Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Reverse (-)

8412840 .. 8415144

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G070000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACCAATACGGTACTGTTACATCATTAAGGAACCCCAGGTCCTTATTTACATGTCAAGGATCAAGGACCCTCAAGTCTGATCACATGTTTACAAATATAGTACCGGAGAGACTGCCAGCTCTCATATTAACATCATCATCCTTGGATCTTCAAAAAATCCAACCCATCAAACCTGGGCAAGTCACAAGAGTCAGGCTTCCAAGCATACTTGAGGAACTGCTTATCTGGTCTGCCATACTTGATGCAGTTAAACTTAGGATCTATGAAGGGACAGCTGGAAGAATCATAGAGGGGAGCTTGCTCTCAATGGGAGGCGGAGTCATGAGGGCGGCGGCTAAGGTGGCGGGCATCGGCGGCGTTGTTCCCGGCGGCATGCTTCGTGGTGCGCCGGTTCCATCGTCGTCCGGTCAGTCCATCCGAAAGGCCTCGATCCCCGTGGCCGCGACCCTCACGGCTGAGAATGTCGGCGGGGTTGACGTGTCTCCGATCGAGAAGACGGCGTTGGATGCGATGGACGACTTCGTCGACTGCTTCAAGGAGGCCAGAGAGGCCACCACTAAATTGAAGGACGCCCTCGATAAGATATATCTGTCTTCACCCAAATCTACAGAATTTGGGGGGCAGTCTGCTACTGATAAGGTTTCTGGGCTGTCTCAAATTATGAACCCTGAACCTGAGAAGGTGGAATCCCAACGAACCAATCCTGTAGCCCATCAAACGGACGGAAGCCGCGGCCACCATCACCAGCGGCCACAGCGTCAGCATCTGATGGCTGTTGCCGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

28.16

Weight (kDa)

9.1

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	76, 524
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	2 cut(s)	446, 735
AclWI	GGATC	4 cut(s)	70, 156, 269, 427
AcoI	YGGCCR	3 cut(s)	441, 736, 752
AcsI	RAATTY	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	2 cut(s)	16, 105
AfiI	CCNNNNNNNGG	1 cut(s)	721
AflIII	ACRYGT	3 cut(s)	53, 87, 480
AgsI	TTSAA	3 cut(s)	155, 538, 568
AjiI	CACGTC	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	38, 175
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	122, 278, 300
AluI	AGCT	3 cut(s)	122, 278, 300
Alw26I	GTCTC	3 cut(s)	106, 489, 660
AlwI	GGATC	4 cut(s)	70, 156, 269, 427
AlwNI	CAGNNNCTG	1 cut(s)	769
AoxI	GGCC	6 cut(s)	426, 441, 543, 552, 736, 752
ApoI	RAATTY	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	42, 69
AsuC2I	CCSGG	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	591, 737
AvaII	GGWCC	2 cut(s)	42, 69
BbsI	GAAGAC	2 cut(s)	503, 588
BccI	CCATC	7 cut(s)	176, 406, 425, 508, 723, 750, 766
BceAI	ACGGC	2 cut(s)	471, 516
BciT130I	CCWGG	2 cut(s)	40, 177
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	369
BcoDI	GTCTC	3 cut(s)	106, 489, 660
BfmI	CTRYAG	2 cut(s)	609, 708
BglI	GCCNNNNNGGC	1 cut(s)	551
BisI	GCNGC	8 cut(s)	333, 336, 358, 373, 444, 733, 736, 752
BlsI	GCNGC	8 cut(s)	334, 337, 359, 374, 445, 734, 737, 753
Bme1390I	CCNGG	3 cut(s)	40, 177, 369
Bme18I	GGWCC	2 cut(s)	42, 69
BmgBI	CACGTC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	42, 69
BmiI	GGNNCC	3 cut(s)	35, 71, 396
BmrFI	CCNGG	3 cut(s)	40, 177, 369
BmsI	GCATC	4 cut(s)	235, 360, 499, 775
BpiI	GAAGAC	2 cut(s)	503, 588
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	59, 233
BpuMI	CCSGG	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	573
BsaJI	CCNNGG	5 cut(s)	38, 144, 176, 438, 733
BsaWI	WCCGGW	2 cut(s)	106, 407
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	40, 177
BseDI	CCNNGG	5 cut(s)	38, 144, 176, 438, 733
BseGI	GGATG	3 cut(s)	140, 417, 514
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	450, 669
Bsh1236I	CGCG	2 cut(s)	446, 735
Bsh1285I	CGRYCG	1 cut(s)	492
BshFI	GGCC	6 cut(s)	428, 443, 545, 554, 738, 754
BsiEI	CGRYCG	1 cut(s)	492
BsiSI	CCGG	4 cut(s)	107, 369, 392, 408
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	3 cut(s)	106, 489, 660
BsmFI	GGGAC	1 cut(s)	286
BsnI	GGCC	6 cut(s)	428, 443, 545, 554, 738, 754
Bsp143I	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
BspANI	GGCC	6 cut(s)	428, 443, 545, 554, 738, 754
BspCNI	CTCAG	2 cut(s)	451, 670
BspFNI	CGCG	2 cut(s)	446, 735
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	35, 71, 396
BspPI	GGATC	4 cut(s)	70, 156, 269, 427
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	5 cut(s)	38, 144, 176, 438, 733
BssMI	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
BssNI	GRCGYC	1 cut(s)	573
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	40, 177
Bst4CI	ACNGT	2 cut(s)	14, 19
BstACI	GRCGYC	1 cut(s)	573
BstC8I	GCNNGC	4 cut(s)	120, 302, 349, 377
BstDEI	CTNAG	4 cut(s)	257, 339, 459, 678
BstDSI	CCRYGG	2 cut(s)	438, 733
BstF5I	GGATG	3 cut(s)	140, 417, 514
BstFNI	CGCG	2 cut(s)	446, 735
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	6 cut(s)	65, 85, 151, 264, 435, 492
BstMAI	GTCTC	3 cut(s)	106, 489, 660
BstMBI	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
BstMCI	CGRYCG	1 cut(s)	492
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 357, 509, 551, 757
BstNI	CCWGG	2 cut(s)	40, 177
BstNSI	RCATGY	3 cut(s)	57, 91, 379
BstSCI	CCNGG	3 cut(s)	38, 175, 367
BstSFI	CTRYAG	2 cut(s)	609, 708
BstUI	CGCG	2 cut(s)	446, 735
BstV2I	GAAGAC	2 cut(s)	503, 588
BstX2I	RGATCY	2 cut(s)	148, 261
BstYI	RGATCY	2 cut(s)	148, 261
BsuRI	GGCC	6 cut(s)	428, 443, 545, 554, 738, 754
BtgI	CCRYGG	2 cut(s)	438, 733
BtgZI	GCGATG	1 cut(s)	527
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	3 cut(s)	140, 417, 514
Cac8I	GCNNGC	4 cut(s)	120, 302, 349, 377
CaiI	CAGNNNCTG	1 cut(s)	769
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	42, 69
Cfr42I	CCGCGG	1 cut(s)	736
CseI	GACGC	2 cut(s)	581, 749
Csp6I	GTAC	2 cut(s)	15, 104
CviAII	CATG	4 cut(s)	54, 88, 325, 376
CviQI	GTAC	2 cut(s)	15, 104
DdeI	CTNAG	4 cut(s)	257, 339, 459, 678
DpnI	GATC	6 cut(s)	64, 84, 150, 263, 434, 491
DpnII	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
DrdI	GACNNNNNNGTC	2 cut(s)	76, 524
DseDI	GACNNNNNNGTC	2 cut(s)	76, 524
EaeI	YGGCCR	3 cut(s)	441, 736, 752
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	42, 69
EcoO109I	RGGNCCY	2 cut(s)	42, 69
EcoRII	CCWGG	2 cut(s)	38, 175
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	57, 91, 328, 379
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	4 cut(s)	53, 87, 324, 375
FauI	CCCGC	2 cut(s)	340, 464
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	8 cut(s)	333, 336, 358, 373, 444, 733, 736, 752
FokI	GGATG	3 cut(s)	127, 404, 521
Fsp4HI	GCNGC	8 cut(s)	333, 336, 358, 373, 444, 733, 736, 752
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	8 cut(s)	333, 336, 358, 373, 444, 733, 736, 752
HaeIII	GGCC	6 cut(s)	428, 443, 545, 554, 738, 754
HapII	CCGG	4 cut(s)	107, 369, 392, 408
HgaI	GACGC	2 cut(s)	581, 749
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	57, 91, 328, 379
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	2 cut(s)	478, 529
HindII	GTYRAC	2 cut(s)	478, 529
HinfI	GANTC	4 cut(s)	192, 285, 321, 689
HpaII	CCGG	4 cut(s)	107, 369, 392, 408
HphI	GGTGA	2 cut(s)	591, 737
Hpy166II	GTNNAC	3 cut(s)	93, 478, 529
Hpy188I	TCNGA	4 cut(s)	82, 422, 489, 771
Hpy188III	TCNNGA	2 cut(s)	325, 493
Hpy8I	GTNNAC	3 cut(s)	93, 478, 529
Hpy99I	CGWCG	2 cut(s)	406, 530
HpyAV	CCTTC	3 cut(s)	263, 562, 676
HpyCH4III	ACNGT	2 cut(s)	14, 19
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 357, 509, 551, 757
HpyF3I	CTNAG	4 cut(s)	257, 339, 459, 678
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	4 cut(s)	57, 91, 328, 379
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	82
KspI	CCGCGG	1 cut(s)	736
Kzo9I	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
LmnI	GCTCC	1 cut(s)	297
LweI	GCATC	4 cut(s)	235, 360, 499, 775
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	19, 184
MalI	GATC	6 cut(s)	64, 84, 150, 263, 434, 491
MboI	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
MboII	GAAGA	4 cut(s)	143, 294, 508, 588
MflI	RGATCY	2 cut(s)	148, 261
MluCI	AATT	3 cut(s)	563, 614, 660
MlyI	GAGTC	2 cut(s)	201, 330
MmeI	TCCRAC	2 cut(s)	187, 486
MseI	TTAA	3 cut(s)	29, 131, 252
MspA1I	CMGCKG	3 cut(s)	278, 735, 751
MspI	CCGG	4 cut(s)	107, 369, 392, 408
MspR9I	CCNGG	3 cut(s)	40, 177, 369
MvaI	CCWGG	2 cut(s)	40, 177
MvnI	CGCG	2 cut(s)	446, 735
MwoI	GCNNNNNNNGC	5 cut(s)	344, 357, 509, 551, 757
NciI	CCSGG	1 cut(s)	369
NdeII	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
NlaIII	CATG	4 cut(s)	57, 91, 328, 379
NlaIV	GGNNCC	3 cut(s)	35, 71, 396
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	3 cut(s)	57, 91, 379
PaeI	GCATGC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	428
PciI	ACATGT	2 cut(s)	53, 87
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	285, 689
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	8 cut(s)	334, 337, 359, 374, 445, 734, 737, 753
Ple19I	CGATCG	1 cut(s)	492
PleI	GAGTC	2 cut(s)	200, 329
PpsI	GAGTC	2 cut(s)	200, 329
PpuMI	RGGWCCY	2 cut(s)	42, 69
PscI	ACATGT	2 cut(s)	53, 87
Psp5II	RGGWCCY	2 cut(s)	42, 69
Psp6I	CCWGG	2 cut(s)	38, 175
PspGI	CCWGG	2 cut(s)	38, 175
PspN4I	GGNNCC	3 cut(s)	35, 71, 396
PspPI	GGNCC	2 cut(s)	42, 69
PspPPI	RGGWCCY	2 cut(s)	42, 69
PstNI	CAGNNNCTG	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	148, 261
PsyI	GACNNNGTC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	492
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	16, 105
RsaNI	GTAC	2 cut(s)	15, 104
SacII	CCGCGG	1 cut(s)	736
SalI	GTCGAC	1 cut(s)	527
SaqAI	TTAA	3 cut(s)	29, 131, 252
SatI	GCNGC	8 cut(s)	333, 336, 358, 373, 444, 733, 736, 752
Sau3AI	GATC	6 cut(s)	62, 82, 148, 261, 432, 489
Sau96I	GGNCC	2 cut(s)	42, 69
SchI	GAGTC	2 cut(s)	201, 330
ScrFI	CCNGG	3 cut(s)	40, 177, 369
SfaNI	GCATC	4 cut(s)	235, 360, 499, 775
SfcI	CTRYAG	2 cut(s)	609, 708
SfiI	GGCCNNNNNGGCC	1 cut(s)	551
Sfr303I	CCGCGG	1 cut(s)	736
SgrBI	CCGCGG	1 cut(s)	736
SinI	GGWCC	2 cut(s)	42, 69
SmlI	CTYRAG	2 cut(s)	74, 212
SmoI	CTYRAG	2 cut(s)	74, 212
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	3 cut(s)	563, 614, 660
SseBI	AGGCCT	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	3 cut(s)	38, 175, 367
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	14, 19
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	4 cut(s)	431, 492, 528, 579
TasI	AATT	3 cut(s)	563, 614, 660
TauI	GCSGC	8 cut(s)	335, 338, 360, 375, 446, 735, 738, 754
TfiI	GAWTC	2 cut(s)	285, 689
Tru1I	TTAA	3 cut(s)	29, 131, 252
Tru9I	TTAA	3 cut(s)	29, 131, 252
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	17, 282, 680
TspGWI	ACGGA	2 cut(s)	737, 741
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	2 cut(s)	42, 69
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	3 cut(s)	57, 91, 379
XmiI	GTMKAC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.