Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

32266282 .. 32268228

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG251500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAGGCGGCGTGATGAGGACGGCGGCGAAGGTGGCCGGCATCGGCAGCGTCATGCACGGCGGGCTGCGCGGCTCGCCGGCGGTTCCGTCGTCCGGGAAGTCGGTGCGGACGGCCTCGATCCCCGTCGCGGCGGGGATATCGGCGCAGAGCGGCAAGGGGGGTGATAGGTCGGCGATCGAGAAGCCGTTGTTGGAGGCGACGACGGCGGAGGACTGGCAAATGGTCGGCGAGGGGGAGTTGGTGATGTCGGCCGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCTCCGAGCTTCCAGGAGGCCAAAGAGGCCACCGACGAGTTGAAAGATGCTCTGGATAAGGCATACCTATCTTCACCCAAAATTACTGAGCTTGGGGAACTGACTGCTGCTGATAAGGTGTCGGGGCTGTCTCAGCTTTCAAACCCTGAGGCAGAGTCCCTTCTTATTACTAGGACCTCAGTGCCACAACATGCTTACCAGGCATTTGAACTGCTGAGTCGAAGTACTGAGGCTCAGAATGTTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCGGTATGAATCTGCTTCAGAGTCGGAGGTTTTCAATCCCGTATCATCTAAGGAGATCGTAGAGGAACATGATTCAAGCCAATCTTTTGACCTGGAACGTCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCGTTGTCAGCAATTTGTCGACATACATTCAAAACATATTTGAACCCCCTGCAGATGACAATGGGCCTACCAAAACTGCAATAGCATCTGGGTTCATGGGACTGGCAGTTATGGTTGTAATGGTGGTTTTGCTGAAGCGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

32.34

Weight (kDa)

4.82

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	2 cut(s)	153, 290
AccI	GTMKAC	1 cut(s)	791
AccII	CGCG	2 cut(s)	72, 131
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	2 cut(s)	36, 252
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	630
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	95, 130
AgsI	TTSAA	8 cut(s)	331, 429, 497, 664, 705, 736, 803, 815
AjnI	CCWGG	3 cut(s)	300, 486, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AloI	GAACNNNNNNTCC	2 cut(s)	716, 748
AluBI	AGCT	4 cut(s)	297, 379, 424, 760
AluI	AGCT	4 cut(s)	297, 379, 424, 760
Alw26I	GTCTC	2 cut(s)	423, 612
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	6 cut(s)	36, 114, 252, 306, 315, 836
ApeKI	GCWGC	3 cut(s)	48, 67, 395
ApoI	RAATTY	1 cut(s)	580
AspLEI	GCGC	3 cut(s)	72, 148, 287
AspS9I	GGNCC	2 cut(s)	462, 836
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	176, 256, 354
AvaII	GGWCC	1 cut(s)	462
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	54, 60, 382
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	5 cut(s)	39, 76, 129, 172, 222
BciT130I	CCWGG	3 cut(s)	302, 488, 722
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	423, 612
BfaI	CTAG	2 cut(s)	459, 916
BfmI	CTRYAG	1 cut(s)	822
BfoI	RGCGCY	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 132, 154, 288, 396
BlsI	GCNGC	9 cut(s)	11, 28, 50, 69, 74, 133, 155, 289, 397
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	4 cut(s)	97, 302, 488, 722
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	2 cut(s)	462, 836
BmiI	GGNNCC	2 cut(s)	87, 286
BmrFI	CCNGG	4 cut(s)	97, 302, 488, 722
BmsI	GCATC	4 cut(s)	51, 255, 325, 866
BpuMI	CCSGG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 130
Bse118I	RCCGGY	3 cut(s)	38, 79, 254
Bse1I	ACTGG	2 cut(s)	221, 879
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	302, 488, 722
BseDI	CCNNGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	95, 130
BseMII	CTCAG	7 cut(s)	366, 426, 434, 480, 494, 507, 536
BseNI	ACTGG	2 cut(s)	221, 879
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	54, 60, 382
Bsh1236I	CGCG	2 cut(s)	72, 131
Bsh1285I	CGRYCG	2 cut(s)	180, 255
BshFI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 838
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	180, 255
BsiSI	CCGG	4 cut(s)	39, 80, 96, 255
BslFI	GGGAC	2 cut(s)	430, 885
BslI	CCNNNNNNNGG	2 cut(s)	95, 130
BsmAI	GTCTC	2 cut(s)	423, 612
BsmFI	GGGAC	2 cut(s)	430, 885
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 838
Bsp143I	GATC	3 cut(s)	120, 177, 684
BspANI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 838
BspCNI	CTCAG	7 cut(s)	367, 427, 433, 479, 495, 508, 535
BspFNI	CGCG	2 cut(s)	72, 131
BspLI	GGNNCC	2 cut(s)	87, 286
BspMAI	CTGCAG	1 cut(s)	826
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	284
BsrBI	CCGCTC	2 cut(s)	153, 290
BsrFI	RCCGGY	3 cut(s)	38, 79, 254
BsrI	ACTGG	2 cut(s)	221, 879
BssAI	RCCGGY	3 cut(s)	38, 79, 254
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	120, 177, 684
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	302, 488, 722
Bst4CI	ACNGT	2 cut(s)	766, 775
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	7 cut(s)	40, 65, 77, 81, 256, 260, 912
BstDEI	CTNAG	8 cut(s)	375, 420, 435, 466, 503, 516, 522, 678
BstFNI	CGCG	2 cut(s)	72, 131
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	72, 148, 287
BstKTI	GATC	3 cut(s)	123, 180, 687
BstMAI	GTCTC	2 cut(s)	423, 612
BstMBI	GATC	3 cut(s)	120, 177, 684
BstMCI	CGRYCG	2 cut(s)	180, 255
BstNI	CCWGG	3 cut(s)	302, 488, 722
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	95, 300, 486, 720
BstSFI	CTRYAG	1 cut(s)	822
BstUI	CGCG	2 cut(s)	72, 131
BstV1I	GCAGC	3 cut(s)	54, 60, 382
BstXI	CCANNNNNNTGG	1 cut(s)	561
BstZI	CGGCCG	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	6 cut(s)	38, 116, 254, 308, 317, 838
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	7 cut(s)	40, 65, 77, 81, 256, 260, 912
CfoI	GCGC	3 cut(s)	72, 148, 287
Cfr10I	RCCGGY	3 cut(s)	38, 79, 254
Cfr13I	GGNCC	2 cut(s)	462, 836
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	5 cut(s)	55, 479, 601, 698, 868
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	8 cut(s)	375, 420, 435, 466, 503, 516, 522, 678
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	3 cut(s)	122, 179, 686
DpnII	GATC	3 cut(s)	120, 177, 684
EaeI	YGGCCR	2 cut(s)	36, 252
EagI	CGGCCG	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	462
Eco52I	CGGCCG	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	630
Eco81I	CCTNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRII	CCWGG	3 cut(s)	300, 486, 720
EcoRV	GATATC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	5 cut(s)	58, 482, 604, 701, 871
FalI	AAGNNNNNCTT	4 cut(s)	697, 729, 744, 776
FaqI	GGGAC	2 cut(s)	430, 885
FatI	CATG	5 cut(s)	54, 478, 600, 697, 867
FauI	CCCGC	2 cut(s)	56, 127
FblI	GTMKAC	1 cut(s)	791
Fnu4HI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 132, 154, 288, 396
Fsp4HI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 132, 154, 288, 396
FspBI	CTAG	2 cut(s)	459, 916
GlaI	GCGC	3 cut(s)	71, 147, 286
GluI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 132, 154, 288, 396
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	6 cut(s)	38, 116, 254, 308, 317, 838
HapII	CCGG	4 cut(s)	39, 80, 96, 255
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	72, 148, 287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	58, 482, 604, 701, 871
Hin6I	GCGC	3 cut(s)	70, 146, 285
HinP1I	GCGC	3 cut(s)	70, 146, 285
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	6 cut(s)	443, 505, 605, 638, 650, 701
HpaII	CCGG	4 cut(s)	39, 80, 96, 255
HphI	GGTGA	3 cut(s)	176, 256, 354
Hpy166II	GTNNAC	1 cut(s)	792
Hpy188I	TCNGA	4 cut(s)	294, 525, 649, 655
Hpy188III	TCNNGA	3 cut(s)	181, 341, 562
Hpy8I	GTNNAC	1 cut(s)	792
Hpy99I	CGWCG	5 cut(s)	94, 131, 205, 208, 326
HpyAV	CCTTC	2 cut(s)	25, 458
HpyCH4III	ACNGT	2 cut(s)	766, 775
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	4 cut(s)	58, 545, 824, 851
HpyF3I	CTNAG	8 cut(s)	375, 420, 435, 466, 503, 516, 522, 678
HpySE526I	ACGT	1 cut(s)	727
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	58, 482, 604, 701, 871
HspAI	GCGC	3 cut(s)	70, 146, 285
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	3 cut(s)	38, 79, 254
KroNI	GCCGGC	3 cut(s)	40, 81, 256
Kzo9I	GATC	3 cut(s)	120, 177, 684
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	3 cut(s)	54, 60, 382
LweI	GCATC	4 cut(s)	51, 255, 325, 866
MaeI	CTAG	2 cut(s)	459, 916
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	122, 179, 686
MbiI	CCGCTC	2 cut(s)	153, 290
MboI	GATC	3 cut(s)	120, 177, 684
MboII	GAAGA	1 cut(s)	351
MluCI	AATT	5 cut(s)	369, 580, 596, 622, 784
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	4 cut(s)	452, 514, 614, 659
MmeI	TCCRAC	2 cut(s)	174, 633
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	3 cut(s)	38, 79, 254
MspI	CCGG	4 cut(s)	39, 80, 96, 255
MspR9I	CCNGG	4 cut(s)	97, 302, 488, 722
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	3 cut(s)	302, 488, 722
MvnI	CGCG	2 cut(s)	72, 131
NaeI	GCCGGC	3 cut(s)	40, 81, 256
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	120, 177, 684
NgoMIV	GCCGGC	3 cut(s)	38, 79, 254
NlaIII	CATG	5 cut(s)	58, 482, 604, 701, 871
NlaIV	GGNNCC	2 cut(s)	87, 286
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	548
NspI	RCATGY	1 cut(s)	482
PctI	GAATGC	1 cut(s)	571
PdiI	GCCGGC	3 cut(s)	40, 81, 256
PfeI	GAWTC	2 cut(s)	638, 701
PfoI	TCCNGGA	2 cut(s)	95, 300
PkrI	GCNGC	9 cut(s)	11, 28, 50, 69, 74, 133, 155, 289, 397
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	4 cut(s)	451, 513, 613, 658
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	4 cut(s)	451, 513, 613, 658
PpuMI	RGGWCCY	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	300, 486, 720
PspGI	CCWGG	3 cut(s)	300, 486, 720
PspN4I	GGNNCC	2 cut(s)	87, 286
PspPI	GGNCC	2 cut(s)	462, 836
PspPPI	RGGWCCY	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	826
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SalI	GTCGAC	1 cut(s)	790
SatI	GCNGC	9 cut(s)	10, 27, 49, 68, 73, 132, 154, 288, 396
Sau3AI	GATC	3 cut(s)	120, 177, 684
Sau96I	GGNCC	2 cut(s)	462, 836
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	4 cut(s)	452, 514, 614, 659
ScrFI	CCNGG	4 cut(s)	97, 302, 488, 722
SfaNI	GCATC	4 cut(s)	51, 255, 325, 866
SfcI	CTRYAG	1 cut(s)	822
SfiI	GGCCNNNNNGGCC	1 cut(s)	314
SfoI	GGCGCC	1 cut(s)	286
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	462
Sse9I	AATT	5 cut(s)	369, 580, 596, 622, 784
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	459, 916
StyD4I	CCNGG	4 cut(s)	95, 300, 486, 720
TaaI	ACNGT	2 cut(s)	766, 775
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	5 cut(s)	119, 180, 508, 539, 791
TasI	AATT	5 cut(s)	369, 580, 596, 622, 784
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	6 cut(s)	12, 29, 75, 134, 156, 290
TfiI	GAWTC	2 cut(s)	638, 701
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	3 cut(s)	48, 67, 395
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	589, 651, 856
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	580
XceI	RCATGY	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	791
XspI	CTAG	2 cut(s)	459, 916
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.