Rh5CG285500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006631
Physical Location & Seq
Forward (+)
31348841 .. 31350770
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG285500.1

Sequence Viewer

Length: 921 bp
ATGGGAGGCGGCGTGATGAGGACGGCGGCGAAGGTGGCCGGGATCGGCAGCGTCATGCACGGCGGGCTGCGCGGCTCTCCGGCGGTTCCGTCGCCCGGGAAGTCGGTGCGGACGGCCTCGATCCCCGTCGCGGCGGGCATATCGGCGCAGAGCGGCAAGGGGAGTGATAGGTCGGCGATCGAGAAGCCGTTGCTGGAGGCGACGACGGCGGAGGACTGGCAACTAGTGGTCGGCGAGGGGGAGTTGGTGATGTCGGCCGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCTCCGAGCTTCCAGGAGGCCAAAGAGGCCACCGACGAGTTGAAAGATGCCCTGGATAAGGCATACCTATCTTCACCCAAAATTACTGAGCTTGGGGAACTGACTGCTGCTGATAAGGTGTCGGGGCTGTCTCAGCTTTCAAACCCTGAGGCAGAGTCCCTTCTTATTCCTAGGACTTCAGTGCCACAACATGCTTACCAGGCATTTGAACTGCTGAGTCGAAGTACTGAGGCTCAGAATGTTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCGGTATGAATCTGCTTCAGATTCGGAGGTTTTCAATCCCGTATCATCTAAGGAGATCGTAGAGGATCATGATTCAAGCCAATCTTTTGACCTGGAACGTCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCATTGTCAGCAATTTGTCGACATACATTCAAAGCATTTTTGGACCCCCTGCTGATGACAATGGGCCTACCAGAACTGCAATAACATCTGGATTCATGGGACTGGCAGTTATGGTTGTAATGGTGGTTTTGATGAAGCGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

32.42

Weight (kDa)

4.85

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccBSI CCGCTC 2 cut(s) 153, 293
AccI GTMKAC 1 cut(s) 794
AccII CGCG 2 cut(s) 72, 131
AclWI GGATC 3 cut(s) 50, 115, 705
AcoI YGGCCR 2 cut(s) 36, 255
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 2 cut(s) 453, 633
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 3 cut(s) 95, 130, 349
AgsI TTSAA 7 cut(s) 334, 432, 500, 667, 708, 739, 806
AhlI ACTAGT 1 cut(s) 223
AjnI CCWGG 4 cut(s) 303, 342, 489, 723
AloI GAACNNNNNNTCC 2 cut(s) 719, 751
AluBI AGCT 4 cut(s) 300, 382, 427, 763
AluI AGCT 4 cut(s) 300, 382, 427, 763
Alw26I GTCTC 2 cut(s) 426, 615
AlwI GGATC 3 cut(s) 50, 115, 705
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 6 cut(s) 36, 114, 255, 309, 318, 839
ApeKI GCWGC 3 cut(s) 48, 67, 398
ApoI RAATTY 1 cut(s) 583
AspA2I CCTAGG 1 cut(s) 461
AspLEI GCGC 3 cut(s) 72, 148, 290
AspS9I GGNCC 2 cut(s) 818, 839
AsuC2I CCSGG 3 cut(s) 40, 96, 97
AsuHPI GGTGA 2 cut(s) 259, 357
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 818
AvrII CCTAGG 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 438
BanI GGYRCC 1 cut(s) 287
BbvI GCAGC 3 cut(s) 54, 60, 385
BccI CCATC 1 cut(s) 571
BceAI ACGGC 5 cut(s) 39, 76, 129, 172, 222
BciT130I CCWGG 4 cut(s) 305, 344, 491, 725
BcnI CCSGG 3 cut(s) 40, 96, 97
BcoDI GTCTC 2 cut(s) 426, 615
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 3 cut(s) 224, 462, 919
BfoI RGCGCY 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 154, 291, 399
BlnI CCTAGG 1 cut(s) 461
BlsI GCNGC 9 cut(s) 11, 28, 50, 69, 74, 133, 155, 292, 400
BmcAI AGTACT 1 cut(s) 517
Bme1390I CCNGG 7 cut(s) 40, 96, 97, 305, 344, 491, 725
Bme18I GGWCC 1 cut(s) 818
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 818, 839
BmiI GGNNCC 3 cut(s) 87, 289, 820
BmrFI CCNGG 7 cut(s) 40, 96, 97, 305, 344, 491, 725
BmsI GCATC 2 cut(s) 258, 328
BpmI CTGGAG 1 cut(s) 215
BpuMI CCSGG 3 cut(s) 40, 96, 97
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 4 cut(s) 95, 272, 342, 461
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 130, 349
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 221, 882
Bse21I CCTNAGG 1 cut(s) 438
BseBI CCWGG 4 cut(s) 305, 344, 491, 725
BseDI CCNNGG 4 cut(s) 95, 272, 342, 461
BseLI CCNNNNNNNGG 3 cut(s) 95, 130, 349
BseMII CTCAG 6 cut(s) 369, 429, 437, 497, 510, 539
BseNI ACTGG 2 cut(s) 221, 882
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 3 cut(s) 54, 60, 385
Bsh1236I CGCG 2 cut(s) 72, 131
Bsh1285I CGRYCG 2 cut(s) 180, 258
BshFI GGCC 6 cut(s) 38, 116, 257, 311, 320, 841
BshNI GGYRCC 1 cut(s) 287
BsiEI CGRYCG 2 cut(s) 180, 258
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 4 cut(s) 39, 80, 96, 258
BslFI GGGAC 2 cut(s) 433, 888
BslI CCNNNNNNNGG 3 cut(s) 95, 130, 349
BsmAI GTCTC 2 cut(s) 426, 615
BsmFI GGGAC 2 cut(s) 433, 888
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 6 cut(s) 38, 116, 257, 311, 320, 841
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 5 cut(s) 42, 120, 177, 687, 697
BspANI GGCC 6 cut(s) 38, 116, 257, 311, 320, 841
BspCNI CTCAG 6 cut(s) 370, 430, 436, 498, 511, 538
BspFNI CGCG 2 cut(s) 72, 131
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 3 cut(s) 87, 289, 820
BspPI GGATC 3 cut(s) 50, 115, 705
BspT107I GGYRCC 1 cut(s) 287
BsrBI CCGCTC 2 cut(s) 153, 293
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 2 cut(s) 221, 882
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 4 cut(s) 95, 272, 342, 461
BssMI GATC 5 cut(s) 42, 120, 177, 687, 697
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 4 cut(s) 305, 344, 491, 725
Bst4CI ACNGT 1 cut(s) 769
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 5 cut(s) 65, 136, 259, 263, 915
BstDEI CTNAG 7 cut(s) 378, 423, 438, 506, 519, 525, 681
BstENI CCTNNNNNAGG 1 cut(s) 347
BstFNI CGCG 2 cut(s) 72, 131
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 3 cut(s) 72, 148, 290
BstKTI GATC 5 cut(s) 45, 123, 180, 690, 700
BstMAI GTCTC 2 cut(s) 426, 615
BstMBI GATC 5 cut(s) 42, 120, 177, 687, 697
BstMCI CGRYCG 2 cut(s) 180, 258
BstMWI GCNNNNNNNGC 8 cut(s) 35, 64, 69, 206, 317, 424, 491, 545
BstNI CCWGG 4 cut(s) 305, 344, 491, 725
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 7 cut(s) 38, 94, 95, 303, 342, 489, 723
BstUI CGCG 2 cut(s) 72, 131
BstV1I GCAGC 3 cut(s) 54, 60, 385
BstXI CCANNNNNNTGG 1 cut(s) 564
BstZI CGGCCG 1 cut(s) 255
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 6 cut(s) 38, 116, 257, 311, 320, 841
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 5 cut(s) 65, 136, 259, 263, 915
CciI TCATGA 1 cut(s) 700
CfoI GCGC 3 cut(s) 72, 148, 290
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 818, 839
Cfr9I CCCGGG 1 cut(s) 95
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 516
CviAII CATG 5 cut(s) 55, 482, 604, 701, 871
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 7 cut(s) 378, 423, 438, 506, 519, 525, 681
DinI GGCGCC 1 cut(s) 289
DpnI GATC 5 cut(s) 44, 122, 179, 689, 699
DpnII GATC 5 cut(s) 42, 120, 177, 687, 697
EaeI YGGCCR 2 cut(s) 36, 255
EagI CGGCCG 1 cut(s) 255
EciI GGCGGA 1 cut(s) 224
EclXI CGGCCG 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 818
Eco52I CGGCCG 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 453, 633
Eco81I CCTNAGG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoRII CCWGG 4 cut(s) 303, 342, 489, 723
EcoT14I CCWWGG 1 cut(s) 461
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 5 cut(s) 58, 485, 607, 704, 874
FalI AAGNNNNNCTT 4 cut(s) 700, 732, 747, 779
FaqI GGGAC 2 cut(s) 433, 888
FatI CATG 5 cut(s) 54, 481, 603, 700, 870
FauI CCCGC 2 cut(s) 56, 127
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 154, 291, 399
Fsp4HI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 154, 291, 399
FspBI CTAG 3 cut(s) 224, 462, 919
GlaI GCGC 3 cut(s) 71, 147, 289
GluI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 154, 291, 399
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 6 cut(s) 38, 116, 257, 311, 320, 841
HapII CCGG 4 cut(s) 39, 80, 96, 258
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 72, 148, 290
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 5 cut(s) 58, 485, 607, 704, 874
Hin6I GCGC 3 cut(s) 70, 146, 288
HinP1I GCGC 3 cut(s) 70, 146, 288
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 7 cut(s) 446, 508, 608, 641, 653, 704, 867
HpaII CCGG 4 cut(s) 39, 80, 96, 258
HphI GGTGA 2 cut(s) 259, 357
Hpy166II GTNNAC 1 cut(s) 795
Hpy188I TCNGA 4 cut(s) 297, 528, 652, 658
Hpy188III TCNNGA 4 cut(s) 181, 565, 701, 864
Hpy8I GTNNAC 1 cut(s) 795
Hpy99I CGWCG 5 cut(s) 94, 131, 205, 208, 329
HpyAV CCTTC 2 cut(s) 25, 461
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 3 cut(s) 58, 548, 854
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 64, 69, 206, 317, 424, 491, 545
HpyF3I CTNAG 7 cut(s) 378, 423, 438, 506, 519, 525, 681
HpySE526I ACGT 1 cut(s) 730
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 5 cut(s) 58, 485, 607, 704, 874
HspAI GCGC 3 cut(s) 70, 146, 288
KasI GGCGCC 1 cut(s) 287
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
Kzo9I GATC 5 cut(s) 42, 120, 177, 687, 697
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 3 cut(s) 54, 60, 385
LweI GCATC 2 cut(s) 258, 328
MaeI CTAG 3 cut(s) 224, 462, 919
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 1 cut(s) 551
MalI GATC 5 cut(s) 44, 122, 179, 689, 699
MbiI CCGCTC 2 cut(s) 153, 293
MboI GATC 5 cut(s) 42, 120, 177, 687, 697
MboII GAAGA 1 cut(s) 354
MluCI AATT 5 cut(s) 372, 583, 599, 625, 787
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 3 cut(s) 455, 517, 617
MroNI GCCGGC 1 cut(s) 257
MspI CCGG 4 cut(s) 39, 80, 96, 258
MspR9I CCNGG 7 cut(s) 40, 96, 97, 305, 344, 491, 725
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 4 cut(s) 305, 344, 491, 725
MvnI CGCG 2 cut(s) 72, 131
MwoI GCNNNNNNNGC 8 cut(s) 35, 64, 69, 206, 317, 424, 491, 545
NaeI GCCGGC 1 cut(s) 259
NarI GGCGCC 1 cut(s) 288
NciI CCSGG 3 cut(s) 40, 96, 97
NdeII GATC 5 cut(s) 42, 120, 177, 687, 697
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 5 cut(s) 58, 485, 607, 704, 874
NlaIV GGNNCC 3 cut(s) 87, 289, 820
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 1 cut(s) 485
PagI TCATGA 1 cut(s) 700
PctI GAATGC 1 cut(s) 574
PdiI GCCGGC 1 cut(s) 259
PfeI GAWTC 4 cut(s) 641, 653, 704, 867
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 9 cut(s) 11, 28, 50, 69, 74, 133, 155, 292, 400
Ple19I CGATCG 1 cut(s) 180
PleI GAGTC 3 cut(s) 454, 516, 616
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 3 cut(s) 454, 516, 616
Psp6I CCWGG 4 cut(s) 303, 342, 489, 723
PspGI CCWGG 4 cut(s) 303, 342, 489, 723
PspN4I GGNNCC 3 cut(s) 87, 289, 820
PspPI GGNCC 2 cut(s) 818, 839
PvuI CGATCG 1 cut(s) 180
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SalI GTCGAC 1 cut(s) 793
SatI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 154, 291, 399
Sau3AI GATC 5 cut(s) 42, 120, 177, 687, 697
Sau96I GGNCC 2 cut(s) 818, 839
ScaI AGTACT 1 cut(s) 517
SchI GAGTC 3 cut(s) 455, 517, 617
ScrFI CCNGG 7 cut(s) 40, 96, 97, 305, 344, 491, 725
SfaNI GCATC 2 cut(s) 258, 328
SfiI GGCCNNNNNGGCC 1 cut(s) 317
SfoI GGCGCC 1 cut(s) 289
SinI GGWCC 1 cut(s) 818
SmaI CCCGGG 1 cut(s) 97
SpeI ACTAGT 1 cut(s) 223
Sse9I AATT 5 cut(s) 372, 583, 599, 625, 787
SspDI GGCGCC 1 cut(s) 287
SspMI CTAG 3 cut(s) 224, 462, 919
StyD4I CCNGG 7 cut(s) 38, 94, 95, 303, 342, 489, 723
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 1 cut(s) 733
TaqI TCGA 5 cut(s) 119, 180, 511, 542, 794
TasI AATT 5 cut(s) 372, 583, 599, 625, 787
TatI WGTACW 1 cut(s) 515
TauI GCSGC 6 cut(s) 12, 29, 75, 134, 156, 293
TfiI GAWTC 4 cut(s) 641, 653, 704, 867
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 3 cut(s) 48, 67, 398
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 3 cut(s) 592, 654, 859
TspGWI ACGGA 1 cut(s) 78
TspMI CCCGGG 1 cut(s) 95
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 818
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 583
XceI RCATGY 1 cut(s) 485
XmaI CCCGGG 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 794
XspI CTAG 3 cut(s) 224, 462, 919
ZrmI AGTACT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.