RLG00000033738

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006631
Physical Location & Seq
Forward (+)
31608970 .. 31610487
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033738

Sequence Viewer

Length: 933 bp
ATGGGAGGCGGCGTGATGAGGACGGCGGCGAAGGTTGCCGGGATCGGCAGCGTCATGCACGGCGGGCTGCGCGGCTCGCCGGCGGTTCCGTCGTCCGGGAAGTCGGTGCGGACGGCCTCGATCCCCGTCGCGGCGGGGATATCGGCGCAGAGCGGTAAGGGGGGTGATAGGTCGGCGATCGAGAAGCCGTTGCTGGAGACGACGCGAGAGGAGTTTGTGGACTGGCAAGTGGTCGGCGACGGCGGCGAGGGGGAGTTGGTTATGTCGGCCGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCTCCGAGCTTCCAGGAGGCCAAAGAGGCCACCGACGAGTTGAAAGATGCTCTGGATAAGGCATACCTCTCTTCACCCAAAATTACTGAGGTTGGGGAACTGACTGCTGCTGATAAGGTGTCGGGGCTGGCTCAGCTTTCAAACCCTGAGGCAGAGTCCCTTCTTATTACTAGGACTTCAGTGCCAAAACATGCTTACCAGGCATTTGAACTGCTGAGTCAAAGTACTGAGGCTCAGAATGTTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCGGTATGAATCTGCTTCAGATTCGGAGGTTTTCAATCCCGTATCATCTAAGGAGATCGTAGAGGAACATGATTCAAGCCAATCTTTTGACCTGGAACGTCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCATTGTCAGCAATTTGTCGACATACATTCAAAACATTTTTGAACCCCCTGCAGATGACAATGGGCCTACCAGAACTGCAATAGCATCTGGGTTCATGGGACTGGCAGTTATGGTTGTAATGGTGGTTTTGCTGAAGCGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

32.89

Weight (kDa)

4.78

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccBSI CCGCTC 2 cut(s) 153, 305
AccI GTMKAC 1 cut(s) 806
AccII CGCG 3 cut(s) 72, 131, 205
AclWI GGATC 2 cut(s) 50, 115
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 465, 645
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 2 cut(s) 95, 130
AgsI TTSAA 8 cut(s) 346, 444, 512, 679, 720, 751, 818, 830
AjnI CCWGG 3 cut(s) 315, 501, 735
AloI GAACNNNNNNTCC 2 cut(s) 731, 763
AluBI AGCT 3 cut(s) 312, 439, 775
AluI AGCT 3 cut(s) 312, 439, 775
Alw26I GTCTC 2 cut(s) 191, 627
AlwI GGATC 2 cut(s) 50, 115
AoxI GGCC 5 cut(s) 114, 267, 321, 330, 851
ApeKI GCWGC 3 cut(s) 48, 67, 410
ApoI RAATTY 1 cut(s) 595
AspLEI GCGC 3 cut(s) 72, 148, 302
AspS9I GGNCC 1 cut(s) 851
AsuC2I CCSGG 2 cut(s) 40, 97
AsuHPI GGTGA 2 cut(s) 176, 369
AxyI CCTNAGG 1 cut(s) 450
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 3 cut(s) 54, 60, 397
BccI CCATC 1 cut(s) 583
BceAI ACGGC 5 cut(s) 39, 76, 129, 172, 256
BciT130I CCWGG 3 cut(s) 317, 503, 737
BcnI CCSGG 2 cut(s) 40, 97
BcoDI GTCTC 2 cut(s) 191, 627
BfaI CTAG 2 cut(s) 474, 931
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 1 cut(s) 303
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 244, 303, 411
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 9 cut(s) 11, 28, 50, 69, 74, 133, 245, 304, 412
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 5 cut(s) 40, 97, 317, 503, 737
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 2 cut(s) 87, 301
BmrFI CCNGG 5 cut(s) 40, 97, 317, 503, 737
BmsI GCATC 3 cut(s) 270, 340, 881
BpmI CTGGAG 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 435
BpuMI CCSGG 2 cut(s) 40, 97
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 130
Bse118I RCCGGY 2 cut(s) 79, 269
Bse1I ACTGG 2 cut(s) 227, 894
Bse21I CCTNAGG 1 cut(s) 450
BseBI CCWGG 3 cut(s) 317, 503, 737
BseDI CCNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 95, 130
BseMII CTCAG 6 cut(s) 381, 441, 449, 509, 522, 551
BseNI ACTGG 2 cut(s) 227, 894
BseRI GAGGAG 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 3 cut(s) 54, 60, 397
Bsh1236I CGCG 3 cut(s) 72, 131, 205
Bsh1285I CGRYCG 2 cut(s) 180, 270
BshFI GGCC 5 cut(s) 116, 269, 323, 332, 853
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 2 cut(s) 180, 270
BsiSI CCGG 4 cut(s) 39, 80, 96, 270
BslFI GGGAC 2 cut(s) 445, 900
BslI CCNNNNNNNGG 2 cut(s) 95, 130
BsmAI GTCTC 2 cut(s) 191, 627
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 445, 900
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 5 cut(s) 116, 269, 323, 332, 853
Bsp143I GATC 4 cut(s) 42, 120, 177, 699
Bsp1720I GCTNAGC 1 cut(s) 435
BspANI GGCC 5 cut(s) 116, 269, 323, 332, 853
BspCNI CTCAG 6 cut(s) 382, 442, 448, 510, 523, 550
BspFNI CGCG 3 cut(s) 72, 131, 205
BspLI GGNNCC 2 cut(s) 87, 301
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 2 cut(s) 50, 115
BspT107I GGYRCC 1 cut(s) 299
BsrBI CCGCTC 2 cut(s) 153, 305
BsrFI RCCGGY 2 cut(s) 79, 269
BsrI ACTGG 2 cut(s) 227, 894
BssAI RCCGGY 2 cut(s) 79, 269
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 4 cut(s) 42, 120, 177, 699
BssNI GRCGYC 1 cut(s) 300
Bst2UI CCWGG 3 cut(s) 317, 503, 737
Bst4CI ACNGT 1 cut(s) 781
Bst6I CTCTTC 1 cut(s) 379
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 7 cut(s) 65, 77, 81, 271, 275, 432, 927
BstDEI CTNAG 7 cut(s) 390, 435, 450, 518, 531, 537, 693
BstFNI CGCG 3 cut(s) 72, 131, 205
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 3 cut(s) 72, 148, 302
BstKTI GATC 4 cut(s) 45, 123, 180, 702
BstMAI GTCTC 2 cut(s) 191, 627
BstMBI GATC 4 cut(s) 42, 120, 177, 699
BstMCI CGRYCG 2 cut(s) 180, 270
BstMWI GCNNNNNNNGC 9 cut(s) 35, 64, 69, 76, 243, 329, 436, 503, 557
BstNI CCWGG 3 cut(s) 317, 503, 737
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 5 cut(s) 38, 95, 315, 501, 735
BstSFI CTRYAG 1 cut(s) 837
BstUI CGCG 3 cut(s) 72, 131, 205
BstV1I GCAGC 3 cut(s) 54, 60, 397
BstXI CCANNNNNNTGG 1 cut(s) 576
BstZI CGGCCG 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 5 cut(s) 116, 269, 323, 332, 853
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 7 cut(s) 65, 77, 81, 271, 275, 432, 927
CfoI GCGC 3 cut(s) 72, 148, 302
Cfr10I RCCGGY 2 cut(s) 79, 269
Cfr13I GGNCC 1 cut(s) 851
CseI GACGC 2 cut(s) 40, 211
Csp6I GTAC 1 cut(s) 528
CviAII CATG 5 cut(s) 55, 494, 616, 713, 883
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 7 cut(s) 390, 435, 450, 518, 531, 537, 693
DinI GGCGCC 1 cut(s) 301
DpnI GATC 4 cut(s) 44, 122, 179, 701
DpnII GATC 4 cut(s) 42, 120, 177, 699
EaeI YGGCCR 1 cut(s) 267
EagI CGGCCG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 267
Eco32I GATATC 1 cut(s) 141
Eco52I CGGCCG 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 465, 645
Eco81I CCTNAGG 1 cut(s) 450
EcoRII CCWGG 3 cut(s) 315, 501, 735
EcoRV GATATC 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 301
EheI GGCGCC 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 5 cut(s) 58, 497, 619, 716, 886
FalI AAGNNNNNCTT 4 cut(s) 712, 744, 759, 791
FaqI GGGAC 2 cut(s) 445, 900
FatI CATG 5 cut(s) 54, 493, 615, 712, 882
FauI CCCGC 2 cut(s) 56, 127
FblI GTMKAC 1 cut(s) 806
Fnu4HI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 244, 303, 411
Fsp4HI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 244, 303, 411
FspBI CTAG 2 cut(s) 474, 931
GlaI GCGC 3 cut(s) 71, 147, 301
GluI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 244, 303, 411
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 5 cut(s) 116, 269, 323, 332, 853
HapII CCGG 4 cut(s) 39, 80, 96, 270
HgaI GACGC 2 cut(s) 40, 211
HhaI GCGC 3 cut(s) 72, 148, 302
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 5 cut(s) 58, 497, 619, 716, 886
Hin6I GCGC 3 cut(s) 70, 146, 300
HinP1I GCGC 3 cut(s) 70, 146, 300
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 6 cut(s) 458, 520, 620, 653, 665, 716
HpaII CCGG 4 cut(s) 39, 80, 96, 270
HphI GGTGA 2 cut(s) 176, 369
Hpy166II GTNNAC 2 cut(s) 220, 807
Hpy188I TCNGA 4 cut(s) 309, 540, 664, 670
Hpy188III TCNNGA 3 cut(s) 181, 356, 577
Hpy8I GTNNAC 2 cut(s) 220, 807
Hpy99I CGWCG 5 cut(s) 94, 131, 205, 242, 341
HpyAV CCTTC 2 cut(s) 25, 473
HpyCH4III ACNGT 1 cut(s) 781
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 4 cut(s) 58, 560, 839, 866
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 64, 69, 76, 243, 329, 436, 503, 557
HpyF3I CTNAG 7 cut(s) 390, 435, 450, 518, 531, 537, 693
HpySE526I ACGT 1 cut(s) 742
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 5 cut(s) 58, 497, 619, 716, 886
HspAI GCGC 3 cut(s) 70, 146, 300
KasI GGCGCC 1 cut(s) 299
KroI GCCGGC 2 cut(s) 79, 269
KroNI GCCGGC 2 cut(s) 81, 271
Kzo9I GATC 4 cut(s) 42, 120, 177, 699
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 54, 60, 397
LweI GCATC 3 cut(s) 270, 340, 881
MaeI CTAG 2 cut(s) 474, 931
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 1 cut(s) 563
MalI GATC 4 cut(s) 44, 122, 179, 701
MbiI CCGCTC 2 cut(s) 153, 305
MboI GATC 4 cut(s) 42, 120, 177, 699
MboII GAAGA 1 cut(s) 366
MluCI AATT 5 cut(s) 384, 595, 611, 637, 799
Mly113I GGCGCC 1 cut(s) 300
MlyI GAGTC 3 cut(s) 467, 529, 629
MreI CGCCGGCG 1 cut(s) 79
MroNI GCCGGC 2 cut(s) 79, 269
MspI CCGG 4 cut(s) 39, 80, 96, 270
MspR9I CCNGG 5 cut(s) 40, 97, 317, 503, 737
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 3 cut(s) 317, 503, 737
MvnI CGCG 3 cut(s) 72, 131, 205
MwoI GCNNNNNNNGC 9 cut(s) 35, 64, 69, 76, 243, 329, 436, 503, 557
NaeI GCCGGC 2 cut(s) 81, 271
NarI GGCGCC 1 cut(s) 300
NciI CCSGG 2 cut(s) 40, 97
NdeII GATC 4 cut(s) 42, 120, 177, 699
NgoMIV GCCGGC 2 cut(s) 79, 269
NlaIII CATG 5 cut(s) 58, 497, 619, 716, 886
NlaIV GGNNCC 2 cut(s) 87, 301
NmeAIII GCCGAG 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 563
NspI RCATGY 1 cut(s) 497
PctI GAATGC 1 cut(s) 586
PdiI GCCGGC 2 cut(s) 81, 271
PfeI GAWTC 3 cut(s) 653, 665, 716
PfoI TCCNGGA 2 cut(s) 95, 315
PkrI GCNGC 9 cut(s) 11, 28, 50, 69, 74, 133, 245, 304, 412
Ple19I CGATCG 1 cut(s) 180
PleI GAGTC 3 cut(s) 466, 528, 628
PluTI GGCGCC 1 cut(s) 303
PpsI GAGTC 3 cut(s) 466, 528, 628
Psp6I CCWGG 3 cut(s) 315, 501, 735
PspGI CCWGG 3 cut(s) 315, 501, 735
PspN4I GGNNCC 2 cut(s) 87, 301
PspPI GGNCC 1 cut(s) 851
PstI CTGCAG 1 cut(s) 841
PvuI CGATCG 1 cut(s) 180
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SalI GTCGAC 1 cut(s) 805
SatI GCNGC 9 cut(s) 10, 27, 49, 68, 73, 132, 244, 303, 411
Sau3AI GATC 4 cut(s) 42, 120, 177, 699
Sau96I GGNCC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 3 cut(s) 467, 529, 629
ScrFI CCNGG 5 cut(s) 40, 97, 317, 503, 737
SfaNI GCATC 3 cut(s) 270, 340, 881
SfcI CTRYAG 1 cut(s) 837
SfiI GGCCNNNNNGGCC 1 cut(s) 329
SfoI GGCGCC 1 cut(s) 301
SgrAI CRCCGGYG 1 cut(s) 79
Sse9I AATT 5 cut(s) 384, 595, 611, 637, 799
SspDI GGCGCC 1 cut(s) 299
SspMI CTAG 2 cut(s) 474, 931
StyD4I CCNGG 5 cut(s) 38, 95, 315, 501, 735
TaaI ACNGT 1 cut(s) 781
TaiI ACGT 1 cut(s) 745
TaqI TCGA 4 cut(s) 119, 180, 554, 806
TasI AATT 5 cut(s) 384, 595, 611, 637, 799
TatI WGTACW 1 cut(s) 527
TauI GCSGC 6 cut(s) 12, 29, 75, 134, 246, 305
TfiI GAWTC 3 cut(s) 653, 665, 716
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 3 cut(s) 48, 67, 410
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 3 cut(s) 604, 666, 871
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 489
XapI RAATTY 1 cut(s) 595
XceI RCATGY 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 806
XspI CTAG 2 cut(s) 474, 931
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.