Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Reverse (-)

29586501 .. 29588753

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1215500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAGGCAGCGGAGTCATGAGGTCGGTGGCGAAGGTGGCCGGGATCGGCGGCATGATCCGCGGCGCGCCGGCGGTTCCTTCGCCGACTGGTCATTCGGTCCGCAAGGCCTCAATTCCCGTGGCAGCGACCCTCACGGCTCAGAACTACGGTGGAGGTGAAGTGGCAGCGATCGGGAAGCCTGCGTCGGACGCGGTCGATGACTTCGTCGACTGGCAGGTGGTCGGCGCCGGAGAAGATGACCTGGTGATGTCGGGCGGCGAGCCGATGCCGAGGGTTGTCTTCGATGCTGCGCCGAGCTTCAAGGAGGCCAAAGAGGCCACCGCTGAATTGAAAGATGCCCTCGATAAGGTGTATCTTTCTTCGCCCAAATCTACTGATTTGGGGGAACCGTCTGCTGCTGCTGATGCGGCTGGGCTGCCTCTGATAAAAAACCCTGAACCTGAGGAGATGGAATCCCTACTTCTTACTAGGACTTCAGTGCCGAAACATGCTCTTCATGCATTTGAAATGCTGAGTAGATGTTCTGAAGCTCAGAATGTTGTTGCTTCAATTACAAGTGACCCGAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAGCAATTTATGGCCAACAAGAACTATAATCTTTACACGGGAGAGCATGCTGCAGAAACTTATCCAGCTTCACCCAAGAAGCTTGAAGACGAATCAGAGAAATCTGACAGCTTGGAAGATATGCTCGGTGGTTTTATGCAGAAAATCAAGCTTACAGTGGATAAGTGGGTCAATGATTTGTCGTCATTCATCCAGAACATTTTCGAACCCCCTGCAGCTGAAGCTGAAGCAGACGGAGGGAATACAGGTGCGGCTGTAGCATCTGCGTTCATGGGACTGGCGGTTATGGTTGTTATGGTGGTCTTGACGAAGCGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

32.21

Weight (kDa)

4.72

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	3 cut(s)	63, 68, 194
AclWI	GGATC	2 cut(s)	52, 53
AcoI	YGGCCR	2 cut(s)	39, 615
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	4 cut(s)	462, 549, 843, 849
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	5 cut(s)	304, 334, 509, 552, 689
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	8 cut(s)	300, 533, 671, 685, 714, 754, 821, 827
AluI	AGCT	8 cut(s)	300, 533, 671, 685, 714, 754, 821, 827
AlwI	GGATC	2 cut(s)	52, 53
AoxI	GGCC	5 cut(s)	39, 108, 309, 318, 615
ApeKI	GCWGC	9 cut(s)	9, 125, 167, 290, 398, 401, 418, 653, 818
ApoI	RAATTY	1 cut(s)	592
ArsI	GACNNNNNNTTYG	2 cut(s)	79, 111
AscI	GGCGCGCC	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	803
AspLEI	GCGC	4 cut(s)	68, 70, 230, 295
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	3 cut(s)	170, 259, 666
AsuII	TTCGAA	1 cut(s)	807
AvaII	GGWCC	1 cut(s)	100
AxyI	CCTNAGG	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	274, 696
BbvI	GCAGC	9 cut(s)	21, 137, 179, 277, 385, 388, 405, 640, 830
BccI	CCATC	2 cut(s)	445, 580
BceAI	ACGGC	1 cut(s)	153
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	3 cut(s)	654, 816, 858
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	43, 245
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	3 cut(s)	78, 229, 390
BmrFI	CCNGG	2 cut(s)	43, 245
BmsI	GCATC	5 cut(s)	258, 277, 328, 397, 872
BpiI	GAAGAC	2 cut(s)	274, 696
Bpu14I	TTCGAA	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	61, 120, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	94, 218, 885
Bse21I	CCTNAGG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	61, 120, 272
BseGI	GGATG	1 cut(s)	792
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	4 cut(s)	155, 435, 506, 548
BseNI	ACTGG	3 cut(s)	94, 218, 885
BsePI	GCGCGC	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	9 cut(s)	21, 137, 179, 277, 385, 388, 405, 640, 830
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	3 cut(s)	63, 68, 194
Bsh1285I	CGRYCG	2 cut(s)	174, 198
BshFI	GGCC	5 cut(s)	41, 110, 311, 320, 617
BshNI	GGYRCC	1 cut(s)	227
BsiEI	CGRYCG	2 cut(s)	174, 198
BsiSI	CCGG	3 cut(s)	42, 71, 231
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	891
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	5 cut(s)	41, 110, 311, 320, 617
Bsp119I	TTCGAA	1 cut(s)	807
Bsp143I	GATC	3 cut(s)	45, 57, 171
BspANI	GGCC	5 cut(s)	41, 110, 311, 320, 617
BspCNI	CTCAG	4 cut(s)	154, 436, 507, 547
BspFNI	CGCG	3 cut(s)	63, 68, 194
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	78, 229, 390
BspMAI	CTGCAG	2 cut(s)	658, 820
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	52, 53
BspQI	GCTCTTC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	94, 218, 885
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	61, 120, 272
BssHII	GCGCGC	1 cut(s)	66
BssMI	GATC	3 cut(s)	45, 57, 171
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	3 cut(s)	152, 393, 760
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	1 cut(s)	228
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	6 cut(s)	68, 72, 183, 263, 651, 918
BstDEI	CTNAG	5 cut(s)	141, 444, 515, 534, 921
BstDSI	CCRYGG	2 cut(s)	61, 120
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	792
BstFNI	CGCG	3 cut(s)	63, 68, 194
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	4 cut(s)	68, 70, 230, 295
BstKTI	GATC	3 cut(s)	48, 60, 174
BstMBI	GATC	3 cut(s)	45, 57, 171
BstMCI	CGRYCG	2 cut(s)	174, 198
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 60, 191, 317, 407, 410, 500, 824, 860
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	494, 653
BstSCI	CCNGG	2 cut(s)	41, 243
BstSFI	CTRYAG	3 cut(s)	654, 816, 858
BstUI	CGCG	3 cut(s)	63, 68, 194
BstV1I	GCAGC	9 cut(s)	21, 137, 179, 277, 385, 388, 405, 640, 830
BstV2I	GAAGAC	2 cut(s)	274, 696
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	5 cut(s)	41, 110, 311, 320, 617
BtgI	CCRYGG	2 cut(s)	61, 120
BtsCI	GGATG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	486, 765
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	6 cut(s)	68, 72, 183, 263, 651, 918
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	4 cut(s)	68, 70, 230, 295
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	100
Cfr42I	CCGCGG	1 cut(s)	64
CpoI	CGGWCCG	1 cut(s)	100
CseI	GACGC	2 cut(s)	174, 200
CsiI	ACCWGGT	1 cut(s)	243
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CspI	CGGWCCG	1 cut(s)	100
CviAII	CATG	6 cut(s)	19, 55, 491, 500, 650, 874
DdeI	CTNAG	5 cut(s)	141, 444, 515, 534, 921
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	3 cut(s)	47, 59, 173
DpnII	GATC	3 cut(s)	45, 57, 171
EaeI	YGGCCR	2 cut(s)	39, 615
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco147I	AGGCCT	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	4 cut(s)	462, 549, 843, 849
Eco81I	CCTNAGG	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	505
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
FaeI	CATG	6 cut(s)	22, 58, 494, 503, 653, 877
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	6 cut(s)	18, 54, 490, 499, 649, 873
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	1 cut(s)	779
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	4 cut(s)	67, 69, 229, 294
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	5 cut(s)	41, 110, 311, 320, 617
HapII	CCGG	3 cut(s)	42, 71, 231
HgaI	GACGC	2 cut(s)	174, 200
HhaI	GCGC	4 cut(s)	68, 70, 230, 295
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	6 cut(s)	22, 58, 494, 503, 653, 877
Hin6I	GCGC	4 cut(s)	66, 68, 228, 293
HinP1I	GCGC	4 cut(s)	66, 68, 228, 293
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	2 cut(s)	683, 752
HinfI	GANTC	3 cut(s)	15, 455, 695
HpaII	CCGG	3 cut(s)	42, 71, 231
HphI	GGTGA	3 cut(s)	170, 259, 666
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	7 cut(s)	144, 190, 426, 529, 537, 700, 709
Hpy188III	TCNNGA	5 cut(s)	19, 175, 574, 796, 907
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	2 cut(s)	190, 212
HpyAV	CCTTC	2 cut(s)	28, 90
HpyCH4III	ACNGT	3 cut(s)	152, 393, 760
HpyCH4V	TGCA	4 cut(s)	503, 656, 742, 818
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 60, 191, 317, 407, 410, 500, 824, 860
HpyF3I	CTNAG	5 cut(s)	141, 444, 515, 534, 921
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	6 cut(s)	22, 58, 494, 503, 653, 877
HspAI	GCGC	4 cut(s)	66, 68, 228, 293
KasI	GGCGCC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
KspI	CCGCGG	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	45, 57, 171
LguI	GCTCTTC	1 cut(s)	501
Lsp1109I	GCAGC	9 cut(s)	21, 137, 179, 277, 385, 388, 405, 640, 830
LweI	GCATC	5 cut(s)	258, 277, 328, 397, 872
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	3 cut(s)	47, 59, 173
MboI	GATC	3 cut(s)	45, 57, 171
MboII	GAAGA	6 cut(s)	248, 274, 354, 488, 701, 731
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	5 cut(s)	114, 329, 552, 592, 608
MluNI	TGGCCA	1 cut(s)	617
Mly113I	GGCGCC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	168
Mox20I	TGGCCA	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	505
MreI	CGCCGGCG	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	803
MscI	TGGCCA	1 cut(s)	617
Msp20I	TGGCCA	1 cut(s)	617
MspA1I	CMGCKG	4 cut(s)	12, 63, 326, 821
MspI	CCGG	3 cut(s)	42, 71, 231
MspR9I	CCNGG	2 cut(s)	43, 245
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	63, 68, 194
MwoI	GCNNNNNNNGC	9 cut(s)	38, 60, 191, 317, 407, 410, 500, 824, 860
NaeI	GCCGGC	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	3 cut(s)	45, 57, 171
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	6 cut(s)	22, 58, 494, 503, 653, 877
NlaIV	GGNNCC	3 cut(s)	78, 229, 390
NmeAIII	GCCGAG	2 cut(s)	297, 321
NmuCI	GTSAC	1 cut(s)	560
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	2 cut(s)	494, 653
NspV	TTCGAA	1 cut(s)	807
PaeI	GCATGC	1 cut(s)	653
PagI	TCATGA	1 cut(s)	18
PalAI	GGCGCGCC	1 cut(s)	66
PaqCI	CACCTGC	1 cut(s)	208
PauI	GCGCGC	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	583
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	803
PfeI	GAWTC	2 cut(s)	455, 695
PflFI	GACNNNGTC	2 cut(s)	194, 206
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	23
PluTI	GGCGCC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	78, 229, 390
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	2 cut(s)	658, 820
PsyI	GACNNNGTC	2 cut(s)	194, 206
PteI	GCGCGC	1 cut(s)	66
PvuI	CGATCG	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	821
Rsr2I	CGGWCCG	1 cut(s)	100
RsrII	CGGWCCG	1 cut(s)	100
SacII	CCGCGG	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	501
Sau3AI	GATC	3 cut(s)	45, 57, 171
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	43, 245
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	5 cut(s)	258, 277, 328, 397, 872
SfcI	CTRYAG	3 cut(s)	654, 816, 858
SfiI	GGCCNNNNNGGCC	1 cut(s)	317
SfoI	GGCGCC	1 cut(s)	229
Sfr303I	CCGCGG	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	807
SgrAI	CRCCGGYG	1 cut(s)	70
SgrBI	CCGCGG	1 cut(s)	64
SgsI	GGCGCGCC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	100
SphI	GCATGC	1 cut(s)	653
Sse9I	AATT	5 cut(s)	114, 329, 552, 592, 608
SseBI	AGGCCT	1 cut(s)	110
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	41, 243
TaaI	ACNGT	3 cut(s)	152, 393, 760
TaqI	TCGA	5 cut(s)	198, 210, 285, 345, 807
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	5 cut(s)	114, 329, 552, 592, 608
TauI	GCSGC	5 cut(s)	54, 66, 261, 413, 857
TfiI	GAWTC	2 cut(s)	455, 695
TscAI	CASTG	2 cut(s)	486, 765
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	9 cut(s)	9, 125, 167, 290, 398, 401, 418, 653, 818
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	3 cut(s)	488, 781, 862
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	2 cut(s)	486, 765
Tth111I	GACNNNGTC	2 cut(s)	194, 206
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	2 cut(s)	494, 653
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	803
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.