Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Reverse (-)

33445475 .. 33447789

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1230100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGAGGTGGCGGAGTCATGAGGTCGGTGGCAAAGGTGGCCGGGATCGGCGGCGTTGTCCACGGTGGCATGCTCCGCGGCGCGCCGGGCGTTTCTTCGCCGACTGGCCATTCGGTCCGCAAGGCCTCAATTCCCGTGGCAGTGACCCTCACGGCTCAGAATCACGGCGGAGCTGAAGTGGCGGCGATTGAGAAGCCTGCGTGGGACGCGGGCGACGAATTTGTCGACTGGCAGGTGGTCGGGGCCGGAGAAGATGATCTGGTGATGTCGGGCGGCGAGCCGATGCCGAGGGTTGTCTTCGACGCTGCGCCGAGCTTCAAGGAGGCCAAAGAGGCTACCGCTGAATTGAAAGACGCCCTCGATAAGGTATATCTTTCTTCACCCAAATCTACTGATTTTGGGGAGCAGTCTGCTGCTGATAATGTGGCTGGACTGTCTCTGATCACAAACCCTGAACCTGAGGAGATGGAATCCCTACTTCTTACTAGGACTTCAGTGCCGAAACATGCTCTTCGGGCATTTGAAATGCTGAGTCAAAGTTCTGAAGCTCAGAATGTTGTTGCTTCAATTGCAAGTGACCCGAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAGCAATTTATGGCCAACAAGAACTATAATCATTACATGGAAGAATATGCAGCAGATACCTATCCAGTTTCACACAAGAAGCTTGAAGACGAATCAGAGAAATCTGACCGCTTGGAAGATATGCTCGGTGGTTTTGTGAAGAAAATCAAGATGACAGTGGAGAAGTGGGTCAGCGATTTGTCGTCATTCATCCAGAACATTTTCGAACCCCCTGCAGGTGAGACTGAAGCAGATGGAGGGAATACAAAGTCAGTTGTAGCATCTGCGTTCATGGGACTAGCAGTTATGGTTGTTATGGTGGTCTTGCTGAAGCGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

33.18

Weight (kDa)

4.87

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	223, 824
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	2 cut(s)	223, 824
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	3 cut(s)	78, 83, 209
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	3 cut(s)	39, 106, 630
AcsI	RAATTY	2 cut(s)	218, 607
AcuI	CTGAAG	4 cut(s)	195, 477, 564, 864
AcyI	GRCGYC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	364, 833
AgsI	TTSAA	5 cut(s)	319, 349, 524, 567, 704
AluBI	AGCT	4 cut(s)	173, 315, 548, 700
AluI	AGCT	4 cut(s)	173, 315, 548, 700
Alw26I	GTCTC	2 cut(s)	441, 833
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	6 cut(s)	39, 106, 123, 243, 324, 630
ApeKI	GCWGC	3 cut(s)	305, 413, 668
ApoI	RAATTY	2 cut(s)	218, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AscI	GGCGCGCC	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	818
AspLEI	GCGC	3 cut(s)	83, 85, 310
AspS9I	GGNCC	2 cut(s)	115, 243
AsuC2I	CCSGG	2 cut(s)	43, 87
AsuHPI	GGTGA	3 cut(s)	274, 372, 848
AsuII	TTCGAA	1 cut(s)	822
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	459
BalI	TGGCCA	2 cut(s)	108, 632
BbsI	GAAGAC	2 cut(s)	289, 711
BbvI	GCAGC	3 cut(s)	292, 400, 680
BccI	CCATC	3 cut(s)	460, 595, 845
BceAI	ACGGC	2 cut(s)	168, 181
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	43, 87
BcoDI	GTCTC	2 cut(s)	441, 833
BfaI	CTAG	3 cut(s)	486, 896, 937
BfmI	CTRYAG	1 cut(s)	831
BfuAI	ACCTGC	2 cut(s)	223, 824
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	7 cut(s)	52, 79, 183, 274, 306, 414, 669
BlsI	GCNGC	7 cut(s)	53, 80, 184, 275, 307, 415, 670
Bme1390I	CCNGG	2 cut(s)	43, 87
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 243
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	43, 87
BmsI	GCATC	2 cut(s)	273, 887
BpiI	GAAGAC	2 cut(s)	289, 711
Bpu14I	TTCGAA	1 cut(s)	822
BpuMI	CCSGG	2 cut(s)	43, 87
BsaBI	GATNNNNATC	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	61, 76, 135, 287
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 833
Bse1I	ACTGG	3 cut(s)	109, 233, 683
Bse21I	CCTNAGG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	678
BseDI	CCNNGG	4 cut(s)	61, 76, 135, 287
BseGI	GGATG	1 cut(s)	807
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	2 cut(s)	364, 833
BseMII	CTCAG	4 cut(s)	170, 450, 521, 563
BseNI	ACTGG	3 cut(s)	109, 233, 683
BsePI	GCGCGC	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	3 cut(s)	292, 400, 680
Bsh1236I	CGCG	3 cut(s)	78, 83, 209
BshFI	GGCC	6 cut(s)	41, 108, 125, 245, 326, 632
BsiSI	CCGG	3 cut(s)	42, 86, 246
BslFI	GGGAC	2 cut(s)	218, 906
BslI	CCNNNNNNNGG	2 cut(s)	364, 833
BsmAI	GTCTC	2 cut(s)	441, 833
BsmFI	GGGAC	2 cut(s)	218, 906
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	6 cut(s)	41, 108, 125, 245, 326, 632
Bsp119I	TTCGAA	1 cut(s)	822
Bsp143I	GATC	3 cut(s)	45, 256, 441
BspANI	GGCC	6 cut(s)	41, 108, 125, 245, 326, 632
BspCNI	CTCAG	4 cut(s)	169, 451, 522, 562
BspFNI	CGCG	3 cut(s)	78, 83, 209
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	2 cut(s)	223, 824
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	822
BsrI	ACTGG	3 cut(s)	109, 233, 683
BssECI	CCNNGG	4 cut(s)	61, 76, 135, 287
BssHII	GCGCGC	1 cut(s)	81
BssMI	GATC	3 cut(s)	45, 256, 441
BssNI	GRCGYC	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	65, 435, 775
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	822
BstC8I	GCNNGC	5 cut(s)	71, 83, 198, 211, 278
BstDEI	CTNAG	4 cut(s)	156, 459, 530, 549
BstDSI	CCRYGG	3 cut(s)	61, 76, 135
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	807
BstFNI	CGCG	3 cut(s)	78, 83, 209
BstHHI	GCGC	3 cut(s)	83, 85, 310
BstKTI	GATC	3 cut(s)	48, 259, 444
BstMAI	GTCTC	2 cut(s)	441, 833
BstMBI	GATC	3 cut(s)	45, 256, 441
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 75, 87, 179, 206, 332, 515, 569
BstNSI	RCATGY	2 cut(s)	73, 509
BstSCI	CCNGG	2 cut(s)	41, 85
BstSFI	CTRYAG	1 cut(s)	831
BstUI	CGCG	3 cut(s)	78, 83, 209
BstV1I	GCAGC	3 cut(s)	292, 400, 680
BstV2I	GAAGAC	2 cut(s)	289, 711
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	6 cut(s)	41, 108, 125, 245, 326, 632
BtgI	CCRYGG	3 cut(s)	61, 76, 135
BtsCI	GGATG	1 cut(s)	807
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	147, 501, 780
BveI	ACCTGC	2 cut(s)	223, 824
Cac8I	GCNNGC	5 cut(s)	71, 83, 198, 211, 278
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	3 cut(s)	83, 85, 310
Cfr13I	GGNCC	2 cut(s)	115, 243
Cfr42I	CCGCGG	1 cut(s)	79
CpoI	CGGWCCG	1 cut(s)	115
CseI	GACGC	3 cut(s)	215, 311, 362
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CspI	CGGWCCG	1 cut(s)	115
CviAII	CATG	5 cut(s)	19, 70, 506, 655, 889
DdeI	CTNAG	4 cut(s)	156, 459, 530, 549
DpnI	GATC	3 cut(s)	47, 258, 443
DpnII	GATC	3 cut(s)	45, 256, 441
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	3 cut(s)	39, 106, 630
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	2 cut(s)	27, 183
Eco147I	AGGCCT	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	4 cut(s)	195, 477, 564, 864
Eco81I	CCTNAGG	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	362
FaeI	CATG	5 cut(s)	22, 73, 509, 658, 892
FaqI	GGGAC	2 cut(s)	218, 906
FatI	CATG	5 cut(s)	18, 69, 505, 654, 888
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	7 cut(s)	52, 79, 183, 274, 306, 414, 669
FokI	GGATG	1 cut(s)	794
Fsp4HI	GCNGC	7 cut(s)	52, 79, 183, 274, 306, 414, 669
FspBI	CTAG	3 cut(s)	486, 896, 937
GlaI	GCGC	3 cut(s)	82, 84, 309
GluI	GCNGC	7 cut(s)	52, 79, 183, 274, 306, 414, 669
HaeIII	GGCC	6 cut(s)	41, 108, 125, 245, 326, 632
HapII	CCGG	3 cut(s)	42, 86, 246
HgaI	GACGC	3 cut(s)	215, 311, 362
HhaI	GCGC	3 cut(s)	83, 85, 310
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	5 cut(s)	22, 73, 509, 658, 892
Hin6I	GCGC	3 cut(s)	81, 83, 308
HinP1I	GCGC	3 cut(s)	81, 83, 308
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	5 cut(s)	15, 160, 470, 532, 710
HpaII	CCGG	3 cut(s)	42, 86, 246
HphI	GGTGA	3 cut(s)	274, 372, 848
Hpy166II	GTNNAC	2 cut(s)	61, 226
Hpy188I	TCNGA	6 cut(s)	159, 441, 544, 552, 715, 724
Hpy188III	TCNNGA	4 cut(s)	19, 589, 766, 811
Hpy8I	GTNNAC	2 cut(s)	61, 226
Hpy99I	CGWCG	2 cut(s)	218, 305
HpyCH4III	ACNGT	3 cut(s)	65, 435, 775
HpyCH4V	TGCA	3 cut(s)	572, 668, 833
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 75, 87, 179, 206, 332, 515, 569
HpyF3I	CTNAG	4 cut(s)	156, 459, 530, 549
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	22, 73, 509, 658, 892
HspAI	GCGC	3 cut(s)	81, 83, 308
Ksp22I	TGATCA	1 cut(s)	441
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	45, 256, 441
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	3 cut(s)	78, 170, 403
Lsp1109I	GCAGC	3 cut(s)	292, 400, 680
LweI	GCATC	2 cut(s)	273, 887
MaeI	CTAG	3 cut(s)	486, 896, 937
MaeIII	GTNAC	2 cut(s)	142, 575
MalI	GATC	3 cut(s)	47, 258, 443
MboI	GATC	3 cut(s)	45, 256, 441
MboII	GAAGA	9 cut(s)	87, 263, 289, 369, 503, 671, 716, 746, 769
MfeI	CAATTG	1 cut(s)	567
MlsI	TGGCCA	2 cut(s)	108, 632
MluCI	AATT	6 cut(s)	129, 218, 344, 567, 607, 623
MluNI	TGGCCA	2 cut(s)	108, 632
MlyI	GAGTC	2 cut(s)	24, 541
MnlI	CCTC	9 cut(s)	15, 136, 158, 282, 316, 325, 368, 454, 848
Mox20I	TGGCCA	2 cut(s)	108, 632
MroXI	GAANNNNTTC	1 cut(s)	818
MscI	TGGCCA	2 cut(s)	108, 632
Msp20I	TGGCCA	2 cut(s)	108, 632
MspA1I	CMGCKG	2 cut(s)	78, 341
MspI	CCGG	3 cut(s)	42, 86, 246
MspR9I	CCNGG	2 cut(s)	43, 87
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	598
MvnI	CGCG	3 cut(s)	78, 83, 209
MwoI	GCNNNNNNNGC	8 cut(s)	38, 75, 87, 179, 206, 332, 515, 569
NciI	CCSGG	2 cut(s)	43, 87
NdeII	GATC	3 cut(s)	45, 256, 441
NlaIII	CATG	5 cut(s)	22, 73, 509, 658, 892
NlaIV	GGNNCC	1 cut(s)	244
NmeAIII	GCCGAG	2 cut(s)	312, 336
NmuCI	GTSAC	2 cut(s)	142, 575
NspI	RCATGY	2 cut(s)	73, 509
NspV	TTCGAA	1 cut(s)	822
PaeI	GCATGC	1 cut(s)	73
PagI	TCATGA	1 cut(s)	18
PalAI	GGCGCGCC	1 cut(s)	81
PaqCI	CACCTGC	2 cut(s)	223, 824
PauI	GCGCGC	1 cut(s)	81
PceI	AGGCCT	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 222
PctI	GAATGC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	3 cut(s)	160, 470, 710
PkrI	GCNGC	7 cut(s)	53, 80, 184, 275, 307, 415, 670
PleI	GAGTC	2 cut(s)	23, 540
PpsI	GAGTC	2 cut(s)	23, 540
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	115, 243
PstI	CTGCAG	1 cut(s)	835
PteI	GCGCGC	1 cut(s)	81
Rsr2I	CGGWCCG	1 cut(s)	115
RsrII	CGGWCCG	1 cut(s)	115
SacII	CCGCGG	1 cut(s)	79
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	516
SatI	GCNGC	7 cut(s)	52, 79, 183, 274, 306, 414, 669
Sau3AI	GATC	3 cut(s)	45, 256, 441
Sau96I	GGNCC	2 cut(s)	115, 243
SbfI	CCTGCAGG	1 cut(s)	835
SchI	GAGTC	2 cut(s)	24, 541
ScrFI	CCNGG	2 cut(s)	43, 87
SdaI	CCTGCAGG	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	273, 887
SfcI	CTRYAG	1 cut(s)	831
Sfr303I	CCGCGG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	822
SgrBI	CCGCGG	1 cut(s)	79
SgsI	GGCGCGCC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	115
SphI	GCATGC	1 cut(s)	73
Sse8387I	CCTGCAGG	1 cut(s)	835
Sse9I	AATT	6 cut(s)	129, 218, 344, 567, 607, 623
SseBI	AGGCCT	1 cut(s)	125
SspMI	CTAG	3 cut(s)	486, 896, 937
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	41, 85
TaaI	ACNGT	3 cut(s)	65, 435, 775
TaqI	TCGA	4 cut(s)	225, 300, 360, 822
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	6 cut(s)	129, 218, 344, 567, 607, 623
TauI	GCSGC	4 cut(s)	54, 81, 185, 276
TfiI	GAWTC	3 cut(s)	160, 470, 710
TscAI	CASTG	3 cut(s)	147, 501, 780
TseFI	GTSAC	2 cut(s)	142, 575
TseI	GCWGC	3 cut(s)	305, 413, 668
Tsp45I	GTSAC	2 cut(s)	142, 575
TspDTI	ATGAA	2 cut(s)	796, 877
TspRI	CASTG	3 cut(s)	147, 501, 780
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	218, 607
XceI	RCATGY	2 cut(s)	73, 509
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	3 cut(s)	486, 896, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.