Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Reverse (-)

45790754 .. 45791946

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGATAACTCCTGGCCAAACAATGGACATATTGCTCACTGCGAATCAGTCTTCGGGTAATTACTATATGGGTGCAAGTGCTTTTGTCCACGCCGGACGTTCTGACCCCATCGACTTGCCGGTAACAAGAGCAATTATTAATTACAGCGACTATACTGGCTCTGTAATTCAGGATGATCTTGTTGGCCAGCTTCTTCCAACTGATATAAAAAATTTGCTTGTATATTTCAACGTACCTAGCAATTGCACGGGGCCACCATACATTGATGGTACGGGCGGGATGCACACTGCATCCTTAAACAACCAACGTTTCGTCACCAAAGAAATCAATATACTGCAGGCATATCGCTGCAAACTAGAAGATGTCTACACCGAGGATTTCCCAGCCACACCACCCAAGCCATTTGACTACAATGCAGCTGATACGGGTGATAATGAAGCAGTTCCAACTGTAGGTACGAAGGTGATGACTGTTAACTATGGAGATGCAGTTGAAATAGTTTTCCAAGGAACCAACGTTGGGAACGCAGAGAACCATCCGATGCATATTCATGGATATAACTTCTATCTGGTTGCTAATGGTTCTGGAAATTTCGGTTCTTCATCTGTAGAGTATAGGTTGGACAATCCAGCTCAAGCCAATACCTTTGGAGTCCCTAAGAATGGATGGCTCGCTGTTAGATTCCAGGCTAACAATCCTGGAGTGTGGTTTCTACATTGCCATTTGGAAAGGCATGCTACCTGGGGTATGGCCGGAGTTCTCATCGTGAAGAATACAACTACTGACGTGGACCAGACTCTTACGGATCCCCCAGCAGGCTACCCTCCTTGTCCGCTCCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

30.58

Weight (kDa)

4.87

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase	PF00394	1 - 49	1.2e-07	Multicopper oxidase
Cu-oxidase_2	PF07731	127 - 258	7.4e-40	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	2 cut(s)	276, 833
AclI	AACGTT	2 cut(s)	307, 516
AclWI	GGATC	2 cut(s)	800, 813
AcoI	YGGCCR	3 cut(s)	13, 184, 750
AcsI	RAATTY	2 cut(s)	211, 589
AfaI	GTAC	3 cut(s)	234, 271, 457
AfiI	CCNNNNNNNGG	5 cut(s)	22, 452, 519, 662, 815
AgsI	TTSAA	2 cut(s)	229, 494
AjiI	CACGTC	1 cut(s)	787
AjnI	CCWGG	4 cut(s)	10, 684, 697, 740
AluBI	AGCT	3 cut(s)	190, 419, 632
AluI	AGCT	3 cut(s)	190, 419, 632
AlwI	GGATC	2 cut(s)	800, 813
AoxI	GGCC	4 cut(s)	13, 184, 251, 750
ApeKI	GCWGC	2 cut(s)	348, 416
ApoI	RAATTY	2 cut(s)	211, 589
AseI	ATTAAT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	251, 790
AsuHPI	GGTGA	3 cut(s)	307, 440, 475
AvaII	GGWCC	1 cut(s)	790
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BalI	TGGCCA	2 cut(s)	15, 186
BamHI	GGATCC	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	335, 428
BccI	CCATC	4 cut(s)	116, 260, 543, 660
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BciT130I	CCWGG	4 cut(s)	12, 686, 699, 742
BfaI	CTAG	2 cut(s)	237, 356
BfmI	CTRYAG	3 cut(s)	335, 450, 606
BisI	GCNGC	2 cut(s)	349, 417
BlsI	GCNGC	2 cut(s)	350, 418
Bme1390I	CCNGG	4 cut(s)	12, 686, 699, 742
Bme18I	GGWCC	1 cut(s)	790
BmgBI	CACGTC	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	251, 790
BmiI	GGNNCC	3 cut(s)	252, 511, 807
BmrFI	CCNGG	4 cut(s)	12, 686, 699, 742
BmsI	GCATC	4 cut(s)	270, 299, 475, 531
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	372, 505, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 452, 519, 662, 815
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	715
BseBI	CCWGG	4 cut(s)	12, 686, 699, 742
BseDI	CCNNGG	3 cut(s)	372, 505, 741
BseGI	GGATG	5 cut(s)	178, 285, 290, 535, 671
BseLI	CCNNNNNNNGG	5 cut(s)	22, 452, 519, 662, 815
BseMI	GCAATG	1 cut(s)	715
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	335, 428
BseYI	CCCAGC	2 cut(s)	382, 811
BshFI	GGCC	4 cut(s)	15, 186, 253, 752
BsiSI	CCGG	3 cut(s)	93, 119, 753
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	5 cut(s)	22, 452, 519, 662, 815
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	4 cut(s)	15, 186, 253, 752
Bsp143I	GATC	2 cut(s)	175, 805
BspACI	CCGC	2 cut(s)	276, 833
BspANI	GGCC	4 cut(s)	15, 186, 253, 752
BspLI	GGNNCC	3 cut(s)	252, 511, 807
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	2 cut(s)	800, 813
BsrBI	CCGCTC	1 cut(s)	835
BsrDI	GCAATG	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	372, 505, 741
BssMI	GATC	2 cut(s)	175, 805
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	4 cut(s)	12, 686, 699, 742
Bst4CI	ACNGT	2 cut(s)	451, 472
BstC8I	GCNNGC	5 cut(s)	188, 339, 672, 735, 817
BstDEI	CTNAG	1 cut(s)	657
BstF5I	GGATG	5 cut(s)	178, 285, 290, 535, 671
BstKTI	GATC	2 cut(s)	178, 808
BstMBI	GATC	2 cut(s)	175, 805
BstNI	CCWGG	4 cut(s)	12, 686, 699, 742
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	4 cut(s)	10, 684, 697, 740
BstSFI	CTRYAG	3 cut(s)	335, 450, 606
BstV1I	GCAGC	2 cut(s)	335, 428
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	4 cut(s)	15, 186, 253, 752
BtrI	CACGTC	1 cut(s)	787
BtsCI	GGATG	5 cut(s)	178, 285, 290, 535, 671
BtsI	GCAGTG	2 cut(s)	36, 285
BtsIMutI	CAGTG	2 cut(s)	36, 285
Cac8I	GCNNGC	5 cut(s)	188, 339, 672, 735, 817
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	251, 790
Csp6I	GTAC	3 cut(s)	233, 270, 456
CviAII	CATG	2 cut(s)	551, 734
CviQI	GTAC	3 cut(s)	233, 270, 456
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	2 cut(s)	177, 807
DpnII	GATC	2 cut(s)	175, 805
EaeI	YGGCCR	3 cut(s)	13, 184, 750
Eco130I	CCWWGG	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	790
EcoRII	CCWGG	4 cut(s)	10, 684, 697, 740
EcoT14I	CCWWGG	1 cut(s)	505
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	2 cut(s)	554, 737
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	2 cut(s)	550, 733
FauI	CCCGC	1 cut(s)	269
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	349, 417
FokI	GGATG	5 cut(s)	185, 277, 292, 522, 678
Fsp4HI	GCNGC	2 cut(s)	349, 417
FspBI	CTAG	2 cut(s)	237, 356
GluI	GCNGC	2 cut(s)	349, 417
GsaI	CCCAGC	2 cut(s)	386, 815
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	4 cut(s)	15, 186, 253, 752
HapII	CCGG	3 cut(s)	93, 119, 753
Hin1II	CATG	2 cut(s)	554, 737
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	4 cut(s)	43, 651, 681, 796
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	3 cut(s)	93, 119, 753
HphI	GGTGA	3 cut(s)	307, 440, 475
Hpy166II	GTNNAC	4 cut(s)	88, 367, 475, 790
Hpy188I	TCNGA	2 cut(s)	103, 540
Hpy188III	TCNNGA	3 cut(s)	170, 585, 766
Hpy8I	GTNNAC	4 cut(s)	88, 367, 475, 790
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	2 cut(s)	451, 472
HpyCH4IV	ACGT	5 cut(s)	97, 231, 307, 516, 786
HpyCH4V	TGCA	9 cut(s)	74, 246, 283, 290, 337, 351, 416, 488, 544
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	5 cut(s)	97, 231, 307, 516, 786
Hsp92II	CATG	2 cut(s)	554, 737
KspAI	GTTAAC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	175, 805
LmnI	GCTCC	1 cut(s)	840
Lsp1109I	GCAGC	2 cut(s)	335, 428
LweI	GCATC	4 cut(s)	270, 299, 475, 531
MaeI	CTAG	2 cut(s)	237, 356
MaeII	ACGT	5 cut(s)	97, 231, 307, 516, 786
MaeIII	GTNAC	2 cut(s)	121, 313
MalI	GATC	2 cut(s)	177, 807
MbiI	CCGCTC	1 cut(s)	835
MboI	GATC	2 cut(s)	175, 805
MboII	GAAGA	5 cut(s)	42, 185, 371, 591, 781
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	1 cut(s)	805
MlsI	TGGCCA	2 cut(s)	15, 186
MluCI	AATT	8 cut(s)	58, 132, 139, 165, 211, 241, 589, 841
MluNI	TGGCCA	2 cut(s)	15, 186
MlyI	GAGTC	2 cut(s)	660, 790
MmeI	TCCRAC	3 cut(s)	221, 470, 600
MnlI	CCTC	2 cut(s)	367, 834
Mox20I	TGGCCA	2 cut(s)	15, 186
Mph1103I	ATGCAT	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	441
MscI	TGGCCA	2 cut(s)	15, 186
MseI	TTAA	5 cut(s)	138, 296, 474, 840, 844
MslI	CAYNNNNRTG	1 cut(s)	549
Msp20I	TGGCCA	2 cut(s)	15, 186
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	93, 119, 753
MspR9I	CCNGG	4 cut(s)	12, 686, 699, 742
MunI	CAATTG	1 cut(s)	241
MvaI	CCWGG	4 cut(s)	12, 686, 699, 742
NdeII	GATC	2 cut(s)	175, 805
NlaIII	CATG	2 cut(s)	554, 737
NlaIV	GGNNCC	3 cut(s)	252, 511, 807
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	1 cut(s)	737
PacI	TTAATTAA	1 cut(s)	844
PaeI	GCATGC	1 cut(s)	737
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	43, 681
PflMI	CCANNNNNTGG	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	697
PkrI	GCNGC	2 cut(s)	350, 418
PleI	GAGTC	2 cut(s)	659, 790
PpsI	GAGTC	2 cut(s)	659, 790
PshBI	ATTAAT	1 cut(s)	138
Psp1406I	AACGTT	2 cut(s)	307, 516
Psp6I	CCWGG	4 cut(s)	10, 684, 697, 740
PspFI	CCCAGC	2 cut(s)	382, 811
PspGI	CCWGG	4 cut(s)	10, 684, 697, 740
PspN4I	GGNNCC	3 cut(s)	252, 511, 807
PspPI	GGNCC	2 cut(s)	251, 790
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	805
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	3 cut(s)	234, 271, 457
RsaNI	GTAC	3 cut(s)	233, 270, 456
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	138, 296, 474, 840, 844
SatI	GCNGC	2 cut(s)	349, 417
Sau3AI	GATC	2 cut(s)	175, 805
Sau96I	GGNCC	2 cut(s)	251, 790
SchI	GAGTC	2 cut(s)	660, 790
ScrFI	CCNGG	4 cut(s)	12, 686, 699, 742
SfaNI	GCATC	4 cut(s)	270, 299, 475, 531
SfcI	CTRYAG	3 cut(s)	335, 450, 606
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
SphI	GCATGC	1 cut(s)	737
Sse9I	AATT	8 cut(s)	58, 132, 139, 165, 211, 241, 589, 841
SsiI	CCGC	2 cut(s)	276, 833
SspMI	CTAG	2 cut(s)	237, 356
StyD4I	CCNGG	4 cut(s)	10, 684, 697, 740
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	451, 472
TaiI	ACGT	5 cut(s)	100, 234, 310, 519, 789
TaqI	TCGA	1 cut(s)	111
TasI	AATT	8 cut(s)	58, 132, 139, 165, 211, 241, 589, 841
TfiI	GAWTC	2 cut(s)	43, 681
Tru1I	TTAA	5 cut(s)	138, 296, 474, 840, 844
Tru9I	TTAA	5 cut(s)	138, 296, 474, 840, 844
TscAI	CASTG	2 cut(s)	43, 292
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	348, 416
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	450, 539, 591
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	2 cut(s)	43, 292
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	790
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	2 cut(s)	211, 589
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	2 cut(s)	237, 356
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.