Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

22179700 .. 22182828

Gene Structure 3129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAGGAGAATCCAAAGGATTAATCGTTGGGATCTCACTAGGTTTGGTGATTGGTGTTGTCTTAGCTATCTCAGCTTTGTTCTGCTTTAGGTATCATAGAAAAAAGTCTCAGATTGTGAATAGTGGATCACGAAGAAGTGCAACCATTCCCATCAGAGAGAATGGAGCTGATTCGTGTAATATAATGTCGGATTCGACCATTGGTCCGGATTCACCTGTGAAATCTTCTAAGAATGGGAGGTCTGTTTGGCTTGAAGGGTTTAGTAAGAGGAGTAATGTCATCTCTGCTTCTGGCATTTTGGAATATTCTTACAGGGATTTGCAGAAAGCGACGTGTAATTTCACGACTTTGATAGGCCAAGGAGCATTTGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTGTGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGGTTATGTTATTGGGAAGGTTGCATCACCGTAACCTAGTGAACTTGATTGGATACTGTGCAGAGAAAGGCCAACACATGCTTATATATGTTTACATGAGTAAAGGAAGCTTAGCTTCTCATTTATACAGCGAAAAACATGAACCGCTGAGCTGGGATTTGAGAGTATATATTGCTTTAGACGTGGCACGTGGTCTAGAGTATCTTCATGATGGGGTAAGCTGCTTGCTAAAACCATTCACCATTTTAATGCATCTCTTAAACAACAACTTCAAAACTCATGTTCTAATCAATTGTTCCAGGCTGTTCCTCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

261

Amino Acids

28.89

Weight (kDa)

9.18

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	115 - 376	2.7e-50	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	117 - 374	1.2e-48	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	381, 398
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	614
AclWI	GGATC	2 cut(s)	41, 136
AcvI	CACGTG	1 cut(s)	659
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	257, 742
AhdI	GACNNNNNGTC	1 cut(s)	204
AjiI	CACGTC	2 cut(s)	336, 652
AjnI	CCWGG	1 cut(s)	767
AluBI	AGCT	8 cut(s)	68, 77, 170, 389, 579, 584, 621, 690
AluI	AGCT	8 cut(s)	68, 77, 170, 389, 579, 584, 621, 690
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	41, 136
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	2 cut(s)	358, 538
ApeKI	GCWGC	1 cut(s)	690
AseI	ATTAAT	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	206, 374
AsuHPI	GGTGA	5 cut(s)	61, 207, 416, 488, 700
AvaII	GGWCC	2 cut(s)	206, 374
BbrPI	CACGTG	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	677
BccI	CCATC	2 cut(s)	161, 674
BciT130I	CCWGG	1 cut(s)	769
BciVI	GTATCC	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	41, 428, 506, 665
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	691
BlpI	GCTNAGC	2 cut(s)	580, 617
BlsI	GCNGC	1 cut(s)	692
Bme1390I	CCNGG	1 cut(s)	769
Bme18I	GGWCC	2 cut(s)	206, 374
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmgBI	CACGTC	2 cut(s)	336, 652
BmgT120I	GGNCC	2 cut(s)	206, 374
BmrFI	CCNGG	1 cut(s)	769
BmsI	GCATC	2 cut(s)	502, 730
Bpu1102I	GCTNAGC	2 cut(s)	580, 617
BsaAI	YACGTR	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	406
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	769
BseDI	CCNNGG	1 cut(s)	361
BseMII	CTCAG	3 cut(s)	87, 125, 608
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	677
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	360, 540
BsiSI	CCGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	360, 540
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	3 cut(s)	33, 128, 408
Bsp1720I	GCTNAGC	2 cut(s)	580, 617
BspACI	CCGC	1 cut(s)	614
BspANI	GGCC	2 cut(s)	360, 540
BspCNI	CTCAG	3 cut(s)	86, 124, 609
BspEI	TCCGGA	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	676
BspPI	GGATC	2 cut(s)	41, 136
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	33, 128, 408
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	1 cut(s)	769
Bst4CI	ACNGT	2 cut(s)	500, 527
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	6 cut(s)	64, 73, 111, 231, 580, 617
BstKTI	GATC	3 cut(s)	36, 131, 411
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	33, 128, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	769
BstNSI	RCATGY	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	767
BstV1I	GCAGC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	360, 540
BtrI	CACGTC	2 cut(s)	336, 652
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	695
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	2 cut(s)	206, 374
CviAII	CATG	5 cut(s)	547, 565, 608, 677, 749
DdeI	CTNAG	6 cut(s)	64, 73, 111, 231, 580, 617
DpnI	GATC	3 cut(s)	35, 130, 410
DpnII	GATC	3 cut(s)	33, 128, 408
DriI	GACNNNNNGTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	206, 374
Eco72I	CACGTG	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	5 cut(s)	550, 568, 611, 680, 752
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FatI	CATG	5 cut(s)	546, 564, 607, 676, 748
FblI	GTMKAC	2 cut(s)	381, 398
Fnu4HI	GCNGC	1 cut(s)	691
Fsp4HI	GCNGC	1 cut(s)	691
FspBI	CTAG	4 cut(s)	41, 428, 506, 665
GluI	GCNGC	1 cut(s)	691
GsaI	CCCAGC	1 cut(s)	625
HaeIII	GGCC	2 cut(s)	360, 540
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	5 cut(s)	550, 568, 611, 680, 752
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	5 cut(s)	11, 173, 194, 212, 437
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	5 cut(s)	61, 207, 416, 488, 700
Hpy166II	GTNNAC	4 cut(s)	382, 399, 511, 562
Hpy188I	TCNGA	4 cut(s)	114, 158, 193, 465
Hpy188III	TCNNGA	5 cut(s)	132, 209, 346, 665, 677
Hpy8I	GTNNAC	4 cut(s)	382, 399, 511, 562
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	251, 480
HpyCH4III	ACNGT	2 cut(s)	500, 527
HpyCH4IV	ACGT	3 cut(s)	335, 651, 658
HpyCH4V	TGCA	5 cut(s)	143, 325, 493, 530, 721
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	6 cut(s)	64, 73, 111, 231, 580, 617
HpySE526I	ACGT	3 cut(s)	335, 651, 658
Hsp92II	CATG	5 cut(s)	550, 568, 611, 680, 752
Kpn2I	TCCGGA	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	33, 128, 408
LmnI	GCTCC	2 cut(s)	167, 365
Lsp1109I	GCAGC	1 cut(s)	677
LweI	GCATC	2 cut(s)	502, 730
MaeI	CTAG	4 cut(s)	41, 428, 506, 665
MaeII	ACGT	3 cut(s)	335, 651, 658
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	35, 130, 410
MboI	GATC	3 cut(s)	33, 128, 408
MboII	GAAGA	3 cut(s)	147, 219, 665
MfeI	CAATTG	1 cut(s)	760
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	2 cut(s)	340, 760
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	234, 264, 463
Mph1103I	ATGCAT	1 cut(s)	723
MroI	TCCGGA	1 cut(s)	208
MseI	TTAA	3 cut(s)	23, 716, 728
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	769
MunI	CAATTG	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	769
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	3 cut(s)	33, 128, 408
NlaIII	CATG	5 cut(s)	550, 568, 611, 680, 752
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	1 cut(s)	550
PagI	TCATGA	1 cut(s)	676
PfeI	GAWTC	5 cut(s)	11, 173, 194, 212, 437
PkrI	GCNGC	1 cut(s)	692
PmaCI	CACGTG	1 cut(s)	659
PmlI	CACGTG	1 cut(s)	659
Ppu21I	YACGTR	1 cut(s)	659
PshBI	ATTAAT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	767
PspCI	CACGTG	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	767
PspPI	GGNCC	2 cut(s)	206, 374
PsuI	RGATCY	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	716
SaqAI	TTAA	3 cut(s)	23, 716, 728
SatI	GCNGC	1 cut(s)	691
Sau3AI	GATC	3 cut(s)	33, 128, 408
Sau96I	GGNCC	2 cut(s)	206, 374
ScrFI	CCNGG	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	502, 730
SinI	GGWCC	2 cut(s)	206, 374
SmiMI	CAYNNNNRTG	1 cut(s)	716
Sse9I	AATT	2 cut(s)	340, 760
SsiI	CCGC	1 cut(s)	614
SspI	AATATT	1 cut(s)	308
SspMI	CTAG	4 cut(s)	41, 428, 506, 665
StyD4I	CCNGG	1 cut(s)	767
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	500, 527
TaiI	ACGT	3 cut(s)	338, 654, 661
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	340, 760
TfiI	GAWTC	5 cut(s)	11, 173, 194, 212, 437
Tru1I	TTAA	3 cut(s)	23, 716, 728
Tru9I	TTAA	3 cut(s)	23, 716, 728
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	690
TspDTI	ATGAA	2 cut(s)	624, 665
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	206, 374
VspI	ATTAAT	1 cut(s)	23
XbaI	TCTAGA	1 cut(s)	664
XceI	RCATGY	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	381, 398
XspI	CTAG	4 cut(s)	41, 428, 506, 665
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.