Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

7920808 .. 7921339

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011241

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGACGGTGGTGAAGGTGGCCAGGATCGACAGCGTGATGCACGGCGAGCTTCGCAACTCACCAGCGGTTCCATCATCTGGGAAGTCTATGCGGACAGCCTCGATCCCCATCGCTGCAGGGATATCGGCGCACAGCGTTAAGGGGGGTGATAGGTCAGTGATCGAGAAGTCGTTGCTGGAGGCGACTACGGAGGACTTTGTGGACTGGCAGGTGGTCGGCGATGGTGGCGGCGGGGAGATGGTGATGGAGGCCGGCGAGCCGATGCGGACGATTGTTTCGGGATATGGGGGATGTGCAGGTGGTGTTTGCGACAATGACGATGGAGGTGGTGACCGGGAACTCGTTGTTCGGGAAAGTAGGAACGGAAGGGATAGCGGAAGCGGCCGACGAGGGTTGGTTTGGCTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.3

Weight (kDa)

5.69

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	202, 290
Acc36I	ACCTGC	2 cut(s)	202, 290
AccB7I	CCANNNNNTGG	1 cut(s)	80
AciI	CCGC	7 cut(s)	68, 94, 231, 234, 268, 378, 384
AclWI	GGATC	2 cut(s)	35, 100
AcoI	YGGCCR	2 cut(s)	21, 385
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
AlwI	GGATC	2 cut(s)	35, 100
AoxI	GGCC	3 cut(s)	21, 252, 385
ApeKI	GCWGC	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AspLEI	GCGC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	5 cut(s)	25, 54, 161, 256, 344
BalI	TGGCCA	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	6 cut(s)	82, 119, 218, 235, 241, 317
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	2 cut(s)	202, 290
BisI	GCNGC	3 cut(s)	117, 232, 385
BlsI	GCNGC	3 cut(s)	118, 233, 386
Bme1390I	CCNGG	2 cut(s)	25, 338
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	25, 338
BmsI	GCATC	2 cut(s)	30, 255
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	299
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	212
BseX3I	CGGCCG	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	23, 254, 387
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	255, 337
BslI	CCNNNNNNNGG	1 cut(s)	80
BsnI	GGCC	3 cut(s)	23, 254, 387
Bsp143I	GATC	3 cut(s)	27, 105, 162
BspACI	CCGC	7 cut(s)	68, 94, 231, 234, 268, 378, 384
BspANI	GGCC	3 cut(s)	23, 254, 387
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	2 cut(s)	202, 290
BspPI	GGATC	2 cut(s)	35, 100
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	3 cut(s)	27, 105, 162
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	10, 411
BstC8I	GCNNGC	3 cut(s)	50, 256, 260
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	3 cut(s)	30, 108, 165
BstMBI	GATC	3 cut(s)	27, 105, 162
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 54, 228, 384
BstNI	CCWGG	1 cut(s)	25
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	23, 336
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	103
BstZI	CGGCCG	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	23, 254, 387
BtgZI	GCGATG	2 cut(s)	97, 237
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	2 cut(s)	202, 290
Cac8I	GCNNGC	3 cut(s)	50, 256, 260
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	254
CviJI	RGCY	7 cut(s)	23, 52, 101, 254, 262, 387, 406
CviKI_1	RGCY	7 cut(s)	23, 52, 101, 254, 262, 387, 406
DpnI	GATC	3 cut(s)	29, 107, 164
DpnII	GATC	3 cut(s)	27, 105, 162
EaeI	YGGCCR	2 cut(s)	21, 385
EagI	CGGCCG	1 cut(s)	385
EclXI	CGGCCG	1 cut(s)	385
Eco32I	GATATC	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	332
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	126
FaiI	YATR	2 cut(s)	92, 288
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	117, 232, 385
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	117, 232, 385
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	117, 232, 385
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	23, 254, 387
HapII	CCGG	2 cut(s)	255, 337
HhaI	GCGC	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	255, 337
HphI	GGTGA	5 cut(s)	25, 54, 161, 256, 344
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	3 cut(s)	166, 282, 353
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	10, 363
HpyCH4III	ACNGT	2 cut(s)	10, 411
HpyCH4V	TGCA	3 cut(s)	43, 119, 299
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 54, 228, 384
HspAI	GCGC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	27, 105, 162
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	2 cut(s)	30, 255
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	29, 107, 164
MboI	GATC	3 cut(s)	27, 105, 162
MlsI	TGGCCA	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	6 cut(s)	112, 175, 187, 244, 320, 386
Mox20I	TGGCCA	1 cut(s)	23
MroNI	GCCGGC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	255, 337
MspR9I	CCNGG	2 cut(s)	25, 338
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	4 cut(s)	49, 54, 228, 384
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	3 cut(s)	27, 105, 162
NgoMIV	GCCGGC	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	332
PaqCI	CACCTGC	2 cut(s)	202, 290
PdiI	GCCGGC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	118, 233, 386
Psp6I	CCWGG	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	3 cut(s)	117, 232, 385
Sau3AI	GATC	3 cut(s)	27, 105, 162
ScrFI	CCNGG	2 cut(s)	25, 338
SetI	ASST	6 cut(s)	21, 54, 158, 216, 304, 331
SfaNI	GCATC	2 cut(s)	30, 255
SfcI	CTRYAG	1 cut(s)	117
SsiI	CCGC	7 cut(s)	68, 94, 231, 234, 268, 378, 384
StyD4I	CCNGG	2 cut(s)	23, 336
TaaI	ACNGT	2 cut(s)	10, 411
TaqI	TCGA	3 cut(s)	30, 104, 165
TauI	GCSGC	2 cut(s)	234, 387
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	332
TspGWI	ACGGA	2 cut(s)	206, 381
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.