Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006631

Physical Location & Seq

Genomic Coordinates Forward (+)

12078246 .. 12080799

Gene Structure 2554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G197300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGGAGGCGGAGTCATGAGGGCGGCGGCTAAGGTGGCGGGGATCGGCGGCGTTGTTCCCGGCGGCATGCTTCGTGGCGCGCCGGTTCCATCGCCGTCCGGTCAGTCCATCCGAAAGGCCTCGATCCCCGTCGCCGCGACCCTCACGGCTGAGAATGTCGGCGGGGTTGACGTGTCTCCGATCGAGAAGACGGCGTTGGATGCGATGGACGACTTCGTCGACTGGCAAGTGGTCGGCGCCGCAGGCGAGGAGCTGGTGATGTCGGCCGGCGAGCCGATGCCGAGAGTCGTCTTCGACGCCGCGCCGAGCTTCAAGGAGGCCAGAGAGGCCACCACTGAATTGAAAGACGCCCTCGATAAGATATATCTGTCTTCACCCAAATCTACTGAATTTGGGGAGCAGTCTGCTACTGATAAGGTTTCTGGGCTGTCTCAAATTATGAACCCTGAACCTGAGGAGGTGGAATCCCTGCTTCTTACTAGGACTTCCGTGCCAAAACATGCTTTTCAGGCATTTGAAATGCTGAGTAGAAGTACTGAAGCTCAGAATGTTGTTGCTTCAATTGCAAGCGACCCAAATATCTGGAATGCTATGATGGAAAATTCTGCGGTCAAGCAATTCTTGAAGTCCAACAAGGACTATAATCTTTATGAGCCCAAATATGCGTCAGATACTGAGTTTTCTGATCCAGTATCACCCAAGGAGCATGAAGACAAAGACAAATCTGATGGGTTTGAGGCTGTGCTCCGTGGTTTTGTGCAGAAAATCAAGCTTACCGTGGATAGGTGGGTGGGCGATTTGTCAACTTACATCCAGAATATTTTTCCCTCCCCAGCTGAGAATGGAGATGCAGATGAGAATGGGAATACGAAGACGGTAGCATCTGCATTCATGGGGCTGGCAGTTATGGTTGTTATGGTGGTTTTGATGAAGCGTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

33.5

Weight (kDa)

4.71

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54540
fragaria_vesca	FvH4_3g21510
malus_domestica	MD03G1215500.v1.1 MD11G1230100.v1.1
prunus_persica	Prupe.4G098000_v2.0.a1 Prupe.4G197300_v2.0.a1 Prupe.5G070000_v2.0.a1
pyrus_communis	pycom03g16390 pycom10g14480 pycom11g20390
rosa_chinensis	RchiOBHm_Chr5g0036951
rosa_laevigata	RLG00000011241 RLG00000033738
rosa_multiflora	Rmu_sc0006147.1_g000006 Rmu_sc0007663.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044010 Rroxscaffold_7G00166630
rosa_rugosa	Rorug05G0159300 Rorug06G0306700
rosa_samantha	Rh5AG251500 Rh5BG252900 Rh5CG285500 Rh5DG261600 Rh6BG426000 Rh6DG419300
rosa_wichuraiana	Rw5G023150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	3 cut(s)	80, 137, 302
AclWI	GGATC	3 cut(s)	50, 118, 680
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	389, 601
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	3 cut(s)	237, 297, 348
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	783
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	5 cut(s)	313, 343, 518, 561, 625
AjiI	CACGTC	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	5 cut(s)	253, 309, 542, 772, 836
AluI	AGCT	5 cut(s)	253, 309, 542, 772, 836
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	2 cut(s)	180, 435
AlwI	GGATC	3 cut(s)	50, 118, 680
AlwNI	CAGNNNCTG	1 cut(s)	674
AoxI	GGCC	4 cut(s)	117, 264, 318, 327
ApoI	RAATTY	2 cut(s)	389, 601
AscI	GGCGCGCC	1 cut(s)	78
AspLEI	GCGC	4 cut(s)	80, 82, 239, 304
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	3 cut(s)	268, 366, 687
AxyI	CCTNAGG	1 cut(s)	453
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	657
BbsI	GAAGAC	5 cut(s)	194, 283, 363, 717, 878
Bbv12I	GWGCWC	1 cut(s)	747
BccI	CCATC	5 cut(s)	97, 116, 199, 589, 722
BceAI	ACGGC	3 cut(s)	79, 162, 207
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	180, 435
BfaI	CTAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	240
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	7 cut(s)	24, 27, 49, 64, 135, 240, 300
BlsI	GCNGC	7 cut(s)	25, 28, 50, 65, 136, 241, 301
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	87, 238
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	4 cut(s)	190, 267, 838, 890
BpiI	GAAGAC	5 cut(s)	194, 283, 363, 717, 878
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	3 cut(s)	237, 297, 348
BsaJI	CCNNGG	3 cut(s)	699, 748, 777
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	783
Bse118I	RCCGGY	2 cut(s)	82, 266
Bse1I	ACTGG	2 cut(s)	227, 689
Bse21I	CCTNAGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	699, 748, 777
BseGI	GGATG	3 cut(s)	108, 205, 810
BseLI	CCNNNNNNNGG	1 cut(s)	783
BseMII	CTCAG	6 cut(s)	141, 444, 515, 557, 666, 828
BseNI	ACTGG	2 cut(s)	227, 689
BsePI	GCGCGC	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	263, 470
BseX3I	CGGCCG	1 cut(s)	264
BseYI	CCCAGC	1 cut(s)	832
BsgI	GTGCAG	1 cut(s)	779
Bsh1236I	CGCG	3 cut(s)	80, 137, 302
Bsh1285I	CGRYCG	2 cut(s)	183, 267
BshFI	GGCC	4 cut(s)	119, 266, 320, 329
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	2 cut(s)	183, 267
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	4 cut(s)	60, 83, 99, 267
BslI	CCNNNNNNNGG	1 cut(s)	783
BsmAI	GTCTC	2 cut(s)	180, 435
BsmI	GAATGC	2 cut(s)	592, 887
BsnI	GGCC	4 cut(s)	119, 266, 320, 329
Bsp1286I	GDGCHC	2 cut(s)	657, 747
Bsp143I	GATC	4 cut(s)	42, 123, 180, 685
BspANI	GGCC	4 cut(s)	119, 266, 320, 329
BspCNI	CTCAG	6 cut(s)	142, 445, 516, 556, 667, 829
BspFNI	CGCG	3 cut(s)	80, 137, 302
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	87, 238
BspPI	GGATC	3 cut(s)	50, 118, 680
BspT107I	GGYRCC	1 cut(s)	236
BsrFI	RCCGGY	2 cut(s)	82, 266
BsrI	ACTGG	2 cut(s)	227, 689
BssAI	RCCGGY	2 cut(s)	82, 266
BssECI	CCNNGG	3 cut(s)	699, 748, 777
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	4 cut(s)	42, 123, 180, 685
BssNI	GRCGYC	3 cut(s)	237, 297, 348
BssT1I	CCWWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	778, 877
BstACI	GRCGYC	3 cut(s)	237, 297, 348
BstC8I	GCNNGC	7 cut(s)	68, 80, 244, 268, 272, 568, 900
BstDEI	CTNAG	7 cut(s)	30, 150, 453, 524, 543, 675, 837
BstDSI	CCRYGG	2 cut(s)	748, 777
BstF5I	GGATG	3 cut(s)	108, 205, 810
BstFNI	CGCG	3 cut(s)	80, 137, 302
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	4 cut(s)	80, 82, 239, 304
BstKTI	GATC	4 cut(s)	45, 126, 183, 688
BstMAI	GTCTC	2 cut(s)	180, 435
BstMBI	GATC	4 cut(s)	42, 123, 180, 685
BstMCI	CGRYCG	2 cut(s)	183, 267
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 200, 243, 326, 509, 563
BstNSI	RCATGY	2 cut(s)	70, 503
BstSCI	CCNGG	1 cut(s)	58
BstUI	CGCG	3 cut(s)	80, 137, 302
BstV2I	GAAGAC	5 cut(s)	194, 283, 363, 717, 878
BstXI	CCANNNNNNTGG	1 cut(s)	582
BstZI	CGGCCG	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	4 cut(s)	119, 266, 320, 329
BtgI	CCRYGG	2 cut(s)	748, 777
BtgZI	GCGATG	2 cut(s)	75, 218
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	108, 205, 810
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	7 cut(s)	68, 80, 244, 268, 272, 568, 900
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	4 cut(s)	80, 82, 239, 304
Cfr10I	RCCGGY	2 cut(s)	82, 266
CseI	GACGC	3 cut(s)	305, 356, 654
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	5 cut(s)	16, 67, 500, 707, 892
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	7 cut(s)	30, 150, 453, 524, 543, 675, 837
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	4 cut(s)	44, 125, 182, 687
DpnII	GATC	4 cut(s)	42, 123, 180, 685
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	264
EagI	CGGCCG	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	24
EclXI	CGGCCG	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	699
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	657
Eco52I	CGGCCG	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	558
Eco81I	CCTNAGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	657
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	5 cut(s)	19, 70, 503, 710, 895
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	5 cut(s)	15, 66, 499, 706, 891
FauI	CCCGC	2 cut(s)	31, 155
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	7 cut(s)	24, 27, 49, 64, 135, 240, 300
FokI	GGATG	3 cut(s)	95, 212, 797
FriOI	GRGCYC	1 cut(s)	657
Fsp4HI	GCNGC	7 cut(s)	24, 27, 49, 64, 135, 240, 300
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	4 cut(s)	79, 81, 238, 303
GluI	GCNGC	7 cut(s)	24, 27, 49, 64, 135, 240, 300
GsaI	CCCAGC	1 cut(s)	836
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	4 cut(s)	119, 266, 320, 329
HapII	CCGG	4 cut(s)	60, 83, 99, 267
HgaI	GACGC	3 cut(s)	305, 356, 654
HhaI	GCGC	4 cut(s)	80, 82, 239, 304
Hin1I	GRCGYC	3 cut(s)	237, 297, 348
Hin1II	CATG	5 cut(s)	19, 70, 503, 710, 895
Hin6I	GCGC	4 cut(s)	78, 80, 237, 302
HinP1I	GCGC	4 cut(s)	78, 80, 237, 302
HincII	GTYRAC	3 cut(s)	169, 220, 804
HindII	GTYRAC	3 cut(s)	169, 220, 804
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	3 cut(s)	12, 285, 464
HpaII	CCGG	4 cut(s)	60, 83, 99, 267
HphI	GGTGA	3 cut(s)	268, 366, 687
Hpy166II	GTNNAC	3 cut(s)	169, 220, 804
Hpy188I	TCNGA	6 cut(s)	113, 180, 546, 670, 685, 727
Hpy188III	TCNNGA	5 cut(s)	16, 184, 583, 622, 814
Hpy8I	GTNNAC	3 cut(s)	169, 220, 804
Hpy99I	CGWCG	3 cut(s)	134, 221, 299
HpyCH4III	ACNGT	2 cut(s)	778, 877
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	566, 760, 851, 887
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 200, 243, 326, 509, 563
HpyF3I	CTNAG	7 cut(s)	30, 150, 453, 524, 543, 675, 837
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	3 cut(s)	237, 297, 348
Hsp92II	CATG	5 cut(s)	19, 70, 503, 710, 895
HspAI	GCGC	4 cut(s)	78, 80, 237, 302
KasI	GGCGCC	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	42, 123, 180, 685
LmnI	GCTCC	4 cut(s)	250, 397, 703, 750
LweI	GCATC	4 cut(s)	190, 267, 838, 890
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	171
MalI	GATC	4 cut(s)	44, 125, 182, 687
MboI	GATC	4 cut(s)	42, 123, 180, 685
MboII	GAAGA	5 cut(s)	199, 283, 363, 722, 883
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	2 cut(s)	657, 747
MluCI	AATT	6 cut(s)	338, 389, 435, 561, 601, 617
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	21, 294
MmeI	TCCRAC	2 cut(s)	177, 654
MroNI	GCCGGC	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	4 cut(s)	60, 83, 99, 267
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	2 cut(s)	592, 887
MvnI	CGCG	3 cut(s)	80, 137, 302
MwoI	GCNNNNNNNGC	6 cut(s)	35, 200, 243, 326, 509, 563
NaeI	GCCGGC	1 cut(s)	268
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	4 cut(s)	42, 123, 180, 685
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	5 cut(s)	19, 70, 503, 710, 895
NlaIV	GGNNCC	2 cut(s)	87, 238
NmeAIII	GCCGAG	2 cut(s)	306, 330
NspI	RCATGY	2 cut(s)	70, 503
PaeI	GCATGC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	15
PalAI	GGCGCGCC	1 cut(s)	78
PauI	GCGCGC	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	2 cut(s)	592, 887
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	7 cut(s)	25, 28, 50, 65, 136, 241, 301
Ple19I	CGATCG	1 cut(s)	183
PleI	GAGTC	2 cut(s)	20, 293
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	2 cut(s)	20, 293
PspFI	CCCAGC	1 cut(s)	832
PspN4I	GGNNCC	2 cut(s)	87, 238
PstNI	CAGNNNCTG	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	215
PteI	GCGCGC	1 cut(s)	78
PvuI	CGATCG	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	7 cut(s)	24, 27, 49, 64, 135, 240, 300
Sau3AI	GATC	4 cut(s)	42, 123, 180, 685
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	2 cut(s)	21, 294
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	657, 747
SfaNI	GCATC	4 cut(s)	190, 267, 838, 890
SfiI	GGCCNNNNNGGCC	1 cut(s)	326
SfoI	GGCGCC	1 cut(s)	238
SgsI	GGCGCGCC	1 cut(s)	78
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	6 cut(s)	338, 389, 435, 561, 601, 617
SseBI	AGGCCT	1 cut(s)	119
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	2 cut(s)	778, 877
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	5 cut(s)	122, 183, 219, 294, 354
TasI	AATT	6 cut(s)	338, 389, 435, 561, 601, 617
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	7 cut(s)	26, 29, 51, 66, 137, 242, 302
TfiI	GAWTC	1 cut(s)	464
TscAI	CASTG	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	455, 723, 880
TspGWI	ACGGA	2 cut(s)	478, 737
TspRI	CASTG	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	389, 601
XceI	RCATGY	2 cut(s)	70, 503
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.