Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

31395929 .. 31400566

Gene Structure 4638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAAGGCGAGCCAGTTGGACTGATCATTGGGGTTTCTATAGGGGTAGTGATTGGAGTGCTTTTGGCAATTTCTGGGTTCTTCTGCATTAGGTACCATAGGAAGCGTATGCAAATAGGGAACAGCAGTTCTCGAAGGGCAGCAAATCTTCCTATTCGTGCTAATGGCGCCGACTCTTGTACAATTTTGTCAGACTCGACACTTGGTCCAGACTCACCTGTCAAATCTGAACGGACTGGTGGTTCCTTCTGGCTTGTTGAAGGATTTAAGAGGAGTAATGTAGTCTCAATGTCTGGAATACCCGAGTATTCTTACAAGGATCTGCAGAAAGCAACCTATAATTTTACAACATTGATAGGGCAAGGTGCATTTGGTCCTGTGTACAAAGCTCAGATGTTAACGGGTGAGACTGTTGCCGTTAAAGTGCTTGCAACTGATTCTAAGCAAGGGGAGAAAGAGTTTCAGACAGAGGTTAAGTTATTGGGAAGATTGCATCACAGGAACCTCGTGAACTTAATTGGATACTGTGCAGAAAAAGGCCAACATATGCTTATTTATGTCTACATGAGTAAAGGGAGTTTGGCCTCTCATTTGTATGATGAAAAGAATGACCCATTGAGCTGGGATTTGAGGGTTCATGTAGCTTTAGATGTTGCAAGGGGCTTGGAGTATCTTCATGATGGAGCAGTTCCTCCTGTAATACACCGGGATATCAAATCCAACAATATCCTGTTGGATGAATCCATGAGAGCCAGGGTAGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGACAAACATGCAGCTATTAGGGGAACCTTTGGCTATCTAGATCCCGAGTATATCTCTACTAGAAATTTCACCAAGAAAAGTGATGTTTACAGCTTTGGAGTTCTGCTGTTTGAACTCATAGCTGGAAGAAATCCTCAACAGGGTCTGATGGAATATGTGGAGCTTGCGGCAATGAATACGGAGGGGAAATTTGGGTGGGAGGAAATTGTGGATTCCCGTCTTAATGGGAACTTTGATGTGCAAGAGCTCAACGAAGTGGCAGCTCTTGCATATAAATGTGTCAGCCGCTCCCCAAAAAAGCGGTCTTCCATGAGAGACATTGTACAAGTGCTATCACGAATGCTGAAAGTGAGGCACAATAGAAAGCACCATGCGAAATCATTGTCATCCACAGCAGGGGAAGTTATGATTGACGTGAACCAACCAGAAACCAAAATTCAAATGGCTGAACACCAAAGAGATGAGTCTATGGACAGCACAGCCGATACATATGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

430

Amino Acids

47.96

Weight (kDa)

8.18

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 373	6.5e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 375	1.5e-51	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	2 cut(s)	93, 167
AccBSI	CCGCTC	1 cut(s)	1080
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	3 cut(s)	959, 1078, 1093
AclWI	GGATC	2 cut(s)	327, 827
AcsI	RAATTY	3 cut(s)	856, 980, 1227
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	4 cut(s)	95, 181, 383, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	932, 1188
AgsI	TTSAA	4 cut(s)	260, 777, 905, 1232
AhdI	GACNNNNNGTC	1 cut(s)	204
AjiI	CACGTC	1 cut(s)	1207
AjnI	CCWGG	1 cut(s)	752
AloI	GAACNNNNNNTCC	4 cut(s)	112, 144, 226, 258
Alw21I	GWGCWC	1 cut(s)	1041
Alw26I	GTCTC	3 cut(s)	289, 401, 1101
AlwI	GGATC	2 cut(s)	327, 827
AlwNI	CAGNNNCTG	1 cut(s)	937
Ama87I	CYCGRG	2 cut(s)	302, 836
AoxI	GGCC	2 cut(s)	538, 582
ApeKI	GCWGC	3 cut(s)	140, 803, 1052
ApoI	RAATTY	3 cut(s)	856, 980, 1227
ArsI	GACNNNNNNTTYG	4 cut(s)	1079, 1111, 1160, 1192
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	206, 374
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	3 cut(s)	207, 416, 853
AvaI	CYCGRG	2 cut(s)	302, 836
AvaII	GGWCC	2 cut(s)	206, 374
BanI	GGYRCC	2 cut(s)	93, 167
BanII	GRGCYC	1 cut(s)	1041
BauI	CACGAG	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	1089
Bbv12I	GWGCWC	1 cut(s)	1041
BbvI	GCAGC	3 cut(s)	152, 815, 1064
BccI	CCATC	3 cut(s)	674, 781, 934
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	3 cut(s)	289, 401, 1101
BfaI	CTAG	2 cut(s)	830, 852
BfmI	CTRYAG	2 cut(s)	39, 323
BfoI	RGCGCY	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	5 cut(s)	141, 804, 960, 1053, 1078
BlsI	GCNGC	5 cut(s)	142, 805, 961, 1054, 1079
Bme1390I	CCNGG	2 cut(s)	707, 754
Bme18I	GGWCC	2 cut(s)	206, 374
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmeT110I	CYCGRG	2 cut(s)	302, 836
BmgBI	CACGTC	1 cut(s)	1207
BmgT120I	GGNCC	2 cut(s)	206, 374
BmiI	GGNNCC	5 cut(s)	95, 169, 244, 503, 817
BmrFI	CCNGG	2 cut(s)	707, 754
BmsI	GCATC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	1089
BplI	GAGNNNNNCTC	2 cut(s)	830, 862
BpuMI	CCSGG	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	932, 1188
Bse1I	ACTGG	2 cut(s)	14, 241
Bse3DI	GCAATG	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	2 cut(s)	742, 1178
BseLI	CCNNNNNNNGG	2 cut(s)	932, 1188
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	14, 241
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	152, 815, 1064
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	540, 584
BshNI	GGYRCC	2 cut(s)	93, 167
BsiHKAI	GWGCWC	1 cut(s)	1041
BsiHKCI	CYCGRG	2 cut(s)	302, 836
BsiSI	CCGG	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	932, 1188
BsmAI	GTCTC	3 cut(s)	289, 401, 1101
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	2 cut(s)	540, 584
BsoBI	CYCGRG	2 cut(s)	302, 836
Bsp1286I	GDGCHC	1 cut(s)	1041
Bsp1407I	TGTACA	3 cut(s)	179, 381, 1114
Bsp143I	GATC	3 cut(s)	24, 319, 832
BspACI	CCGC	3 cut(s)	959, 1078, 1093
BspANI	GGCC	2 cut(s)	540, 584
BspCNI	CTCAG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	5 cut(s)	95, 169, 244, 503, 817
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	327, 827
BspT107I	GGYRCC	2 cut(s)	93, 167
BsrBI	CCGCTC	1 cut(s)	1080
BsrDI	GCAATG	1 cut(s)	969
BsrGI	TGTACA	3 cut(s)	179, 381, 1114
BsrI	ACTGG	2 cut(s)	14, 241
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	3 cut(s)	24, 319, 832
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	2 cut(s)	412, 527
Bst6I	CTCTTC	1 cut(s)	777
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstAUI	TGTACA	3 cut(s)	179, 381, 1114
BstC8I	GCNNGC	3 cut(s)	11, 429, 957
BstDEI	CTNAG	2 cut(s)	390, 441
BstF5I	GGATG	2 cut(s)	742, 1178
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	27, 322, 835
BstMAI	GTCTC	3 cut(s)	289, 401, 1101
BstMBI	GATC	3 cut(s)	24, 319, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 758, 1058
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	705, 752
BstSFI	CTRYAG	2 cut(s)	39, 323
BstV1I	GCAGC	3 cut(s)	152, 815, 1064
BstV2I	GAAGAC	1 cut(s)	1089
BstX2I	RGATCY	2 cut(s)	319, 832
BstXI	CCANNNNNNTGG	1 cut(s)	621
BstYI	RGATCY	2 cut(s)	319, 832
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	540, 584
BtrI	CACGTC	1 cut(s)	1207
BtsCI	GGATG	2 cut(s)	742, 1178
Cac8I	GCNNGC	3 cut(s)	11, 429, 957
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	206, 374
Csp6I	GTAC	4 cut(s)	94, 180, 382, 1115
CviAII	CATG	7 cut(s)	565, 638, 677, 745, 800, 1102, 1163
CviQI	GTAC	4 cut(s)	94, 180, 382, 1115
DdeI	CTNAG	2 cut(s)	390, 441
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	3 cut(s)	26, 321, 834
DpnII	GATC	3 cut(s)	24, 319, 832
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	777
Eam1105I	GACNNNNNGTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	1041
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	206, 374
Eco53kI	GAGCTC	1 cut(s)	1039
Eco88I	CYCGRG	2 cut(s)	302, 836
EcoICRI	GAGCTC	1 cut(s)	1039
EcoRII	CCWGG	1 cut(s)	752
EcoRV	GATATC	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	1041
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	7 cut(s)	568, 641, 680, 748, 803, 1105, 1166
FatI	CATG	7 cut(s)	564, 637, 676, 744, 799, 1101, 1162
FauNDI	CATATG	2 cut(s)	546, 1282
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	141, 804, 960, 1053, 1078
FokI	GGATG	2 cut(s)	749, 1165
FriOI	GRGCYC	1 cut(s)	1041
Fsp4HI	GCNGC	5 cut(s)	141, 804, 960, 1053, 1078
FspBI	CTAG	2 cut(s)	830, 852
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	5 cut(s)	141, 804, 960, 1053, 1078
GsaI	CCCAGC	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	540, 584
HapII	CCGG	1 cut(s)	706
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	7 cut(s)	568, 641, 680, 748, 803, 1105, 1166
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	7 cut(s)	173, 194, 212, 437, 740, 1004, 1256
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	3 cut(s)	207, 416, 853
Hpy166II	GTNNAC	7 cut(s)	382, 399, 511, 562, 793, 880, 1210
Hpy188I	TCNGA	5 cut(s)	193, 229, 393, 465, 939
Hpy188III	TCNNGA	9 cut(s)	132, 209, 294, 508, 677, 777, 830, 836, 1128
Hpy8I	GTNNAC	7 cut(s)	382, 399, 511, 562, 793, 880, 1210
HpyAV	CCTTC	3 cut(s)	129, 254, 256
HpyCH4III	ACNGT	2 cut(s)	412, 527
HpyCH4IV	ACGT	1 cut(s)	1206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 758, 1058
HpyF3I	CTNAG	2 cut(s)	390, 441
HpySE526I	ACGT	1 cut(s)	1206
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	7 cut(s)	568, 641, 680, 748, 803, 1105, 1166
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	24, 319, 832
LmnI	GCTCC	3 cut(s)	683, 952, 1085
Lsp1109I	GCAGC	3 cut(s)	152, 815, 1064
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	2 cut(s)	830, 852
MaeII	ACGT	1 cut(s)	1206
MalI	GATC	3 cut(s)	26, 321, 834
MbiI	CCGCTC	1 cut(s)	1080
MboI	GATC	3 cut(s)	24, 319, 832
MboII	GAAGA	7 cut(s)	73, 140, 498, 665, 794, 930, 1089
MflI	RGATCY	2 cut(s)	319, 832
MhlI	GDGCHC	1 cut(s)	1041
MluCI	AATT	8 cut(s)	69, 183, 340, 516, 856, 980, 996, 1227
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	4 cut(s)	167, 188, 206, 1265
MmeI	TCCRAC	2 cut(s)	714, 744
MseI	TTAA	6 cut(s)	267, 398, 420, 474, 515, 1014
MslI	CAYNNNNRTG	2 cut(s)	594, 1066
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	707, 754
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	3 cut(s)	167, 758, 1058
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	707
NdeI	CATATG	2 cut(s)	546, 1282
NdeII	GATC	3 cut(s)	24, 319, 832
NlaIII	CATG	7 cut(s)	568, 641, 680, 748, 803, 1105, 1166
NlaIV	GGNNCC	5 cut(s)	95, 169, 244, 503, 817
NspI	RCATGY	1 cut(s)	803
PagI	TCATGA	1 cut(s)	676
PctI	GAATGC	1 cut(s)	1137
PfeI	GAWTC	3 cut(s)	437, 740, 1004
PkrI	GCNGC	5 cut(s)	142, 805, 961, 1054, 1079
PleI	GAGTC	4 cut(s)	167, 188, 206, 1264
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	4 cut(s)	167, 188, 206, 1264
Psp124BI	GAGCTC	1 cut(s)	1041
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	5 cut(s)	95, 169, 244, 503, 817
PspPI	GGNCC	2 cut(s)	206, 374
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	2 cut(s)	319, 832
RsaI	GTAC	4 cut(s)	95, 181, 383, 1116
RsaNI	GTAC	4 cut(s)	94, 180, 382, 1115
RseI	CAYNNNNRTG	2 cut(s)	594, 1066
SacI	GAGCTC	1 cut(s)	1041
SaqAI	TTAA	6 cut(s)	267, 398, 420, 474, 515, 1014
SatI	GCNGC	5 cut(s)	141, 804, 960, 1053, 1078
Sau3AI	GATC	3 cut(s)	24, 319, 832
Sau96I	GGNCC	2 cut(s)	206, 374
SchI	GAGTC	4 cut(s)	167, 188, 206, 1265
ScrFI	CCNGG	2 cut(s)	707, 754
SduI	GDGCHC	1 cut(s)	1041
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	2 cut(s)	39, 323
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	206, 374
SmiMI	CAYNNNNRTG	2 cut(s)	594, 1066
Sse9I	AATT	8 cut(s)	69, 183, 340, 516, 856, 980, 996, 1227
SsiI	CCGC	3 cut(s)	959, 1078, 1093
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	830, 852
SstI	GAGCTC	1 cut(s)	1041
StyD4I	CCNGG	2 cut(s)	705, 752
TaaI	ACNGT	2 cut(s)	412, 527
TaiI	ACGT	1 cut(s)	1209
TaqI	TCGA	2 cut(s)	133, 197
TasI	AATT	8 cut(s)	69, 183, 340, 516, 856, 980, 996, 1227
TatI	WGTACW	3 cut(s)	179, 381, 1114
TauI	GCSGC	2 cut(s)	962, 1080
TfiI	GAWTC	3 cut(s)	437, 740, 1004
Tru1I	TTAA	6 cut(s)	267, 398, 420, 474, 515, 1014
Tru9I	TTAA	6 cut(s)	267, 398, 420, 474, 515, 1014
TseI	GCWGC	3 cut(s)	140, 803, 1052
TspDTI	ATGAA	6 cut(s)	17, 615, 626, 665, 753, 980
TspGWI	ACGGA	2 cut(s)	247, 986
VpaK11BI	GGWCC	2 cut(s)	206, 374
XapI	RAATTY	3 cut(s)	856, 980, 1227
XbaI	TCTAGA	1 cut(s)	829
XceI	RCATGY	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1231
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	2 cut(s)	830, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.