Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

31311940 .. 31313740

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCGAGGGTTGTGTTCGGCGCCGCGCCGAGCTTCCAGGAGGCCAAAGAGGCCACCGACGAGTTGAAAGATGCTCTGGATAAGGCATACCTATCTTCACCCACAATTACTGAGCTTGGGGAACTGACTGCTGCTGATAAGGTGTCGGGGCTGTCTCAGCTTTCAAACCCTGAGGCAGAGTCCCTTCTTATTACTAGGACTTCAGTGCCACAACATGCTTACCAGGCATTTGAATTGCTGAGTCGAAGTACTGAGGCTCAGAATGTTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCGGTATGAATCTGCTTCAGATTCAGAGGTTTTCAATCCCGTATCGGAGATCGTAGAGGAACATGATTCAAGCCAATCTTTTGACCTGGAACGTCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCATTGTCAGCAATTTGTCGACATACATTCAAAACATTTTTGAACCCCCTGCAGATGACAATGGGCCTACCAAAACTTTAATAGCATCTGGGTTCATGGGACTGGCAGTTATGGTTGTAATGGTGGTTTTGCTGAAGCGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.53

Weight (kDa)

4.46

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	521
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	24, 323
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	186, 366
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	250
AgsI	TTSAA	8 cut(s)	67, 165, 233, 400, 435, 466, 533, 545
AjnI	CCWGG	3 cut(s)	36, 222, 450
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	33, 115, 160, 490
AluI	AGCT	4 cut(s)	33, 115, 160, 490
Alw26I	GTCTC	2 cut(s)	159, 348
AoxI	GGCC	3 cut(s)	42, 51, 566
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	23, 28
AspS9I	GGNCC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	3 cut(s)	38, 224, 452
BcoDI	GTCTC	2 cut(s)	159, 348
BfaI	CTAG	2 cut(s)	195, 646
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	24, 132
BlsI	GCNGC	2 cut(s)	25, 133
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	3 cut(s)	38, 224, 452
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	3 cut(s)	38, 224, 452
BmsI	GCATC	2 cut(s)	61, 596
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	609
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	3 cut(s)	38, 224, 452
BseDI	CCNNGG	1 cut(s)	5
BseMII	CTCAG	6 cut(s)	102, 162, 170, 230, 243, 272
BseNI	ACTGG	1 cut(s)	609
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	44, 53, 568
BshNI	GGYRCC	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	166, 615
BsmAI	GTCTC	2 cut(s)	159, 348
BsmFI	GGGAC	2 cut(s)	166, 615
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	44, 53, 568
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	24, 323
BspANI	GGCC	3 cut(s)	44, 53, 568
BspCNI	CTCAG	6 cut(s)	103, 163, 169, 231, 244, 271
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	22
BspMAI	CTGCAG	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	38, 224, 452
Bst4CI	ACNGT	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	6 cut(s)	111, 156, 171, 239, 252, 258
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 28
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	2 cut(s)	159, 348
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 157, 224, 278
BstNI	CCWGG	3 cut(s)	38, 224, 452
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	36, 222, 450
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	44, 53, 568
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	642
CfoI	GCGC	2 cut(s)	23, 28
Cfr13I	GGNCC	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	4 cut(s)	215, 337, 428, 598
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	6 cut(s)	111, 156, 171, 239, 252, 258
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eco57I	CTGAAG	2 cut(s)	186, 366
Eco81I	CCTNAGG	1 cut(s)	171
EcoRII	CCWGG	3 cut(s)	36, 222, 450
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	4 cut(s)	218, 340, 431, 601
FalI	AAGNNNNNCTT	4 cut(s)	427, 459, 474, 506
FaqI	GGGAC	2 cut(s)	166, 615
FatI	CATG	4 cut(s)	214, 336, 427, 597
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	2 cut(s)	24, 132
Fsp4HI	GCNGC	2 cut(s)	24, 132
FspBI	CTAG	2 cut(s)	195, 646
GlaI	GCGC	2 cut(s)	22, 27
GluI	GCNGC	2 cut(s)	24, 132
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	44, 53, 568
HhaI	GCGC	2 cut(s)	23, 28
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	218, 340, 431, 601
Hin6I	GCGC	2 cut(s)	21, 26
HinP1I	GCGC	2 cut(s)	21, 26
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	6 cut(s)	179, 241, 341, 374, 386, 431
HphI	GGTGA	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	4 cut(s)	261, 385, 391, 412
Hpy188III	TCNNGA	2 cut(s)	77, 298
Hpy8I	GTNNAC	1 cut(s)	522
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	2 cut(s)	281, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 157, 224, 278
HpyF3I	CTNAG	6 cut(s)	111, 156, 171, 239, 252, 258
HpySE526I	ACGT	1 cut(s)	457
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	218, 340, 431, 601
HspAI	GCGC	2 cut(s)	21, 26
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	61, 596
MaeI	CTAG	2 cut(s)	195, 646
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	1 cut(s)	87
MluCI	AATT	6 cut(s)	105, 233, 316, 332, 358, 514
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	3 cut(s)	188, 250, 350
MnlI	CCTC	6 cut(s)	34, 43, 166, 247, 385, 415
MseI	TTAA	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	38, 224, 452
MteI	GCGCNGCGC	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	38, 224, 452
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	50, 157, 224, 278
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	4 cut(s)	218, 340, 431, 601
NlaIV	GGNNCC	1 cut(s)	22
NmeAIII	GCCGAG	2 cut(s)	30, 54
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	218
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	374, 386, 431
PfoI	TCCNGGA	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	25, 133
PleI	GAGTC	3 cut(s)	187, 249, 349
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	3 cut(s)	187, 249, 349
Psp6I	CCWGG	3 cut(s)	36, 222, 450
PspGI	CCWGG	3 cut(s)	36, 222, 450
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	581
SatI	GCNGC	2 cut(s)	24, 132
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	1 cut(s)	566
ScaI	AGTACT	1 cut(s)	250
SchI	GAGTC	3 cut(s)	188, 250, 350
ScrFI	CCNGG	3 cut(s)	38, 224, 452
SetI	ASST	9 cut(s)	35, 93, 117, 144, 162, 396, 453, 460, 492
SfaNI	GCATC	2 cut(s)	61, 596
SfcI	CTRYAG	1 cut(s)	552
SfiI	GGCCNNNNNGGCC	1 cut(s)	50
SfoI	GGCGCC	1 cut(s)	22
Sse9I	AATT	6 cut(s)	105, 233, 316, 332, 358, 514
SsiI	CCGC	2 cut(s)	24, 323
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	195, 646
StyD4I	CCNGG	3 cut(s)	36, 222, 450
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	244, 275, 521
TasI	AATT	6 cut(s)	105, 233, 316, 332, 358, 514
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	374, 386, 431
Tru1I	TTAA	1 cut(s)	581
Tru9I	TTAA	1 cut(s)	581
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	3 cut(s)	325, 387, 586
TspRI	CASTG	1 cut(s)	210
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	2 cut(s)	195, 646
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.