Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Reverse (-)

64764420 .. 64765190

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG426000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAGGACGGCGGCGAAGGTAGCCGAGATCAGTAGCGTGATGCACGGCAGGCTCCGCAGCTCGCCGGCAGTTCTGTCATCTGGGAAGTCCATGCAGACAACCTCGATCCCCGTCGCGGCAGGGATATCGGGGCACAGCATTAAAGGGGGTGATAGGTTGGTGATCGAGAAGTCGTTGCTGGAGGCGACGATGGAGGACTTTGTGGACTGGCAGGTGGTCGGCGATGGCGGCGGCGGGGAGTTGGTGATGGAGGCCGGCGAGCCGATGCCGAGGATTGTTTCAGGATCTGGGGGATGTGCCAGTGGTGTTTGCGACGGTGACGATGAAGGTGGTGATCGGGAACTCGTTGTTCGGGAAAGTAGGAACGGAAGGGATATCGGAAGCGGCGGGGGTTGGTTTGGCTACGGTGACATGTGCTATGATTGCTGCTTGGATATCCATAATTGGGGTTTGTGTTGTGTTGCTGGTGACATTGGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

16.56

Weight (kDa)

4.6

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AccII	CGCG	1 cut(s)	116
AciI	CCGC	8 cut(s)	11, 55, 116, 228, 231, 234, 384, 387
AclWI	GGATC	2 cut(s)	100, 292
AfiI	CCNNNNNNNGG	2 cut(s)	115, 445
AflIII	ACRYGT	1 cut(s)	411
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
AlwI	GGATC	2 cut(s)	100, 292
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	57, 426
AsuHPI	GGTGA	7 cut(s)	161, 172, 256, 329, 344, 419, 479
BaeGI	GKGCMC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	69, 413
BccI	CCATC	3 cut(s)	184, 218, 241
BceAI	ACGGC	2 cut(s)	24, 61
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	7 cut(s)	12, 58, 117, 229, 232, 385, 427
BlsI	GCNGC	7 cut(s)	13, 59, 118, 230, 233, 386, 428
BmiI	GGNNCC	1 cut(s)	53
BmsI	GCATC	2 cut(s)	30, 255
BpmI	CTGGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 445
Bse118I	RCCGGY	2 cut(s)	64, 254
Bse1I	ACTGG	2 cut(s)	212, 300
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	115, 445
BseNI	ACTGG	2 cut(s)	212, 300
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	69, 413
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	65, 255
BslI	CCNNNNNNNGG	2 cut(s)	115, 445
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	5 cut(s)	27, 105, 162, 284, 334
BspACI	CCGC	8 cut(s)	11, 55, 116, 228, 231, 234, 384, 387
BspANI	GGCC	1 cut(s)	254
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	100, 292
BsrFI	RCCGGY	2 cut(s)	64, 254
BsrI	ACTGG	2 cut(s)	212, 300
BssAI	RCCGGY	2 cut(s)	64, 254
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	5 cut(s)	27, 105, 162, 284, 334
Bst4CI	ACNGT	2 cut(s)	317, 407
BstC8I	GCNNGC	5 cut(s)	50, 62, 66, 256, 260
BstF5I	GGATG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	116
BstKTI	GATC	5 cut(s)	30, 108, 165, 287, 337
BstMBI	GATC	5 cut(s)	27, 105, 162, 284, 334
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 228, 423
BstNSI	RCATGY	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	69, 413
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	5 cut(s)	50, 62, 66, 256, 260
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr10I	RCCGGY	2 cut(s)	64, 254
CviAII	CATG	2 cut(s)	91, 412
CviJI	RGCY	6 cut(s)	23, 52, 60, 254, 262, 402
CviKI_1	RGCY	6 cut(s)	23, 52, 60, 254, 262, 402
DpnI	GATC	5 cut(s)	29, 107, 164, 286, 336
DpnII	GATC	5 cut(s)	27, 105, 162, 284, 334
Eco32I	GATATC	3 cut(s)	126, 376, 436
EcoRV	GATATC	3 cut(s)	126, 376, 436
FaeI	CATG	2 cut(s)	94, 415
FaiI	YATR	4 cut(s)	92, 413, 420, 441
FatI	CATG	2 cut(s)	90, 411
FauI	CCCGC	2 cut(s)	227, 380
Fnu4HI	GCNGC	7 cut(s)	12, 58, 117, 229, 232, 385, 427
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	7 cut(s)	12, 58, 117, 229, 232, 385, 427
GluI	GCNGC	7 cut(s)	12, 58, 117, 229, 232, 385, 427
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	65, 255
Hin1II	CATG	2 cut(s)	94, 415
HinfI	GANTC	1 cut(s)	477
HpaII	CCGG	2 cut(s)	65, 255
HphI	GGTGA	7 cut(s)	161, 172, 256, 329, 344, 419, 479
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	4 cut(s)	166, 282, 338, 353
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	3 cut(s)	116, 190, 317
HpyAV	CCTTC	3 cut(s)	10, 320, 363
HpyCH4III	ACNGT	2 cut(s)	317, 407
HpyCH4V	TGCA	2 cut(s)	43, 94
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 228, 423
Hsp92II	CATG	2 cut(s)	94, 415
KroI	GCCGGC	2 cut(s)	64, 254
KroNI	GCCGGC	2 cut(s)	66, 256
Kzo9I	GATC	5 cut(s)	27, 105, 162, 284, 334
LmnI	GCTCC	1 cut(s)	57
Lsp1109I	GCAGC	2 cut(s)	69, 413
LweI	GCATC	2 cut(s)	30, 255
MaeIII	GTNAC	3 cut(s)	317, 407, 467
MalI	GATC	5 cut(s)	29, 107, 164, 286, 336
MboI	GATC	5 cut(s)	27, 105, 162, 284, 334
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	442
MnlI	CCTC	5 cut(s)	112, 175, 187, 244, 264
MroNI	GCCGGC	2 cut(s)	64, 254
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	65, 255
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	20, 49, 54, 228, 423
NaeI	GCCGGC	2 cut(s)	66, 256
NdeII	GATC	5 cut(s)	27, 105, 162, 284, 334
NgoMIV	GCCGGC	2 cut(s)	64, 254
NlaIII	CATG	2 cut(s)	94, 415
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	2 cut(s)	49, 294
NmuCI	GTSAC	3 cut(s)	317, 407, 467
NspI	RCATGY	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	411
PdiI	GCCGGC	2 cut(s)	66, 256
PfeI	GAWTC	1 cut(s)	477
PkrI	GCNGC	7 cut(s)	13, 59, 118, 230, 233, 386, 428
PscI	ACATGT	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	7 cut(s)	12, 58, 117, 229, 232, 385, 427
Sau3AI	GATC	5 cut(s)	27, 105, 162, 284, 334
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	21, 62, 104, 158, 216, 331
SfaNI	GCATC	2 cut(s)	30, 255
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	8 cut(s)	11, 55, 116, 228, 231, 234, 384, 387
TaaI	ACNGT	2 cut(s)	317, 407
TaqI	TCGA	2 cut(s)	104, 165
TasI	AATT	1 cut(s)	442
TauI	GCSGC	5 cut(s)	14, 119, 231, 234, 387
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	317, 407, 467
TseI	GCWGC	2 cut(s)	57, 426
Tsp45I	GTSAC	3 cut(s)	317, 407, 467
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	1 cut(s)	307
XceI	RCATGY	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.