FvH4_3g02990

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
1585474 .. 1588821
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02990.t1

Sequence Viewer

Length: 1230 bp
ATGGAAGGGTTGGAAGTTGCATGGGGAATACTGATAGGCTCCGTTATTGGGTTCTTACTGGCAGCGACCCTAGTGATCGGAGCTCTCGTCTGCCGCAAATACCGAGCAAAGCTCCGTACGGGAACGAGTGTGTCCGCGTCACAGAGGATCACAGCGGCCAGCGCAGCCGAGTCGGACTCCAACCTCGGCCGAGACTCGCCGCGAAGTTCGGAGTGGAGCAACATGTCCATGTGGCTCGAGGCCCTCAAGAAAAAGAACGTCGTCTCCGCTTGTGGCATACCCAAGTATTCGTACGGAGACATCAAGAAAGCGACGTGTGACTTCACGACGGCTATTGGGCATGGGGCGTTTGGGCCTGTCTACAAGGCCCAAATGAGCACCGGCGAGACTTTTGCTGTGAAAGTTCTTGCTTCTGATTCCAGGCAAGGCCAGCATGAGTTTTTGGCTGAGGTTTTGTTACTTGCAAGACTACACCACAACAACCTTGTGAGCCTGATGGGATATACTGCAGAAATGGACCAGCTTATGCTTCTTTATAACTACATGAGCAGTGGCAGTCTTGATTCACATTTACATGCTGATAATCAGGTGCCATTGAGCTGGGATTTGAGGGTTGCAATAGCTCTTGATGTTGCAAGGGGATTGGAATACCTACATTATGGGGCTGTTCCTCCTGTTGTGCACCGCGACATCAAGTCTTCCAACATACTGTTGGACCAGTCAATGAAAGCTAAGATTGCTGATTTCGGGCTTTCAAGACAAGATAAGATGAAATCACGTTCCTCTGGTATCAGGGGAACCTTGGGATATGTTGATCCTGAGTATGTGGTAACAAGAATCTTTACCAAGAAATGTGATGTTTATAGTTTTGGTGTGCTGCTGTTTGAACTAATTACAGGCAGGAATCCACAGCAAGGTCTCATGGAATATGTGGAATTTGCTACAATGGATGCGGCAGATTCACTTGCATGGGAAGAGATTGTGGATCTTCGTCTTAATGGAGAATTTGATGTACAAGAACTAGCTCAGGTTGCTGATCTTGCTTACAAATGTGTTGGTAATGTCTCCAGAAAACGGCCTTCTATGAGGGACATAGTGCAGACATTATCAGTCATTTTGATGAAGAGACGTAGCGCAAAGAAACACCAGCATACTCCAACTGCAGCAGCTGAAGAAACTTACATTGAAATTGAGCTGATAGAGAAACAGGATCATTTAATTGAACGCTGA

Protein Analysis

410

Amino Acids

45.33

Weight (kDa)

6.84

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 108 - 369 1.3e-48 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 110 - 367 9.4e-48 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 589
AccI GTMKAC 1 cut(s) 360
AccII CGCG 3 cut(s) 137, 202, 687
AciI CCGC 7 cut(s) 94, 135, 155, 200, 267, 685, 953
AclWI GGATC 4 cut(s) 155, 809, 993, 1218
AcoI YGGCCR 2 cut(s) 156, 187
AcsI RAATTY 2 cut(s) 935, 1004
AcuI CTGAAG 1 cut(s) 1191
AfaI GTAC 3 cut(s) 118, 293, 1014
AfiI CCNNNNNNNGG 3 cut(s) 48, 914, 1074
AflIII ACRYGT 2 cut(s) 222, 314
AgsI TTSAA 4 cut(s) 756, 887, 1187, 1223
AhdI GACNNNNNGTC 1 cut(s) 694
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 1 cut(s) 419
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 9 cut(s) 83, 112, 523, 600, 623, 731, 1025, 1169, 1195
AluI AGCT 9 cut(s) 83, 112, 523, 600, 623, 731, 1025, 1169, 1195
Alw21I GWGCWC 3 cut(s) 85, 380, 684
Alw26I GTCTC 7 cut(s) 186, 268, 291, 380, 923, 1069, 1120
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 4 cut(s) 155, 809, 993, 1218
AlwNI CAGNNNCTG 1 cut(s) 1169
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 7 cut(s) 156, 187, 240, 353, 366, 427, 1076
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 5 cut(s) 62, 164, 877, 1163, 1166
ApoI RAATTY 2 cut(s) 935, 1004
AspLEI GCGC 2 cut(s) 164, 1136
AspS9I GGNCC 5 cut(s) 241, 353, 367, 517, 715
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 517, 715
BaeGI GKGCMC 1 cut(s) 684
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 3 cut(s) 85, 380, 684
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 5 cut(s) 74, 176, 864, 1175, 1178
BccI CCATC 1 cut(s) 490
BceAI ACGGC 2 cut(s) 345, 1091
BcgI CGANNNNNNTGC 4 cut(s) 153, 187, 374, 408
BciT130I CCWGG 1 cut(s) 421
BcoDI GTCTC 7 cut(s) 186, 268, 291, 380, 923, 1069, 1120
BfaI CTAG 2 cut(s) 71, 1022
BfmI CTRYAG 2 cut(s) 507, 1161
BisI GCNGC 9 cut(s) 63, 94, 156, 165, 200, 878, 954, 1164, 1167
BlsI GCNGC 9 cut(s) 64, 95, 157, 166, 201, 879, 955, 1165, 1168
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 2 cut(s) 517, 715
BmeRI GACNNNNNGTC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 5 cut(s) 241, 353, 367, 517, 715
BmiI GGNNCC 3 cut(s) 40, 591, 799
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 940
BpiI GAAGAC 1 cut(s) 690
BplI GAGNNNNNCTC 4 cut(s) 96, 128, 161, 193
BpmI CTGGAG 1 cut(s) 1051
Bpu10I CCTNAGC 2 cut(s) 447, 1026
BpuEI CTTGAG 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 2 cut(s) 184, 801
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 248, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 914, 1074
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 63, 718
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 2 cut(s) 184, 801
BseGI GGATG 1 cut(s) 955
BseLI CCNNNNNNNGG 3 cut(s) 48, 914, 1074
BseMII CTCAG 3 cut(s) 438, 810, 1040
BseNI ACTGG 2 cut(s) 63, 718
BseSI GKGCMC 1 cut(s) 684
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 5 cut(s) 74, 176, 864, 1175, 1178
BseYI CCCAGC 1 cut(s) 600
BsgI GTGCAG 1 cut(s) 1118
Bsh1236I CGCG 3 cut(s) 137, 202, 687
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 7 cut(s) 158, 189, 242, 355, 368, 429, 1078
BshNI GGYRCC 1 cut(s) 589
BsiEI CGRYCG 1 cut(s) 190
BsiHKAI GWGCWC 3 cut(s) 85, 380, 684
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 381
BsiWI CGTACG 2 cut(s) 116, 291
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 3 cut(s) 48, 914, 1074
BsmAI GTCTC 7 cut(s) 186, 268, 291, 380, 923, 1069, 1120
BsmBI CGTCTC 2 cut(s) 268, 1120
BsmFI GGGAC 1 cut(s) 1103
BsnI GGCC 7 cut(s) 158, 189, 242, 355, 368, 429, 1078
Bso31I GGTCTC 1 cut(s) 923
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 85, 380, 684
Bsp1407I TGTACA 1 cut(s) 1012
Bsp143I GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
BspACI CCGC 7 cut(s) 94, 135, 155, 200, 267, 685, 953
BspANI GGCC 7 cut(s) 158, 189, 242, 355, 368, 429, 1078
BspCNI CTCAG 3 cut(s) 439, 811, 1039
BspFNI CGCG 3 cut(s) 137, 202, 687
BspLI GGNNCC 3 cut(s) 40, 591, 799
BspMAI CTGCAG 2 cut(s) 511, 1165
BspPI GGATC 4 cut(s) 155, 809, 993, 1218
BspT107I GGYRCC 1 cut(s) 589
BspTNI GGTCTC 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 1012
BsrI ACTGG 2 cut(s) 63, 718
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 184, 801
BssMI GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 711
Bst6I CTCTTC 2 cut(s) 969, 1118
BstAUI TGTACA 1 cut(s) 1012
BstC8I GCNNGC 2 cut(s) 160, 431
BstDEI CTNAG 4 cut(s) 447, 732, 819, 1026
BstF5I GGATG 1 cut(s) 955
BstFNI CGCG 3 cut(s) 137, 202, 687
BstHHI GCGC 2 cut(s) 164, 1136
BstKTI GATC 6 cut(s) 78, 150, 817, 988, 1039, 1213
BstMAI GTCTC 7 cut(s) 186, 268, 291, 380, 923, 1069, 1120
BstMBI GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 6 cut(s) 161, 164, 430, 737, 1031, 1040
BstNI CCWGG 1 cut(s) 421
BstNSI RCATGY 2 cut(s) 226, 578
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 2 cut(s) 507, 1161
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 3 cut(s) 137, 202, 687
BstV1I GCAGC 5 cut(s) 74, 176, 864, 1175, 1178
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 985
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 1 cut(s) 985
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 7 cut(s) 158, 189, 242, 355, 368, 429, 1078
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 955
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 160, 431
CaiI CAGNNNCTG 1 cut(s) 1169
CfoI GCGC 2 cut(s) 164, 1136
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 5 cut(s) 241, 353, 367, 517, 715
CseI GACGC 1 cut(s) 126
Csp6I GTAC 3 cut(s) 117, 292, 1013
CviAII CATG 9 cut(s) 21, 223, 229, 341, 434, 544, 575, 922, 969
CviQI GTAC 3 cut(s) 117, 292, 1013
DdeI CTNAG 4 cut(s) 447, 732, 819, 1026
DpnI GATC 6 cut(s) 77, 149, 816, 987, 1038, 1212
DpnII GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
DriI GACNNNNNGTC 1 cut(s) 694
EaeI YGGCCR 2 cut(s) 156, 187
EagI CGGCCG 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 969, 1118
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 2 cut(s) 969, 1118
Ecl136II GAGCTC 1 cut(s) 83
EclXI CGGCCG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 923
Eco47I GGWCC 2 cut(s) 517, 715
Eco52I CGGCCG 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 1191
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 801
Esp3I CGTCTC 2 cut(s) 268, 1120
FaeI CATG 9 cut(s) 24, 226, 232, 344, 437, 547, 578, 925, 972
FaqI GGGAC 1 cut(s) 1103
FatI CATG 9 cut(s) 20, 222, 228, 340, 433, 543, 574, 921, 968
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 9 cut(s) 63, 94, 156, 165, 200, 878, 954, 1164, 1167
FokI GGATG 1 cut(s) 962
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 9 cut(s) 63, 94, 156, 165, 200, 878, 954, 1164, 1167
FspBI CTAG 2 cut(s) 71, 1022
GlaI GCGC 2 cut(s) 163, 1135
GluI GCNGC 9 cut(s) 63, 94, 156, 165, 200, 878, 954, 1164, 1167
GsaI CCCAGC 1 cut(s) 604
GsuI CTGGAG 1 cut(s) 1051
HaeIII GGCC 7 cut(s) 158, 189, 242, 355, 368, 429, 1078
HapII CCGG 1 cut(s) 381
HgaI GACGC 1 cut(s) 126
HhaI GCGC 2 cut(s) 164, 1136
Hin1II CATG 9 cut(s) 24, 226, 232, 344, 437, 547, 578, 925, 972
Hin6I GCGC 2 cut(s) 162, 1134
HinP1I GCGC 2 cut(s) 162, 1134
HinfI GANTC 8 cut(s) 170, 176, 194, 416, 563, 837, 904, 959
HpaII CCGG 1 cut(s) 381
Hpy166II GTNNAC 2 cut(s) 361, 682
Hpy188I TCNGA 4 cut(s) 80, 175, 211, 415
Hpy188III TCNNGA 8 cut(s) 247, 304, 325, 560, 626, 756, 818, 1068
Hpy8I GTNNAC 2 cut(s) 361, 682
Hpy99I CGWCG 3 cut(s) 263, 316, 331
HpyAV CCTTC 1 cut(s) 1089
HpyCH4III ACNGT 1 cut(s) 711
HpyCH4IV ACGT 4 cut(s) 258, 314, 778, 1129
HpyCH4V TGCA 9 cut(s) 20, 464, 509, 617, 635, 682, 968, 1099, 1163
HpyF10VI GCNNNNNNNGC 6 cut(s) 161, 164, 430, 737, 1031, 1040
HpyF3I CTNAG 4 cut(s) 447, 732, 819, 1026
HpySE526I ACGT 4 cut(s) 258, 314, 778, 1129
Hsp92II CATG 9 cut(s) 24, 226, 232, 344, 437, 547, 578, 925, 972
HspAI GCGC 2 cut(s) 162, 1134
Kzo9I GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
LmnI GCTCC 4 cut(s) 44, 80, 117, 216
Lsp1109I GCAGC 5 cut(s) 74, 176, 864, 1175, 1178
LweI GCATC 1 cut(s) 940
MaeI CTAG 2 cut(s) 71, 1022
MaeII ACGT 4 cut(s) 258, 314, 778, 1129
MaeIII GTNAC 4 cut(s) 138, 317, 456, 829
MalI GATC 6 cut(s) 77, 149, 816, 987, 1038, 1212
MboI GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
MboII GAAGA 5 cut(s) 690, 980, 986, 1135, 1184
MflI RGATCY 1 cut(s) 985
MhlI GDGCHC 3 cut(s) 85, 380, 684
MluCI AATT 5 cut(s) 891, 935, 1004, 1188, 1218
MlyI GAGTC 3 cut(s) 170, 179, 188
MmeI TCCRAC 5 cut(s) 153, 204, 693, 726, 1181
MnlI CCTC 9 cut(s) 138, 194, 232, 254, 442, 603, 681, 793, 1080
MseI TTAA 2 cut(s) 996, 1217
MslI CAYNNNNRTG 4 cut(s) 227, 573, 967, 1118
MspA1I CMGCKG 2 cut(s) 155, 1169
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 3 cut(s) 137, 202, 687
MwoI GCNNNNNNNGC 6 cut(s) 161, 164, 430, 737, 1031, 1040
NdeII GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
NlaIII CATG 9 cut(s) 24, 226, 232, 344, 437, 547, 578, 925, 972
NlaIV GGNNCC 3 cut(s) 40, 591, 799
NmeAIII GCCGAG 3 cut(s) 165, 193, 215
NmuCI GTSAC 2 cut(s) 138, 317
NspI RCATGY 2 cut(s) 226, 578
PaeR7I CTCGAG 1 cut(s) 236
PciI ACATGT 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 5 cut(s) 416, 563, 837, 904, 959
Pfl23II CGTACG 2 cut(s) 116, 291
PkrI GCNGC 9 cut(s) 64, 95, 157, 166, 201, 879, 955, 1165, 1168
PleI GAGTC 3 cut(s) 170, 178, 188
PpsI GAGTC 3 cut(s) 170, 178, 188
PscI ACATGT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 1 cut(s) 419
PspLI CGTACG 2 cut(s) 116, 291
PspN4I GGNNCC 3 cut(s) 40, 591, 799
PspPI GGNCC 5 cut(s) 241, 353, 367, 517, 715
PspXI VCTCGAGB 1 cut(s) 236
PstI CTGCAG 2 cut(s) 511, 1165
PstNI CAGNNNCTG 1 cut(s) 1169
PsuI RGATCY 1 cut(s) 985
PvuII CAGCTG 1 cut(s) 1169
RsaI GTAC 3 cut(s) 118, 293, 1014
RsaNI GTAC 3 cut(s) 117, 292, 1013
RseI CAYNNNNRTG 4 cut(s) 227, 573, 967, 1118
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 996, 1217
SatI GCNGC 9 cut(s) 63, 94, 156, 165, 200, 878, 954, 1164, 1167
Sau3AI GATC 6 cut(s) 75, 147, 814, 985, 1036, 1210
Sau96I GGNCC 5 cut(s) 241, 353, 367, 517, 715
SchI GAGTC 3 cut(s) 170, 179, 188
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 3 cut(s) 85, 380, 684
SfaNI GCATC 1 cut(s) 940
SfcI CTRYAG 2 cut(s) 507, 1161
Sfr274I CTCGAG 1 cut(s) 236
SgrAI CRCCGGYG 1 cut(s) 380
SinI GGWCC 2 cut(s) 517, 715
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 4 cut(s) 227, 573, 967, 1118
SmlI CTYRAG 2 cut(s) 236, 245
SmoI CTYRAG 2 cut(s) 236, 245
Sse9I AATT 5 cut(s) 891, 935, 1004, 1188, 1218
SsiI CCGC 7 cut(s) 94, 135, 155, 200, 267, 685, 953
SspMI CTAG 2 cut(s) 71, 1022
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 1 cut(s) 711
TaiI ACGT 4 cut(s) 261, 317, 781, 1132
TaqI TCGA 1 cut(s) 237
TasI AATT 5 cut(s) 891, 935, 1004, 1188, 1218
TatI WGTACW 1 cut(s) 1012
TauI GCSGC 4 cut(s) 96, 158, 202, 956
TfiI GAWTC 5 cut(s) 416, 563, 837, 904, 959
Tru1I TTAA 2 cut(s) 996, 1217
Tru9I TTAA 2 cut(s) 996, 1217
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 2 cut(s) 138, 317
TseI GCWGC 5 cut(s) 62, 164, 877, 1163, 1166
Tsp45I GTSAC 2 cut(s) 138, 317
TspDTI ATGAA 3 cut(s) 740, 785, 1136
TspGWI ACGGA 3 cut(s) 31, 104, 309
TspRI CASTG 1 cut(s) 556
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 517, 715
XapI RAATTY 2 cut(s) 935, 1004
XceI RCATGY 2 cut(s) 226, 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 71, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.