Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

32342462 .. 32348514

Gene Structure 6053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAAGGCGAGCCAGTTGGACTGATCATTGGGGTTTCTATAGGGGTAGTGATTGGAGTGCTTTTGGCAATTTCTGGGTTCTTCTGCATTAGGTACCATAGGAAGCGTATGCAAATAGGGAACAGCAGTTCTCGAAGGGCAGCAAATCTTCCTATTCGTGCTAATGGCGCCGACTCTTGTACAATTTTGTCAGACTCGACACTTGGTCCAGACTCACCTGTCAAATCTGAACGGACTGGTGGTTCCTTCTGGCTTGTTGAAGGATTTAAGAGGAGTAATGTAGTCTCAATGTCTGGAATACCCGAGTATTCTTACAAGGATCTGCAGAAAGCAACCTATAATTTTACAACATTGATAGGGCAAGGTGCATTTGGTCCTGTGTACAAAGCTCAGATGTTAACGGGTGAGACTGTTGCCGTTAAAGTGCTTGCAACTGATTCTAAGCAAGGGGAGAAAGAGTTTCAGACAGAGGTTAAGTTACTGGGAAGATTGCATCACAGGAACCTCGTGAACTTAATTGGATACTGTGCAGAAAAAGGCCAACATATGCTTATTTATGTCTACATGAGTAAAGGGAGTTTGGCCTCTCATTTGTATGATGAAAAGAATGAGCCATTGAGCTGGGATTTGAGGGTTCATGTAGCTTTAGATGTTGCAAGGGGCTTGGAGTATCTTCATGATGGAGCAGTTCCTCCTGTAATACACCGGGATATCAAATCCAACAATATCCTGTTGGATGAATCCATGAGAGCCAGGGTATGGCCCTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

257

Amino Acids

28.4

Weight (kDa)

9.1

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 250	8.8e-28	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 253	8.2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	2 cut(s)	93, 167
AccB7I	CCANNNNNTGG	1 cut(s)	759
AccI	GTMKAC	1 cut(s)	561
AclWI	GGATC	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	3 cut(s)	95, 181, 383
AfiI	CCNNNNNNNGG	1 cut(s)	759
AgsI	TTSAA	1 cut(s)	260
AhdI	GACNNNNNGTC	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	752
AloI	GAACNNNNNNTCC	4 cut(s)	112, 144, 226, 258
AluBI	AGCT	3 cut(s)	389, 621, 644
AluI	AGCT	3 cut(s)	389, 621, 644
Alw26I	GTCTC	2 cut(s)	289, 401
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	538, 582, 761
ApeKI	GCWGC	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	206, 374, 762
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	207, 416
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	206, 374
BanI	GGYRCC	2 cut(s)	93, 167
BauI	CACGAG	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	2 cut(s)	289, 401
BfmI	CTRYAG	2 cut(s)	39, 323
BfoI	RGCGCY	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	515
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	707, 754
Bme18I	GGWCC	2 cut(s)	206, 374
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	206, 374, 762
BmiI	GGNNCC	4 cut(s)	95, 169, 244, 503
BmrFI	CCNGG	2 cut(s)	707, 754
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	753
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	759
Bse1I	ACTGG	3 cut(s)	14, 241, 486
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	759
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	3 cut(s)	14, 241, 486
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	621
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	540, 584, 763
BshNI	GGYRCC	2 cut(s)	93, 167
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	706
BslI	CCNNNNNNNGG	1 cut(s)	759
BsmAI	GTCTC	2 cut(s)	289, 401
BsnI	GGCC	3 cut(s)	540, 584, 763
BsoBI	CYCGRG	1 cut(s)	302
Bsp1407I	TGTACA	2 cut(s)	179, 381
Bsp143I	GATC	2 cut(s)	24, 319
BspANI	GGCC	3 cut(s)	540, 584, 763
BspCNI	CTCAG	1 cut(s)	403
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	95, 169, 244, 503
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	2 cut(s)	93, 167
BsrGI	TGTACA	2 cut(s)	179, 381
BsrI	ACTGG	3 cut(s)	14, 241, 486
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	2 cut(s)	24, 319
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	2 cut(s)	412, 527
BstACI	GRCGYC	1 cut(s)	168
BstAUI	TGTACA	2 cut(s)	179, 381
BstC8I	GCNNGC	2 cut(s)	11, 429
BstDEI	CTNAG	2 cut(s)	390, 441
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	27, 322
BstMAI	GTCTC	2 cut(s)	289, 401
BstMBI	GATC	2 cut(s)	24, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	754
BstSCI	CCNGG	2 cut(s)	705, 752
BstSFI	CTRYAG	2 cut(s)	39, 323
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	3 cut(s)	540, 584, 763
BtsCI	GGATG	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	11, 429
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	206, 374, 762
Csp6I	GTAC	3 cut(s)	94, 180, 382
CviAII	CATG	4 cut(s)	565, 638, 677, 745
CviQI	GTAC	3 cut(s)	94, 180, 382
DdeI	CTNAG	2 cut(s)	390, 441
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	26, 321
DpnII	GATC	2 cut(s)	24, 319
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1105I	GACNNNNNGTC	1 cut(s)	204
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	206, 374
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	752
EcoRV	GATATC	1 cut(s)	712
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	4 cut(s)	568, 641, 680, 748
FatI	CATG	4 cut(s)	564, 637, 676, 744
FauNDI	CATATG	1 cut(s)	546
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	1 cut(s)	141
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	625
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	3 cut(s)	540, 584, 763
HapII	CCGG	1 cut(s)	706
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	568, 641, 680, 748
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	5 cut(s)	173, 194, 212, 437, 740
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	2 cut(s)	207, 416
Hpy166II	GTNNAC	4 cut(s)	382, 399, 511, 562
Hpy188I	TCNGA	4 cut(s)	193, 229, 393, 465
Hpy188III	TCNNGA	5 cut(s)	132, 209, 294, 508, 677
Hpy8I	GTNNAC	4 cut(s)	382, 399, 511, 562
HpyAV	CCTTC	3 cut(s)	129, 254, 256
HpyCH4III	ACNGT	2 cut(s)	412, 527
HpyCH4V	TGCA	8 cut(s)	87, 112, 325, 368, 431, 493, 530, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	390, 441
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	568, 641, 680, 748
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	24, 319
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	2 cut(s)	26, 321
MboI	GATC	2 cut(s)	24, 319
MboII	GAAGA	4 cut(s)	73, 140, 498, 665
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	4 cut(s)	69, 183, 340, 516
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	167, 188, 206
MmeI	TCCRAC	2 cut(s)	714, 744
MnlI	CCTC	6 cut(s)	264, 463, 515, 595, 624, 702
MseI	TTAA	5 cut(s)	267, 398, 420, 474, 515
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	707, 754
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	707
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	2 cut(s)	24, 319
NlaIII	CATG	4 cut(s)	568, 641, 680, 748
NlaIV	GGNNCC	4 cut(s)	95, 169, 244, 503
PagI	TCATGA	1 cut(s)	676
PfeI	GAWTC	2 cut(s)	437, 740
PflMI	CCANNNNNTGG	1 cut(s)	759
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	3 cut(s)	167, 188, 206
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	167, 188, 206
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	95, 169, 244, 503
PspPI	GGNCC	3 cut(s)	206, 374, 762
PstI	CTGCAG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	3 cut(s)	95, 181, 383
RsaNI	GTAC	3 cut(s)	94, 180, 382
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	5 cut(s)	267, 398, 420, 474, 515
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	24, 319
Sau96I	GGNCC	3 cut(s)	206, 374, 762
SchI	GAGTC	3 cut(s)	167, 188, 206
ScrFI	CCNGG	2 cut(s)	707, 754
SetI	ASST	9 cut(s)	95, 220, 338, 367, 391, 474, 507, 623, 646
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	2 cut(s)	39, 323
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	206, 374
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	4 cut(s)	69, 183, 340, 516
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	705, 752
TaaI	ACNGT	2 cut(s)	412, 527
TaqI	TCGA	2 cut(s)	133, 197
TasI	AATT	4 cut(s)	69, 183, 340, 516
TatI	WGTACW	2 cut(s)	179, 381
TfiI	GAWTC	2 cut(s)	437, 740
Tru1I	TTAA	5 cut(s)	267, 398, 420, 474, 515
Tru9I	TTAA	5 cut(s)	267, 398, 420, 474, 515
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	17, 615, 626, 665, 753
TspGWI	ACGGA	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	206, 374
XmiI	GTMKAC	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.