Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014990.1

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3552

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014990.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1349 bp

gtttgccaaatggcttagataatttgaatagggaatactcaattgtaattgaggagatgaaaggcgagccagttggactgatcattggggtttctataggggtagtgattggagtgcttttggcaatttctgggttcttctgcgttaggtaccataggaagcgtatgcaaatagggaacagcagttctcgaagggcagcaaatcttcctattcgtgctaatggcgccgactcttgtacaattttgtcagactcgacacttggtccagactcacctgtcaaatctgaaaggactggtggttccttctggtttgttgaaggatttaagaggagtaatgtagtctcaatgtctggaatacccgagtattcttacaaggatctgcagaaggcaacctataattttacaacattgatagggcaaggtgcatttggtcctgtgtacaaagctcagatgttaacgggtgagactgttgccgttaaagtgcttgcaactgattctaagcaaggggagaaagagtttcagacagaggttaagttactgggaagattgcatcacaggaacctcgtgaacttaattggatactgtgcagaaaaaggccaacatatgcttatttatgtctacatgagtaaagggagtttggcctctcatttgtatgatgaaaagaatgagccattgagctgggatttgagggttcatatagctttagatgttgcaaggggcttggagtatcttcatgatggagcagttcctcctgtaatacaccgggatatcaaatccaacaatatcctgttggatgaatccatgagagccagggtagctgattttggactttcaagagaagagatggtggacaaacatgcagctattaggggaacctttggctatctagatcccgagtatatctctactagaaatttcaccaagaaaagtgatgtttacagctttggagttttgctgtttgaactcatagctggaagaaatcctcaacagggtctgatggaatatgtggagcttgcggcaatgaatacggaggggaaatttgggtgggaggaaattgtggattcccgtcttaatgggaactttgatgtgcaagagctcaacgaagtggcagctcttgcatataaatgtgtcagccgctccccaaaaaagcggtcttccatgagagacattgtacaagtgctatcacgaatgctgaaagtgaggcacaatagaaagcaccatgcgaaatcattgtcatccacagcagaggaagttatgattgacgtgaaccaaccagaaaccaaaattcaaatggctgaacatcaaagagacgagtctatggacagcacagccgatacgtatgatttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

448

Amino Acids

50.15

Weight (kDa)

6.73

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
Acc65I	GGTACC	1 cut(s)	149
AccB1I	GGYRCC	2 cut(s)	149, 223
AccBSI	CCGCTC	1 cut(s)	1136
AccI	GTMKAC	1 cut(s)	617
AciI	CCGC	3 cut(s)	1015, 1134, 1149
AclWI	GGATC	2 cut(s)	383, 883
AcsI	RAATTY	3 cut(s)	912, 1036, 1283
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	4 cut(s)	151, 237, 439, 1172
AfiI	CCNNNNNNNGG	1 cut(s)	988
AgsI	TTSAA	5 cut(s)	27, 316, 833, 961, 1288
AhdI	GACNNNNNGTC	1 cut(s)	260
AjiI	CACGTC	1 cut(s)	1263
AjnI	CCWGG	1 cut(s)	808
AloI	GAACNNNNNNTCC	4 cut(s)	168, 200, 282, 314
Alw21I	GWGCWC	1 cut(s)	1097
Alw26I	GTCTC	4 cut(s)	345, 457, 1157, 1301
AlwI	GGATC	2 cut(s)	383, 883
AlwNI	CAGNNNCTG	1 cut(s)	993
Ama87I	CYCGRG	2 cut(s)	358, 892
AoxI	GGCC	2 cut(s)	594, 638
ApeKI	GCWGC	3 cut(s)	196, 859, 1108
ApoI	RAATTY	3 cut(s)	912, 1036, 1283
ArsI	GACNNNNNNTTYG	4 cut(s)	1135, 1167, 1216, 1248
Asp718I	GGTACC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	262, 430
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	263, 472, 909
AvaI	CYCGRG	2 cut(s)	358, 892
AvaII	GGWCC	2 cut(s)	262, 430
BanI	GGYRCC	2 cut(s)	149, 223
BanII	GRGCYC	1 cut(s)	1097
BauI	CACGAG	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	1145
Bbv12I	GWGCWC	1 cut(s)	1097
BbvI	GCAGC	3 cut(s)	208, 871, 1120
BccI	CCATC	3 cut(s)	730, 837, 990
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	810
BciVI	GTATCC	1 cut(s)	571
BclI	TGATCA	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	4 cut(s)	345, 457, 1157, 1301
BfaI	CTAG	2 cut(s)	886, 908
BfmI	CTRYAG	2 cut(s)	95, 379
BfoI	RGCGCY	1 cut(s)	227
BfuI	GTATCC	1 cut(s)	571
BisI	GCNGC	5 cut(s)	197, 860, 1016, 1109, 1134
BlsI	GCNGC	5 cut(s)	198, 861, 1017, 1110, 1135
Bme1390I	CCNGG	2 cut(s)	763, 810
Bme18I	GGWCC	2 cut(s)	262, 430
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmeT110I	CYCGRG	2 cut(s)	358, 892
BmgBI	CACGTC	1 cut(s)	1263
BmgT120I	GGNCC	2 cut(s)	262, 430
BmiI	GGNNCC	5 cut(s)	151, 225, 300, 559, 873
BmrFI	CCNGG	2 cut(s)	763, 810
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	1145
BplI	GAGNNNNNCTC	2 cut(s)	886, 918
BpuMI	CCSGG	1 cut(s)	763
BsaAI	YACGTR	1 cut(s)	1337
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	809
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	988
Bse1I	ACTGG	3 cut(s)	70, 297, 542
Bse3DI	GCAATG	1 cut(s)	1025
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	1 cut(s)	809
BseGI	GGATG	2 cut(s)	798, 1234
BseLI	CCNNNNNNNGG	1 cut(s)	988
BseMI	GCAATG	1 cut(s)	1025
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	3 cut(s)	70, 297, 542
BseRI	GAGGAG	2 cut(s)	67, 342
BseXI	GCAGC	3 cut(s)	208, 871, 1120
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	596, 640
BshNI	GGYRCC	2 cut(s)	149, 223
BsiHKAI	GWGCWC	1 cut(s)	1097
BsiHKCI	CYCGRG	2 cut(s)	358, 892
BsiSI	CCGG	1 cut(s)	762
BslI	CCNNNNNNNGG	1 cut(s)	988
BsmAI	GTCTC	4 cut(s)	345, 457, 1157, 1301
BsmBI	CGTCTC	1 cut(s)	1301
BsmI	GAATGC	1 cut(s)	1193
BsnI	GGCC	2 cut(s)	596, 640
BsoBI	CYCGRG	2 cut(s)	358, 892
Bsp1286I	GDGCHC	1 cut(s)	1097
Bsp1407I	TGTACA	3 cut(s)	235, 437, 1170
Bsp143I	GATC	3 cut(s)	80, 375, 888
BspACI	CCGC	3 cut(s)	1015, 1134, 1149
BspANI	GGCC	2 cut(s)	596, 640
BspCNI	CTCAG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	5 cut(s)	151, 225, 300, 559, 873
BspMAI	CTGCAG	1 cut(s)	383
BspPI	GGATC	2 cut(s)	383, 883
BspT107I	GGYRCC	2 cut(s)	149, 223
BsrBI	CCGCTC	1 cut(s)	1136
BsrDI	GCAATG	1 cut(s)	1025
BsrGI	TGTACA	3 cut(s)	235, 437, 1170
BsrI	ACTGG	3 cut(s)	70, 297, 542
BssECI	CCNNGG	1 cut(s)	809
BssMI	GATC	3 cut(s)	80, 375, 888
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	468, 583
Bst6I	CTCTTC	1 cut(s)	833
BstACI	GRCGYC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	1114
BstAUI	TGTACA	3 cut(s)	235, 437, 1170
BstBAI	YACGTR	1 cut(s)	1337
BstC8I	GCNNGC	3 cut(s)	67, 485, 1013
BstDEI	CTNAG	3 cut(s)	15, 446, 497
BstF5I	GGATG	2 cut(s)	798, 1234
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	83, 378, 891
BstMAI	GTCTC	4 cut(s)	345, 457, 1157, 1301
BstMBI	GATC	3 cut(s)	80, 375, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 814, 1114
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	2 cut(s)	761, 808
BstSFI	CTRYAG	2 cut(s)	95, 379
BstSNI	TACGTA	1 cut(s)	1337
BstV1I	GCAGC	3 cut(s)	208, 871, 1120
BstV2I	GAAGAC	1 cut(s)	1145
BstX2I	RGATCY	2 cut(s)	375, 888
BstXI	CCANNNNNNTGG	1 cut(s)	677
BstYI	RGATCY	2 cut(s)	375, 888
BsuI	GTATCC	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	596, 640
BtrI	CACGTC	1 cut(s)	1263
BtsCI	GGATG	2 cut(s)	798, 1234
Cac8I	GCNNGC	3 cut(s)	67, 485, 1013
CaiI	CAGNNNCTG	1 cut(s)	993
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	262, 430
Csp6I	GTAC	4 cut(s)	150, 236, 438, 1171
CviAII	CATG	6 cut(s)	621, 733, 801, 856, 1158, 1219
CviQI	GTAC	4 cut(s)	150, 236, 438, 1171
DdeI	CTNAG	3 cut(s)	15, 446, 497
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	3 cut(s)	82, 377, 890
DpnII	GATC	3 cut(s)	80, 375, 888
DrdI	GACNNNNNNGTC	1 cut(s)	274
DriI	GACNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	833
Eam1105I	GACNNNNNGTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	833
Ecl136II	GAGCTC	1 cut(s)	1095
Eco105I	TACGTA	1 cut(s)	1337
Eco24I	GRGCYC	1 cut(s)	1097
Eco32I	GATATC	1 cut(s)	768
Eco47I	GGWCC	2 cut(s)	262, 430
Eco53kI	GAGCTC	1 cut(s)	1095
Eco88I	CYCGRG	2 cut(s)	358, 892
EcoICRI	GAGCTC	1 cut(s)	1095
EcoRII	CCWGG	1 cut(s)	808
EcoRV	GATATC	1 cut(s)	768
EcoT38I	GRGCYC	1 cut(s)	1097
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	1301
FaeI	CATG	6 cut(s)	624, 736, 804, 859, 1161, 1222
FatI	CATG	6 cut(s)	620, 732, 800, 855, 1157, 1218
FauNDI	CATATG	1 cut(s)	602
FbaI	TGATCA	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	5 cut(s)	197, 860, 1016, 1109, 1134
FokI	GGATG	2 cut(s)	805, 1221
FriOI	GRGCYC	1 cut(s)	1097
Fsp4HI	GCNGC	5 cut(s)	197, 860, 1016, 1109, 1134
FspBI	CTAG	2 cut(s)	886, 908
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	197, 860, 1016, 1109, 1134
GsaI	CCCAGC	1 cut(s)	681
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	596, 640
HapII	CCGG	1 cut(s)	762
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	6 cut(s)	624, 736, 804, 859, 1161, 1222
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	455
HindII	GTYRAC	1 cut(s)	455
HinfI	GANTC	7 cut(s)	229, 250, 268, 493, 796, 1060, 1312
HpaI	GTTAAC	1 cut(s)	455
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	3 cut(s)	263, 472, 909
Hpy166II	GTNNAC	7 cut(s)	438, 455, 567, 618, 849, 936, 1266
Hpy188I	TCNGA	5 cut(s)	249, 285, 449, 521, 995
Hpy188III	TCNNGA	9 cut(s)	188, 265, 350, 564, 733, 833, 886, 892, 1184
Hpy8I	GTNNAC	7 cut(s)	438, 455, 567, 618, 849, 936, 1266
HpyAV	CCTTC	4 cut(s)	185, 310, 312, 378
HpyCH4III	ACNGT	2 cut(s)	468, 583
HpyCH4IV	ACGT	2 cut(s)	1262, 1336
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 814, 1114
HpyF3I	CTNAG	3 cut(s)	15, 446, 497
HpySE526I	ACGT	2 cut(s)	1262, 1336
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	6 cut(s)	624, 736, 804, 859, 1161, 1222
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	153
Ksp22I	TGATCA	1 cut(s)	80
KspAI	GTTAAC	1 cut(s)	455
Kzo9I	GATC	3 cut(s)	80, 375, 888
LmnI	GCTCC	3 cut(s)	739, 1008, 1141
Lsp1109I	GCAGC	3 cut(s)	208, 871, 1120
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	2 cut(s)	886, 908
MaeII	ACGT	2 cut(s)	1262, 1336
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	82, 377, 890
MbiI	CCGCTC	1 cut(s)	1136
MboI	GATC	3 cut(s)	80, 375, 888
MboII	GAAGA	7 cut(s)	129, 196, 554, 721, 850, 986, 1145
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	2 cut(s)	375, 888
MhlI	GDGCHC	1 cut(s)	1097
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	4 cut(s)	223, 244, 262, 1321
MmeI	TCCRAC	3 cut(s)	54, 770, 800
MseI	TTAA	6 cut(s)	323, 454, 476, 530, 571, 1070
MslI	CAYNNNNRTG	2 cut(s)	650, 1122
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	763, 810
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	1193
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	3 cut(s)	223, 814, 1114
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	763
NdeI	CATATG	1 cut(s)	602
NdeII	GATC	3 cut(s)	80, 375, 888
NlaIII	CATG	6 cut(s)	624, 736, 804, 859, 1161, 1222
NlaIV	GGNNCC	5 cut(s)	151, 225, 300, 559, 873
NspI	RCATGY	1 cut(s)	859
PagI	TCATGA	1 cut(s)	732
PctI	GAATGC	1 cut(s)	1193
PfeI	GAWTC	3 cut(s)	493, 796, 1060
PkrI	GCNGC	5 cut(s)	198, 861, 1017, 1110, 1135
PleI	GAGTC	4 cut(s)	223, 244, 262, 1320
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	4 cut(s)	223, 244, 262, 1320
Ppu21I	YACGTR	1 cut(s)	1337
Psp124BI	GAGCTC	1 cut(s)	1097
Psp6I	CCWGG	1 cut(s)	808
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	5 cut(s)	151, 225, 300, 559, 873
PspPI	GGNCC	2 cut(s)	262, 430
PstI	CTGCAG	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	993
PsuI	RGATCY	2 cut(s)	375, 888
RsaI	GTAC	4 cut(s)	151, 237, 439, 1172
RsaNI	GTAC	4 cut(s)	150, 236, 438, 1171
RseI	CAYNNNNRTG	2 cut(s)	650, 1122
SacI	GAGCTC	1 cut(s)	1097
SaqAI	TTAA	6 cut(s)	323, 454, 476, 530, 571, 1070
SatI	GCNGC	5 cut(s)	197, 860, 1016, 1109, 1134
Sau3AI	GATC	3 cut(s)	80, 375, 888
Sau96I	GGNCC	2 cut(s)	262, 430
SchI	GAGTC	4 cut(s)	223, 244, 262, 1321
ScrFI	CCNGG	2 cut(s)	763, 810
SduI	GDGCHC	1 cut(s)	1097
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	95, 379
SfoI	GGCGCC	1 cut(s)	225
SinI	GGWCC	2 cut(s)	262, 430
SmiMI	CAYNNNNRTG	2 cut(s)	650, 1122
SnaBI	TACGTA	1 cut(s)	1337
SsiI	CCGC	3 cut(s)	1015, 1134, 1149
SspDI	GGCGCC	1 cut(s)	223
SspMI	CTAG	2 cut(s)	886, 908
SstI	GAGCTC	1 cut(s)	1097
StyD4I	CCNGG	2 cut(s)	761, 808
TaaI	ACNGT	2 cut(s)	468, 583
TaiI	ACGT	2 cut(s)	1265, 1339
TaqI	TCGA	2 cut(s)	189, 253
TatI	WGTACW	3 cut(s)	235, 437, 1170
TauI	GCSGC	2 cut(s)	1018, 1136
TfiI	GAWTC	3 cut(s)	493, 796, 1060
Tru1I	TTAA	6 cut(s)	323, 454, 476, 530, 571, 1070
Tru9I	TTAA	6 cut(s)	323, 454, 476, 530, 571, 1070
TseI	GCWGC	3 cut(s)	196, 859, 1108
TspDTI	ATGAA	6 cut(s)	73, 671, 682, 721, 809, 1036
TspGWI	ACGGA	1 cut(s)	1042
VpaK11BI	GGWCC	2 cut(s)	262, 430
XapI	RAATTY	3 cut(s)	912, 1036, 1283
XbaI	TCTAGA	1 cut(s)	885
XceI	RCATGY	1 cut(s)	859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1287
XmiI	GTMKAC	1 cut(s)	617
XspI	CTAG	2 cut(s)	886, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.