Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

32641497 .. 32643091

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGAGGCGGAGTGATGAGGACGGCGGCGAAGGTGGCCGGCATCGGCAGCGTCATGCACGGCGGGCTGCGCGGATCGCCGGCGGTTCCGTCGTCCGGGATGTCGGTGCGGACGGCCTCGATCCCCGTCGCGGCGGGGATATCGGCGCAGAGCGGCAAGGGGGGTGATAGGTCGGCGATCGAGAAGCCGTTGCTGGAGGCGACGACGGCGGAGGACTGGCAAATGGTCGGCGAGGGAGAGTTGGTGATGTCGGCCGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCTCCGAGCTTCCAGGAGGCCAAAGAAGCCACCGACGAGTTGAAAGATGCTCTGGATAAGGCATACCTATCTTCACCCACAATTACTGAGCTTGGGGAACTGACTGCTGCTGATAAGGTGTCGGGGCTGTCTCAGCTTTCAAACCCTGAGGCAGAGTCCCTTCTTATTACTAGAACTTCAGTGCCACAACATGCTTACCAGGCATTTGAACTGCTGAGTCGAAGTACTGAGGCTCAGGTAATGACTGAAACTCCACCTCCCAATCTCAAGGGAATTATTAATTGCTTGGTTTTATTCCCAGAATGTGTTGCTTCGATTGCAAGTGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCTGTCAAACAATTCATGGAGTCTCAACAAAACATAAATTATGCTCGGTATGAATCTGCTTCAGATTCAGAGGTTTTCAATCCCGTATCATCTAAGGAGATCGTAGAGGAACATGATTCAAGCGAATCTTTTGACCTGGAACGTCTGGTCAATGGTTTTGTGGATAAAGTCAAGCTTACTGTCAATACCATTGTCAGCAATTTGTCGACATACATTCAAAGCATTTTTGGACCCGCTGCAGATGACAATGGGCCTACCAGAACTGCAATAACATCTGGGTTCATGGGACTGGCAGTTTGGTTGTTATGGTGGTTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

34.29

Weight (kDa)

4.58

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	2 cut(s)	153, 290
AccI	GTMKAC	1 cut(s)	854
AccII	CGCG	2 cut(s)	72, 131
AclWI	GGATC	2 cut(s)	82, 115
AcoI	YGGCCR	2 cut(s)	36, 252
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	450, 693
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	95, 130
AgsI	TTSAA	6 cut(s)	331, 429, 497, 727, 768, 866
AjnI	CCWGG	3 cut(s)	300, 486, 783
AluBI	AGCT	4 cut(s)	297, 379, 424, 823
AluI	AGCT	4 cut(s)	297, 379, 424, 823
Alw26I	GTCTC	2 cut(s)	423, 675
AlwI	GGATC	2 cut(s)	82, 115
AoxI	GGCC	5 cut(s)	36, 114, 252, 306, 899
ApeKI	GCWGC	4 cut(s)	48, 67, 395, 884
ApoI	RAATTY	1 cut(s)	643
ArsI	GACNNNNNNTTYG	2 cut(s)	927, 959
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	3 cut(s)	72, 148, 287
AspS9I	GGNCC	2 cut(s)	878, 899
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	3 cut(s)	176, 256, 354
AvaII	GGWCC	1 cut(s)	878
AxyI	CCTNAGG	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	54, 60, 382, 871
BccI	CCATC	1 cut(s)	631
BceAI	ACGGC	5 cut(s)	39, 76, 129, 172, 222
BciT130I	CCWGG	3 cut(s)	302, 488, 785
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	423, 675
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	8 cut(s)	27, 49, 68, 132, 154, 288, 396, 885
BlsI	GCNGC	8 cut(s)	28, 50, 69, 133, 155, 289, 397, 886
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	4 cut(s)	97, 302, 488, 785
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	878, 899
BmiI	GGNNCC	3 cut(s)	87, 286, 880
BmrFI	CCNGG	4 cut(s)	97, 302, 488, 785
BmsI	GCATC	3 cut(s)	51, 255, 325
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	7 cut(s)	27, 228, 258, 523, 529, 553, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 130
Bse118I	RCCGGY	3 cut(s)	38, 79, 254
Bse1I	ACTGG	2 cut(s)	221, 942
Bse21I	CCTNAGG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	302, 488, 785
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	95, 130
BseMII	CTCAG	6 cut(s)	366, 426, 434, 494, 507, 536
BseNI	ACTGG	2 cut(s)	221, 942
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	54, 60, 382, 871
Bsh1236I	CGCG	2 cut(s)	72, 131
Bsh1285I	CGRYCG	2 cut(s)	180, 255
BshFI	GGCC	5 cut(s)	38, 116, 254, 308, 901
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	180, 255
BsiSI	CCGG	4 cut(s)	39, 80, 96, 255
BslFI	GGGAC	2 cut(s)	430, 948
BslI	CCNNNNNNNGG	2 cut(s)	95, 130
BsmAI	GTCTC	2 cut(s)	423, 675
BsmFI	GGGAC	2 cut(s)	430, 948
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	5 cut(s)	38, 116, 254, 308, 901
Bsp143I	GATC	4 cut(s)	74, 120, 177, 747
BspANI	GGCC	5 cut(s)	38, 116, 254, 308, 901
BspCNI	CTCAG	6 cut(s)	367, 427, 433, 495, 508, 535
BspFNI	CGCG	2 cut(s)	72, 131
BspLI	GGNNCC	3 cut(s)	87, 286, 880
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	2 cut(s)	82, 115
BspT107I	GGYRCC	1 cut(s)	284
BsrBI	CCGCTC	2 cut(s)	153, 290
BsrFI	RCCGGY	3 cut(s)	38, 79, 254
BsrI	ACTGG	2 cut(s)	221, 942
BssAI	RCCGGY	3 cut(s)	38, 79, 254
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	4 cut(s)	74, 120, 177, 747
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	302, 488, 785
Bst4CI	ACNGT	1 cut(s)	829
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	5 cut(s)	40, 65, 81, 256, 260
BstDEI	CTNAG	7 cut(s)	375, 420, 435, 503, 516, 522, 741
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	72, 131
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	72, 148, 287
BstKTI	GATC	4 cut(s)	77, 123, 180, 750
BstMAI	GTCTC	2 cut(s)	423, 675
BstMBI	GATC	4 cut(s)	74, 120, 177, 747
BstMCI	CGRYCG	2 cut(s)	180, 255
BstNI	CCWGG	3 cut(s)	302, 488, 785
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	4 cut(s)	95, 300, 486, 783
BstSFI	CTRYAG	1 cut(s)	885
BstUI	CGCG	2 cut(s)	72, 131
BstV1I	GCAGC	4 cut(s)	54, 60, 382, 871
BstXI	CCANNNNNNTGG	1 cut(s)	624
BstZI	CGGCCG	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	38, 116, 254, 308, 901
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	5 cut(s)	40, 65, 81, 256, 260
CfoI	GCGC	3 cut(s)	72, 148, 287
Cfr10I	RCCGGY	3 cut(s)	38, 79, 254
Cfr13I	GGNCC	2 cut(s)	878, 899
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	5 cut(s)	55, 479, 664, 761, 931
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	7 cut(s)	375, 420, 435, 503, 516, 522, 741
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	4 cut(s)	76, 122, 179, 749
DpnII	GATC	4 cut(s)	74, 120, 177, 747
EaeI	YGGCCR	2 cut(s)	36, 252
EagI	CGGCCG	1 cut(s)	252
EciI	GGCGGA	2 cut(s)	24, 224
EclXI	CGGCCG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	878
Eco52I	CGGCCG	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	450, 693
Eco81I	CCTNAGG	1 cut(s)	435
EcoRII	CCWGG	3 cut(s)	300, 486, 783
EcoRV	GATATC	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	5 cut(s)	58, 482, 667, 764, 934
FalI	AAGNNNNNCTT	4 cut(s)	760, 792, 807, 839
FaqI	GGGAC	2 cut(s)	430, 948
FatI	CATG	5 cut(s)	54, 478, 663, 760, 930
FauI	CCCGC	3 cut(s)	56, 127, 889
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	8 cut(s)	27, 49, 68, 132, 154, 288, 396, 885
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	8 cut(s)	27, 49, 68, 132, 154, 288, 396, 885
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	3 cut(s)	71, 147, 286
GluI	GCNGC	8 cut(s)	27, 49, 68, 132, 154, 288, 396, 885
GsuI	CTGGAG	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	38, 116, 254, 308, 901
HapII	CCGG	4 cut(s)	39, 80, 96, 255
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	3 cut(s)	72, 148, 287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	58, 482, 667, 764, 934
Hin6I	GCGC	3 cut(s)	70, 146, 285
HinP1I	GCGC	3 cut(s)	70, 146, 285
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	7 cut(s)	443, 505, 668, 701, 713, 764, 773
HpaII	CCGG	4 cut(s)	39, 80, 96, 255
HphI	GGTGA	3 cut(s)	176, 256, 354
Hpy166II	GTNNAC	1 cut(s)	855
Hpy188I	TCNGA	3 cut(s)	294, 712, 718
Hpy188III	TCNNGA	3 cut(s)	181, 341, 625
Hpy8I	GTNNAC	1 cut(s)	855
Hpy99I	CGWCG	5 cut(s)	94, 131, 205, 208, 326
HpyAV	CCTTC	2 cut(s)	25, 458
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	4 cut(s)	58, 608, 887, 914
HpyF3I	CTNAG	7 cut(s)	375, 420, 435, 503, 516, 522, 741
HpySE526I	ACGT	1 cut(s)	790
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	58, 482, 667, 764, 934
HspAI	GCGC	3 cut(s)	70, 146, 285
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	3 cut(s)	38, 79, 254
KroNI	GCCGGC	3 cut(s)	40, 81, 256
Kzo9I	GATC	4 cut(s)	74, 120, 177, 747
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	4 cut(s)	54, 60, 382, 871
LweI	GCATC	3 cut(s)	51, 255, 325
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	4 cut(s)	76, 122, 179, 749
MbiI	CCGCTC	2 cut(s)	153, 290
MboI	GATC	4 cut(s)	74, 120, 177, 747
MboII	GAAGA	1 cut(s)	351
MluCI	AATT	7 cut(s)	369, 561, 568, 643, 659, 685, 847
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	3 cut(s)	452, 514, 677
MreI	CGCCGGCG	1 cut(s)	79
MroNI	GCCGGC	3 cut(s)	38, 79, 254
MseI	TTAA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	4 cut(s)	39, 80, 96, 255
MspR9I	CCNGG	4 cut(s)	97, 302, 488, 785
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	3 cut(s)	302, 488, 785
MvnI	CGCG	2 cut(s)	72, 131
NaeI	GCCGGC	3 cut(s)	40, 81, 256
NarI	GGCGCC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	74, 120, 177, 747
NgoMIV	GCCGGC	3 cut(s)	38, 79, 254
NlaIII	CATG	5 cut(s)	58, 482, 667, 764, 934
NlaIV	GGNNCC	3 cut(s)	87, 286, 880
NmeAIII	GCCGAG	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	611
NspI	RCATGY	1 cut(s)	482
PctI	GAATGC	1 cut(s)	634
PdiI	GCCGGC	3 cut(s)	40, 81, 256
PfeI	GAWTC	4 cut(s)	701, 713, 764, 773
PfoI	TCCNGGA	2 cut(s)	95, 300
PkrI	GCNGC	8 cut(s)	28, 50, 69, 133, 155, 289, 397, 886
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	3 cut(s)	451, 513, 676
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	3 cut(s)	451, 513, 676
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	300, 486, 783
PspGI	CCWGG	3 cut(s)	300, 486, 783
PspN4I	GGNNCC	3 cut(s)	87, 286, 880
PspPI	GGNCC	2 cut(s)	878, 899
PstI	CTGCAG	1 cut(s)	889
PvuI	CGATCG	1 cut(s)	180
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SalI	GTCGAC	1 cut(s)	853
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	8 cut(s)	27, 49, 68, 132, 154, 288, 396, 885
Sau3AI	GATC	4 cut(s)	74, 120, 177, 747
Sau96I	GGNCC	2 cut(s)	878, 899
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	3 cut(s)	452, 514, 677
ScrFI	CCNGG	4 cut(s)	97, 302, 488, 785
SfaNI	GCATC	3 cut(s)	51, 255, 325
SfcI	CTRYAG	1 cut(s)	885
SfoI	GGCGCC	1 cut(s)	286
SgrAI	CRCCGGYG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	7 cut(s)	369, 561, 568, 643, 659, 685, 847
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	4 cut(s)	95, 300, 486, 783
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	5 cut(s)	119, 180, 508, 602, 854
TasI	AATT	7 cut(s)	369, 561, 568, 643, 659, 685, 847
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	4 cut(s)	29, 134, 156, 290
TfiI	GAWTC	4 cut(s)	701, 713, 764, 773
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	4 cut(s)	48, 67, 395, 884
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	3 cut(s)	652, 714, 919
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	878
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	854
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.