FvH4_3g21510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006631
Physical Location & Seq
Forward (+)
14622847 .. 14625146
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21510.t1

Sequence Viewer

Length: 942 bp
ATGGGAGGCGGCGTGATGAGGACGGCGGCGAAGGTGGCCGGGATCGGCAGCGTCATGCAGGGCGGGATCCGGGGATCGCCGGCGGTGCCGTCGTCCGGGAAGTCGATGCGGACGGCCTCGATCCCCGTCGCGGCGGGGGTATCGGCGCAGAGCTTGAAGGGGAGTGACGCCGGGGTGATCGAGAAGCAGCGGGTGGAGGCGACGGTGGATGATTTTGTGGACTGGCAAGTCGTCGGCGGCGAAGATGAGTTGGTGATGTCAGCAGGCGAGCCGATGCCGAGGGTTGTGTTCGGCGCCGCGCCGAGCTTCAAGGAGGCCAAAGAGGCCACCGCTGAGTTGAAAGATGCTCTCGATAAGGCATACTTATCTTCACCCAAAATTACTGAGCTGGAAGACCCGACTGCTGCTGACAAGGTGTCTGGGCAGTCTCTGTTTTCAAACCCTGGAGCCGAAACAGAATCTGTTCTTGTAACTAGGACTTCAGTGCCACAACATGCTTATAAGGCATTTGAACTGCTGAGTCGAAGTCCTGAGGCTCAGAATGTTGTTGCTTCAATTGCAAGTGACCCGAATGTCTGGAATGCTATGATTGAAAACTCTGCTGTCAAACAATTCATGGAGTCTCAAAAAAACTTAAACCAGGATCCTTATGACTCCGCTTCAGATTCTGAGGTTTTCAATCCTGTATCTTCAAAGGAGGTCAAGGAGGAATTTGATTCAAGCCAATCTTTTGACTTGGAACATCTGTTCAATGGTTTTGTGGATAAAGTCAAGCTTACCGTCAATACCATTGTCAGCAATTTGTCGACATACATTCAGAACATTTTCGAACCCCCTGCAGATGACAATGGCGACAATGGCTCTCCCAGAACTGTTATAGCATCTGGGTTCATGGGACTGGCAATTATGGTTGTAATGGTGGTTTTGCTGAAGCGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

33.17

Weight (kDa)

4.67

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AasI GACNNNNNNGTC 2 cut(s) 227, 572
AccB1I GGYRCC 2 cut(s) 85, 293
AccI GTMKAC 1 cut(s) 806
AccII CGCG 2 cut(s) 131, 299
AclWI GGATC 7 cut(s) 50, 61, 74, 82, 115, 638, 651
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 2 cut(s) 465, 645
AcyI GRCGYC 2 cut(s) 168, 294
AfiI CCNNNNNNNGG 2 cut(s) 95, 130
AhdI GACNNNNNGTC 1 cut(s) 415
AjnI CCWGG 2 cut(s) 442, 639
AloI GAACNNNNNNTCC 2 cut(s) 731, 763
AluBI AGCT 4 cut(s) 153, 306, 388, 775
AluI AGCT 4 cut(s) 153, 306, 388, 775
Alw26I GTCTC 2 cut(s) 432, 627
AlwI GGATC 7 cut(s) 50, 61, 74, 82, 115, 638, 651
AlwNI CAGNNNCTG 3 cut(s) 430, 461, 668
AoxI GGCC 4 cut(s) 36, 114, 315, 324
ApeKI GCWGC 3 cut(s) 48, 187, 404
ApoI RAATTY 1 cut(s) 710
Asp700I GAANNNNTTC 2 cut(s) 462, 824
AspLEI GCGC 3 cut(s) 148, 296, 301
AsuC2I CCSGG 4 cut(s) 40, 71, 97, 172
AsuHPI GGTGA 3 cut(s) 187, 265, 363
AsuII TTCGAA 1 cut(s) 828
AxyI CCTNAGG 1 cut(s) 531
BamHI GGATCC 2 cut(s) 66, 643
BanI GGYRCC 2 cut(s) 85, 293
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 3 cut(s) 60, 199, 391
BceAI ACGGC 3 cut(s) 39, 73, 129
BcgI CGANNNNNNTGC 2 cut(s) 818, 852
BciT130I CCWGG 2 cut(s) 444, 641
BcnI CCSGG 4 cut(s) 40, 71, 97, 172
BcoDI GTCTC 2 cut(s) 432, 627
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 837
BfoI RGCGCY 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 8 cut(s) 10, 27, 49, 132, 188, 238, 297, 405
BlsI GCNGC 8 cut(s) 11, 28, 50, 133, 189, 239, 298, 406
Bme1390I CCNGG 6 cut(s) 40, 71, 97, 172, 444, 641
BmeRI GACNNNNNGTC 1 cut(s) 415
BmiI GGNNCC 5 cut(s) 68, 87, 295, 448, 645
BmrFI CCNGG 6 cut(s) 40, 71, 97, 172, 444, 641
BmsI GCATC 4 cut(s) 96, 264, 334, 890
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 828
BpuMI CCSGG 4 cut(s) 40, 71, 97, 172
BsaHI GRCGYC 2 cut(s) 168, 294
BsaJI CCNNGG 4 cut(s) 70, 171, 278, 442
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 130
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 227, 903
Bse21I CCTNAGG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 444, 641
BseDI CCNNGG 4 cut(s) 70, 171, 278, 442
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 95, 130
BseMII CTCAG 6 cut(s) 324, 375, 509, 522, 551, 660
BseNI ACTGG 2 cut(s) 227, 903
BseXI GCAGC 3 cut(s) 60, 199, 391
Bsh1236I CGCG 2 cut(s) 131, 299
BshFI GGCC 4 cut(s) 38, 116, 317, 326
BshNI GGYRCC 2 cut(s) 85, 293
BsiSI CCGG 5 cut(s) 39, 70, 80, 96, 171
BslFI GGGAC 1 cut(s) 909
BslI CCNNNNNNNGG 2 cut(s) 95, 130
BsmAI GTCTC 2 cut(s) 432, 627
BsmFI GGGAC 1 cut(s) 909
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 4 cut(s) 38, 116, 317, 326
Bsp119I TTCGAA 1 cut(s) 828
Bsp143I GATC 6 cut(s) 42, 66, 74, 120, 177, 643
BspANI GGCC 4 cut(s) 38, 116, 317, 326
BspCNI CTCAG 6 cut(s) 325, 376, 510, 523, 550, 661
BspFNI CGCG 2 cut(s) 131, 299
BspLI GGNNCC 5 cut(s) 68, 87, 295, 448, 645
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 7 cut(s) 50, 61, 74, 82, 115, 638, 651
BspT104I TTCGAA 1 cut(s) 828
BspT107I GGYRCC 2 cut(s) 85, 293
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 227, 903
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 4 cut(s) 70, 171, 278, 442
BssMI GATC 6 cut(s) 42, 66, 74, 120, 177, 643
BssNI GRCGYC 2 cut(s) 168, 294
Bst2UI CCWGG 2 cut(s) 444, 641
Bst4CI ACNGT 3 cut(s) 205, 781, 874
BstACI GRCGYC 2 cut(s) 168, 294
BstBI TTCGAA 1 cut(s) 828
BstC8I GCNNGC 4 cut(s) 81, 265, 269, 936
BstDEI CTNAG 6 cut(s) 333, 384, 518, 531, 537, 669
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 2 cut(s) 131, 299
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 3 cut(s) 148, 296, 301
BstKTI GATC 6 cut(s) 45, 69, 77, 123, 180, 646
BstMAI GTCTC 2 cut(s) 432, 627
BstMBI GATC 6 cut(s) 42, 66, 74, 120, 177, 643
BstMWI GCNNNNNNNGC 6 cut(s) 35, 85, 323, 503, 557, 858
BstNI CCWGG 2 cut(s) 444, 641
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 6 cut(s) 38, 69, 95, 170, 442, 639
BstSFI CTRYAG 1 cut(s) 837
BstUI CGCG 2 cut(s) 131, 299
BstV1I GCAGC 3 cut(s) 60, 199, 391
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 66, 643
BstYI RGATCY 2 cut(s) 66, 643
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 4 cut(s) 38, 116, 317, 326
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 4 cut(s) 81, 265, 269, 936
CaiI CAGNNNCTG 3 cut(s) 430, 461, 668
CfoI GCGC 3 cut(s) 148, 296, 301
Cfr10I RCCGGY 1 cut(s) 79
CseI GACGC 2 cut(s) 40, 176
CviAII CATG 4 cut(s) 55, 494, 616, 892
DdeI CTNAG 6 cut(s) 333, 384, 518, 531, 537, 669
DinI GGCGCC 1 cut(s) 295
DpnI GATC 6 cut(s) 44, 68, 76, 122, 179, 645
DpnII GATC 6 cut(s) 42, 66, 74, 120, 177, 643
DrdI GACNNNNNNGTC 2 cut(s) 227, 572
DriI GACNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 2 cut(s) 227, 572
EaeI YGGCCR 1 cut(s) 36
Eam1105I GACNNNNNGTC 1 cut(s) 415
Eco57I CTGAAG 2 cut(s) 465, 645
Eco81I CCTNAGG 1 cut(s) 531
EcoRII CCWGG 2 cut(s) 442, 639
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
FaeI CATG 4 cut(s) 58, 497, 619, 895
FalI AAGNNNNNCTT 6 cut(s) 347, 379, 712, 744, 759, 791
FaqI GGGAC 1 cut(s) 909
FatI CATG 4 cut(s) 54, 493, 615, 891
FauI CCCGC 3 cut(s) 56, 127, 183
FblI GTMKAC 1 cut(s) 806
Fnu4HI GCNGC 8 cut(s) 10, 27, 49, 132, 188, 238, 297, 405
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 8 cut(s) 10, 27, 49, 132, 188, 238, 297, 405
FspBI CTAG 1 cut(s) 474
GlaI GCGC 3 cut(s) 147, 295, 300
GluI GCNGC 8 cut(s) 10, 27, 49, 132, 188, 238, 297, 405
GsuI CTGGAG 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 4 cut(s) 38, 116, 317, 326
HapII CCGG 5 cut(s) 39, 70, 80, 96, 171
HgaI GACGC 2 cut(s) 40, 176
HhaI GCGC 3 cut(s) 148, 296, 301
Hin1I GRCGYC 2 cut(s) 168, 294
Hin1II CATG 4 cut(s) 58, 497, 619, 895
Hin6I GCGC 3 cut(s) 146, 294, 299
HinP1I GCGC 3 cut(s) 146, 294, 299
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 773
HinfI GANTC 6 cut(s) 458, 520, 620, 653, 665, 716
HpaII CCGG 5 cut(s) 39, 70, 80, 96, 171
HphI GGTGA 3 cut(s) 187, 265, 363
Hpy166II GTNNAC 2 cut(s) 220, 807
Hpy188I TCNGA 4 cut(s) 540, 664, 670, 819
Hpy188III TCNNGA 4 cut(s) 181, 350, 530, 577
Hpy8I GTNNAC 2 cut(s) 220, 807
Hpy99I CGWCG 4 cut(s) 94, 131, 205, 236
HpyAV CCTTC 2 cut(s) 25, 151
HpyCH4III ACNGT 3 cut(s) 205, 781, 874
HpyCH4V TGCA 3 cut(s) 58, 560, 839
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 85, 323, 503, 557, 858
HpyF3I CTNAG 6 cut(s) 333, 384, 518, 531, 537, 669
Hsp92I GRCGYC 2 cut(s) 168, 294
Hsp92II CATG 4 cut(s) 58, 497, 619, 895
HspAI GCGC 3 cut(s) 146, 294, 299
KasI GGCGCC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 6 cut(s) 42, 66, 74, 120, 177, 643
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 3 cut(s) 60, 199, 391
LweI GCATC 4 cut(s) 96, 264, 334, 890
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 3 cut(s) 164, 469, 563
MalI GATC 6 cut(s) 44, 68, 76, 122, 179, 645
MboI GATC 6 cut(s) 42, 66, 74, 120, 177, 643
MboII GAAGA 4 cut(s) 254, 360, 404, 681
MfeI CAATTG 1 cut(s) 555
MflI RGATCY 2 cut(s) 66, 643
MluCI AATT 6 cut(s) 378, 555, 611, 710, 799, 903
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 3 cut(s) 529, 629, 647
MreI CGCCGGCG 1 cut(s) 79
MroNI GCCGGC 1 cut(s) 79
MroXI GAANNNNTTC 2 cut(s) 462, 824
MseI TTAA 1 cut(s) 635
MspA1I CMGCKG 2 cut(s) 190, 332
MspI CCGG 5 cut(s) 39, 70, 80, 96, 171
MspR9I CCNGG 6 cut(s) 40, 71, 97, 172, 444, 641
MteI GCGCNGCGC 1 cut(s) 297
MunI CAATTG 1 cut(s) 555
Mva1269I GAATGC 1 cut(s) 586
MvaI CCWGG 2 cut(s) 444, 641
MvnI CGCG 2 cut(s) 131, 299
MwoI GCNNNNNNNGC 6 cut(s) 35, 85, 323, 503, 557, 858
NaeI GCCGGC 1 cut(s) 81
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 4 cut(s) 40, 71, 97, 172
NdeII GATC 6 cut(s) 42, 66, 74, 120, 177, 643
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 4 cut(s) 58, 497, 619, 895
NlaIV GGNNCC 5 cut(s) 68, 87, 295, 448, 645
NmeAIII GCCGAG 2 cut(s) 303, 327
NmuCI GTSAC 2 cut(s) 164, 563
NspI RCATGY 1 cut(s) 497
NspV TTCGAA 1 cut(s) 828
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 81
PdmI GAANNNNTTC 2 cut(s) 462, 824
PfeI GAWTC 3 cut(s) 458, 665, 716
PfoI TCCNGGA 1 cut(s) 95
PkrI GCNGC 8 cut(s) 11, 28, 50, 133, 189, 239, 298, 406
PleI GAGTC 3 cut(s) 528, 628, 647
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 3 cut(s) 528, 628, 647
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 2 cut(s) 442, 639
PspGI CCWGG 2 cut(s) 442, 639
PspN4I GGNNCC 5 cut(s) 68, 87, 295, 448, 645
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 3 cut(s) 430, 461, 668
PsuI RGATCY 2 cut(s) 66, 643
SalI GTCGAC 1 cut(s) 805
SaqAI TTAA 1 cut(s) 635
SatI GCNGC 8 cut(s) 10, 27, 49, 132, 188, 238, 297, 405
Sau3AI GATC 6 cut(s) 42, 66, 74, 120, 177, 643
SchI GAGTC 3 cut(s) 529, 629, 647
ScrFI CCNGG 6 cut(s) 40, 71, 97, 172, 444, 641
SetI ASST 8 cut(s) 36, 155, 308, 390, 417, 675, 702, 777
SfaNI GCATC 4 cut(s) 96, 264, 334, 890
SfcI CTRYAG 1 cut(s) 837
SfiI GGCCNNNNNGGCC 1 cut(s) 323
SfoI GGCGCC 1 cut(s) 295
SfuI TTCGAA 1 cut(s) 828
SgrAI CRCCGGYG 1 cut(s) 79
Sse9I AATT 6 cut(s) 378, 555, 611, 710, 799, 903
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 6 cut(s) 38, 69, 95, 170, 442, 639
TaaI ACNGT 3 cut(s) 205, 781, 874
TaqI TCGA 7 cut(s) 104, 119, 180, 351, 523, 806, 828
TasI AATT 6 cut(s) 378, 555, 611, 710, 799, 903
TauI GCSGC 5 cut(s) 12, 29, 134, 240, 299
TfiI GAWTC 3 cut(s) 458, 665, 716
Tru1I TTAA 1 cut(s) 635
Tru9I TTAA 1 cut(s) 635
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 2 cut(s) 164, 563
TseI GCWGC 3 cut(s) 48, 187, 404
Tsp45I GTSAC 2 cut(s) 164, 563
TspDTI ATGAA 2 cut(s) 604, 880
TspRI CASTG 1 cut(s) 489
XapI RAATTY 1 cut(s) 710
XceI RCATGY 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 806
XmnI GAANNNNTTC 2 cut(s) 462, 824
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.