Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

14829009 .. 14829714

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGAGGTTCCCAGGGGCATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCATATGGCTGCTGCTGGGGAAGCCATTGTATTGTTAGAAAGCCTATTGCAGGTAATGTTACTCCAGGACAGACAAGAAGTTTATCTCTTGACATTGCTAAATTTGATATTAAATGCTAAATCTGGTAATGAAAATGATCTTCTTGATTTCAGGCGTTCAGTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTCTGCGGCTATTCTTGGGCTCAAGAGAATGATAGGTTCTGTTCAGGATGAAGTACCTGTATTAATGAGTGGAGCAGGACATGATGCAATGGCTCTGTCTCATTTAACTAAGGTTTGTTATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.9

Weight (kDa)

6.27

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AciI	CCGC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	12, 117
AluBI	AGCT	2 cut(s)	271, 283
AluI	AGCT	2 cut(s)	271, 283
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	390
Alw44I	GTGCAC	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	62, 65
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AseI	ATTAAT	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	49, 52
BciT130I	CCWGG	2 cut(s)	14, 119
BcoDI	GTCTC	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	3 cut(s)	63, 66, 294
BlsI	GCNGC	3 cut(s)	64, 67, 295
Bme1390I	CCNGG	2 cut(s)	14, 119
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	14, 119
BmsI	GCATC	2 cut(s)	232, 361
BpmI	CTGGAG	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	12, 13
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse3DI	GCAATG	2 cut(s)	146, 381
BseBI	CCWGG	2 cut(s)	14, 119
BseDI	CCNNGG	2 cut(s)	12, 13
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	2 cut(s)	146, 381
BseMII	CTCAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	49, 52
BseYI	CCCAGC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	224, 309
Bsp143I	GATC	2 cut(s)	190, 229
BspACI	CCGC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	259
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	94
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	2 cut(s)	146, 381
BssECI	CCNNGG	2 cut(s)	12, 13
BssMI	GATC	2 cut(s)	190, 229
Bst2UI	CCWGG	2 cut(s)	14, 119
Bst4CI	ACNGT	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	267, 396
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	193, 232
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	190, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	14, 119
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	12, 117
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	49, 52
BtsCI	GGATG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	49
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	5 cut(s)	20, 43, 50, 239, 368
CviJI	RGCY	8 cut(s)	62, 77, 96, 271, 283, 296, 307, 380
CviKI_1	RGCY	8 cut(s)	62, 77, 96, 271, 283, 296, 307, 380
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	267, 396
DpnI	GATC	2 cut(s)	192, 231
DpnII	GATC	2 cut(s)	190, 229
Eco24I	GRGCYC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	12, 117
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	5 cut(s)	23, 46, 53, 242, 371
FaiI	YATR	7 cut(s)	21, 44, 51, 57, 59, 240, 369
FatI	CATG	5 cut(s)	19, 42, 49, 238, 367
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	3 cut(s)	63, 66, 294
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	63, 66, 294
GluI	GCNGC	3 cut(s)	63, 66, 294
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	5 cut(s)	23, 46, 53, 242, 371
HinfI	GANTC	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	5 cut(s)	50, 142, 197, 310, 332
Hpy8I	GTNNAC	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	5 cut(s)	103, 222, 245, 251, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	267, 396
Hsp92II	CATG	5 cut(s)	23, 46, 53, 242, 371
Kzo9I	GATC	2 cut(s)	190, 229
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	2 cut(s)	49, 52
LweI	GCATC	2 cut(s)	232, 361
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	2 cut(s)	192, 231
MboI	GATC	2 cut(s)	190, 229
MboII	GAAGA	1 cut(s)	185
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	224, 309
MluCI	AATT	2 cut(s)	154, 225
MseI	TTAA	4 cut(s)	164, 350, 392, 412
MspR9I	CCNGG	2 cut(s)	14, 119
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	14, 119
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	2 cut(s)	190, 229
NlaIII	CATG	5 cut(s)	23, 46, 53, 242, 371
NlaIV	GGNNCC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	49
PasI	CCCWGGG	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	64, 67, 295
PshBI	ATTAAT	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	12, 117
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	2 cut(s)	12, 117
PspN4I	GGNNCC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	4 cut(s)	164, 350, 392, 412
SatI	GCNGC	3 cut(s)	63, 66, 294
Sau3AI	GATC	2 cut(s)	190, 229
ScrFI	CCNGG	2 cut(s)	14, 119
SduI	GDGCHC	2 cut(s)	224, 309
SetI	ASST	7 cut(s)	10, 108, 273, 285, 325, 346, 402
SfaNI	GCATC	2 cut(s)	232, 361
SfuI	TTCGAA	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	154, 225
SsiI	CCGC	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	12, 117
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	154, 225
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	4 cut(s)	164, 350, 392, 412
Tru9I	TTAA	4 cut(s)	164, 350, 392, 412
TseI	GCWGC	2 cut(s)	62, 65
TspDTI	ATGAA	2 cut(s)	198, 351
VneI	GTGCAC	1 cut(s)	220
VspI	ATTAAT	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.