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	23, 179
HapII	CCGG	3 cut(s)	65, 180, 255
Hin1II	CATG	1 cut(s)	333
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	3 cut(s)	65, 180, 255
HphI	GGTGA	6 cut(s)	86, 181, 247, 262, 337, 397
Hpy166II	GTNNAC	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	2 cut(s)	235, 307
HpyAV	CCTTC	2 cut(s)	10, 281
HpyCH4III	ACNGT	2 cut(s)	10, 235
HpyCH4V	TGCA	3 cut(s)	43, 217, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 153, 341
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	333
KroI	GCCGGC	2 cut(s)	64, 179
KroNI	GCCGGC	2 cut(s)	66, 181
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	8 cut(s)	10, 37, 78, 89, 122, 193, 268, 368
Lsp1109I	GCAGC	4 cut(s)	45, 69, 165, 331
LweI	GCATC	2 cut(s)	30, 180
MaeIII	GTNAC	4 cut(s)	235, 250, 325, 385
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	282, 360, 401, 434
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	6 cut(s)	64, 100, 112, 169, 189, 238
Mox20I	TGGCCA	1 cut(s)	23
MroNI	GCCGGC	2 cut(s)	64, 179
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	65, 180, 255
MspR9I	CCNGG	2 cut(s)	25, 256
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 153, 341
NaeI	GCCGGC	2 cut(s)	66, 181
NciI	CCSGG	1 cut(s)	256
NgoMIV	GCCGGC	2 cut(s)	64, 179
NlaIII	CATG	1 cut(s)	333
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	4 cut(s)	235, 250, 325, 385
NspI	RCATGY	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PdiI	GCCGGC	2 cut(s)	66, 181
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	5 cut(s)	35, 59, 155, 158, 346
PscI	ACATGT	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	5 cut(s)	34, 58, 154, 157, 345
ScrFI	CCNGG	2 cut(s)	25, 256
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	6 cut(s)	21, 62, 83, 141, 249, 410
SfaNI	GCATC	2 cut(s)	30, 180
Sse9I	AATT	4 cut(s)	282, 360, 401, 434
SsiI	CCGC	6 cut(s)	48, 55, 68, 156, 159, 296
StyD4I	CCNGG	2 cut(s)	23, 254
TaaI	ACNGT	2 cut(s)	10, 235
TasI	AATT	4 cut(s)	282, 360, 401, 434
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseFI	GTSAC	4 cut(s)	235, 250, 325, 385
TseI	GCWGC	4 cut(s)	33, 57, 153, 344
Tsp45I	GTSAC	4 cut(s)	235, 250, 325, 385
TspDTI	ATGAA	1 cut(s)	446
XceI	RCATGY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.