Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Reverse (-)

57473881 .. 57475224

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGTCTACACCCCAAAACCTCCCCTGCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCACCGCACCACAGCCTCATCACCGCCGCCTCTCTTCCCCAAACAAGCCCTCCCCACAAGGTCAGGCTACCTCCCAGTCAACCCCACCACAAACTCTGCCATATACTACACTTTCTATGAAGCTCAAACCCCAATCTCACCTCTCTCACAAACTCCACTCCTCATTTGGCTCCAGGGCGGCCCCGGCTGCTCCTCCATGATCGGCAACTTCTTCGAGCTCGGTCCCTGGCGCGTCAACTTCCACAAGCAACCCTCCGAGCCCCTTGCCTTGGAGCCCAACTCTGGTTCTTGGAACCGCATTTTCGGCTTGGTTTTTCTTGACAATCCTATAGGCACCGGATTCAGCATCGCTGCGAAGCCCGAAGAGATACCAACTGATCAGTTTGGAGTTGCAAAGCACTTGTTCGCTGCGATCACCAAGTTTGTTGAGCTTGATCCAGCTTTTAAGTCGAGGCGTATTTACATTACTGGGGAGAGCTATGCAGGGAAGTATGTTCCGGCTATTGGTTACTACATTTTGAAGAGGAATGCCGAGTTAAGTGAGTCTAAGCGTGTGAATTTGGGCGGTGTTGCTATCGGAGATGGGCTAACAGACCCGGTGATTCAGGTGGCTACTCATGCTGCGAATACTTACTTCTCTGGTTTGATCAATGAGAGGCAGAAGAGTGAGCTGGAGGAGCTTCAAGTTGCGGCGGTGAGGTTGATTAAGGCGAGGAATTGGAGTGAGGCAACGAATGGCCGAAACAGAGTTTTGAGGAGGTTGCAAAATATGACAGGGCTGGCTACTTTGTATGACTACACAAAGAATGCCGACTACGAAACCAGTTTGGTTGGGGAGTTGTTGAGCCATAAGGAGGTGAAGAAGGCGTTGGGGGTGTCGAATGTGTCCATTGTTTTTGAGGAGTGTAGTGATTTAGTGGGAGATGTGTTGCACGCGGATGTGATGAAGAGTGTGAAATACATGGTGGAGTTTCTTGTGAAGAACAGCAAGGTGTTGCTGTATCAAGGGCAGTATGATCTGCGAGACGGTGTGTTTTCCACCGAGGCTTGGGTCAAGACCATGAAATGGGAAGGGATACAGAAGTTTCTGTCGGCAGATCGGAATGTGTGGAAGTTGGGTGGAGAAACTGCTGGTTATGTTCAGAAATGGGGGAGTTTGAGCCAAGTTGCGGTTTCAGGTGCTGGTCATCTTTTGCCAACTGACCAGCCATTGAGAGCTCAAGCAATGATTGAAGACTGGGTTTTGGATAAAGGGTTGTTTGCCAATGTTCAAGAGGCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

447

Amino Acids

49.79

Weight (kDa)

7.06

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	36 - 434	3.4e-98	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	1125
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	2 cut(s)	291, 995
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	1 cut(s)	616
AfiI	CCNNNNNNNGG	7 cut(s)	328, 341, 563, 913, 1107, 1125, 1228
AgsI	TTSAA	4 cut(s)	580, 743, 1292, 1331
AjnI	CCWGG	2 cut(s)	231, 284
AjuI	GAANNNNNNNTTGG	2 cut(s)	911, 943
AluBI	AGCT	8 cut(s)	182, 277, 490, 500, 537, 730, 739, 1277
AluI	AGCT	8 cut(s)	182, 277, 490, 500, 537, 730, 739, 1277
Alw21I	GWGCWC	2 cut(s)	279, 1279
Alw26I	GTCTC	1 cut(s)	1077
AlwI	GGATC	1 cut(s)	488
AlwNI	CAGNNNCTG	1 cut(s)	1241
AoxI	GGCC	2 cut(s)	238, 796
ApeKI	GCWGC	4 cut(s)	246, 410, 467, 680
ApoI	RAATTY	1 cut(s)	616
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	239, 281
AsuC2I	CCSGG	2 cut(s)	243, 656
AsuHPI	GGTGA	6 cut(s)	72, 189, 466, 670, 766, 928
AvaII	GGWCC	1 cut(s)	281
BaeI	ACNNNNGTAYC	2 cut(s)	1127, 1160
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	4 cut(s)	279, 321, 336, 1279
BbsI	GAAGAC	1 cut(s)	1299
Bbv12I	GWGCWC	2 cut(s)	279, 1279
BbvI	GCAGC	4 cut(s)	233, 397, 454, 667
BccI	CCATC	1 cut(s)	635
BcgI	CGANNNNNNTGC	4 cut(s)	253, 287, 305, 339
BciT130I	CCWGG	2 cut(s)	233, 286
BciVI	GTATCC	1 cut(s)	1128
BclI	TGATCA	2 cut(s)	436, 705
BcnI	CCSGG	2 cut(s)	243, 656
BcoDI	GTCTC	1 cut(s)	1077
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	1128
BisI	GCNGC	7 cut(s)	86, 238, 247, 411, 468, 681, 750
BlsI	GCNGC	7 cut(s)	87, 239, 248, 412, 469, 682, 751
Bme1390I	CCNGG	4 cut(s)	233, 243, 286, 656
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	239, 281
BmiI	GGNNCC	6 cut(s)	230, 241, 283, 333, 353, 394
BmrFI	CCNGG	4 cut(s)	233, 243, 286, 656
BmrI	ACTGGG	3 cut(s)	128, 537, 1306
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	3 cut(s)	128, 537, 1306
BpiI	GAAGAC	1 cut(s)	1299
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpmI	CTGGAG	2 cut(s)	215, 752
BpuEI	CTTGAG	1 cut(s)	1263
BpuMI	CCSGG	2 cut(s)	243, 656
BsaJI	CCNNGG	5 cut(s)	232, 241, 284, 327, 1101
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	7 cut(s)	328, 341, 563, 913, 1107, 1125, 1228
Bse1I	ACTGG	4 cut(s)	134, 532, 882, 1301
Bse3DI	GCAATG	1 cut(s)	1290
BseBI	CCWGG	2 cut(s)	233, 286
BseDI	CCNNGG	5 cut(s)	232, 241, 284, 327, 1101
BseGI	GGATG	1 cut(s)	1003
BseLI	CCNNNNNNNGG	7 cut(s)	328, 341, 563, 913, 1107, 1125, 1228
BseMI	GCAATG	1 cut(s)	1290
BseNI	ACTGG	4 cut(s)	134, 532, 882, 1301
BseRI	GAGGAG	6 cut(s)	47, 209, 241, 749, 829, 974
BseXI	GCAGC	4 cut(s)	233, 397, 454, 667
Bsh1236I	CGCG	2 cut(s)	291, 995
BshFI	GGCC	2 cut(s)	240, 798
BshNI	GGYRCC	1 cut(s)	392
BsiHKAI	GWGCWC	2 cut(s)	279, 1279
BsiSI	CCGG	4 cut(s)	243, 396, 557, 656
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	7 cut(s)	328, 341, 563, 913, 1107, 1125, 1228
BsmAI	GTCTC	1 cut(s)	1077
BsmBI	CGTCTC	1 cut(s)	1077
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	2 cut(s)	592, 871
BsnI	GGCC	2 cut(s)	240, 798
Bsp1286I	GDGCHC	4 cut(s)	279, 321, 336, 1279
Bsp143I	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
BspANI	GGCC	2 cut(s)	240, 798
BspFNI	CGCG	2 cut(s)	291, 995
BspLI	GGNNCC	6 cut(s)	230, 241, 283, 333, 353, 394
BspPI	GGATC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	1290
BsrI	ACTGG	4 cut(s)	134, 532, 882, 1301
BssECI	CCNNGG	5 cut(s)	232, 241, 284, 327, 1101
BssMI	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	233, 286
Bst4CI	ACNGT	1 cut(s)	1088
Bst6I	CTCTTC	5 cut(s)	98, 417, 575, 716, 1001
BstC8I	GCNNGC	2 cut(s)	840, 993
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	1 cut(s)	1003
BstFNI	CGCG	2 cut(s)	291, 995
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	7 cut(s)	261, 439, 474, 496, 708, 1078, 1159
BstMAI	GTCTC	1 cut(s)	1077
BstMBI	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 246, 363, 677, 736
BstNI	CCWGG	2 cut(s)	233, 286
BstSCI	CCNGG	4 cut(s)	231, 241, 284, 654
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	2 cut(s)	291, 995
BstV1I	GCAGC	4 cut(s)	233, 397, 454, 667
BstV2I	GAAGAC	1 cut(s)	1299
BsuI	GTATCC	1 cut(s)	1128
BsuRI	GGCC	2 cut(s)	240, 798
BtgZI	GCGATG	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	1003
Cac8I	GCNNGC	2 cut(s)	840, 993
CaiI	CAGNNNCTG	1 cut(s)	1241
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	239, 281
CseI	GACGC	1 cut(s)	280
CviAII	CATG	4 cut(s)	256, 677, 1021, 1120
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	7 cut(s)	260, 438, 473, 495, 707, 1077, 1158
DpnII	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	5 cut(s)	98, 417, 575, 716, 1001
EarI	CTCTTC	5 cut(s)	98, 417, 575, 716, 1001
Ecl136II	GAGCTC	2 cut(s)	277, 1277
Eco130I	CCWWGG	1 cut(s)	327
Eco24I	GRGCYC	4 cut(s)	279, 321, 336, 1279
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	2 cut(s)	277, 1277
EcoICRI	GAGCTC	2 cut(s)	277, 1277
EcoRII	CCWGG	2 cut(s)	231, 284
EcoT14I	CCWWGG	1 cut(s)	327
EcoT38I	GRGCYC	4 cut(s)	279, 321, 336, 1279
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	1077
FaeI	CATG	4 cut(s)	259, 680, 1024, 1123
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	255, 676, 1020, 1119
FbaI	TGATCA	2 cut(s)	436, 705
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	7 cut(s)	86, 238, 247, 411, 468, 681, 750
FokI	GGATG	1 cut(s)	1010
FriOI	GRGCYC	4 cut(s)	279, 321, 336, 1279
Fsp4HI	GCNGC	7 cut(s)	86, 238, 247, 411, 468, 681, 750
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	7 cut(s)	86, 238, 247, 411, 468, 681, 750
GsuI	CTGGAG	2 cut(s)	215, 752
HaeIII	GGCC	2 cut(s)	240, 798
HapII	CCGG	4 cut(s)	243, 396, 557, 656
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	4 cut(s)	259, 680, 1024, 1123
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	2 cut(s)	139, 295
HindII	GTYRAC	2 cut(s)	139, 295
HinfI	GANTC	4 cut(s)	5, 399, 602, 661
HpaII	CCGG	4 cut(s)	243, 396, 557, 656
HphI	GGTGA	6 cut(s)	72, 189, 466, 670, 766, 928
Hpy166II	GTNNAC	3 cut(s)	9, 139, 295
Hpy188I	TCNGA	4 cut(s)	316, 638, 1161, 1203
Hpy188III	TCNNGA	3 cut(s)	377, 1114, 1331
Hpy8I	GTNNAC	3 cut(s)	9, 139, 295
HpyAV	CCTTC	2 cut(s)	916, 1124
HpyCH4III	ACNGT	1 cut(s)	1088
HpyCH4V	TGCA	4 cut(s)	452, 542, 823, 991
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 246, 363, 677, 736
HpyF3I	CTNAG	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	259, 680, 1024, 1123
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	2 cut(s)	436, 705
Kzo9I	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
LmnI	GCTCC	4 cut(s)	234, 254, 331, 736
Lsp1109I	GCAGC	4 cut(s)	233, 397, 454, 667
LweI	GCATC	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	7 cut(s)	260, 438, 473, 495, 707, 1077, 1158
MboI	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
MhlI	GDGCHC	4 cut(s)	279, 321, 336, 1279
MluCI	AATT	2 cut(s)	616, 775
MlyI	GAGTC	2 cut(s)	14, 611
MseI	TTAA	3 cut(s)	504, 596, 765
MslI	CAYNNNNRTG	1 cut(s)	996
MspI	CCGG	4 cut(s)	243, 396, 557, 656
MspR9I	CCNGG	4 cut(s)	233, 243, 286, 656
Mva1269I	GAATGC	2 cut(s)	592, 871
MvaI	CCWGG	2 cut(s)	233, 286
MvnI	CGCG	2 cut(s)	291, 995
MwoI	GCNNNNNNNGC	5 cut(s)	243, 246, 363, 677, 736
NciI	CCSGG	2 cut(s)	243, 656
NdeII	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
NlaIII	CATG	4 cut(s)	259, 680, 1024, 1123
NlaIV	GGNNCC	6 cut(s)	230, 241, 283, 333, 353, 394
NmeAIII	GCCGAG	1 cut(s)	616
PctI	GAATGC	2 cut(s)	592, 871
PfeI	GAWTC	2 cut(s)	399, 661
PflMI	CCANNNNNTGG	1 cut(s)	1125
PkrI	GCNGC	7 cut(s)	87, 239, 248, 412, 469, 682, 751
PleI	GAGTC	2 cut(s)	13, 610
PpsI	GAGTC	2 cut(s)	13, 610
Psp124BI	GAGCTC	2 cut(s)	279, 1279
Psp6I	CCWGG	2 cut(s)	231, 284
PspGI	CCWGG	2 cut(s)	231, 284
PspN4I	GGNNCC	6 cut(s)	230, 241, 283, 333, 353, 394
PspPI	GGNCC	2 cut(s)	239, 281
PstNI	CAGNNNCTG	1 cut(s)	1241
RseI	CAYNNNNRTG	1 cut(s)	996
SacI	GAGCTC	2 cut(s)	279, 1279
SaqAI	TTAA	3 cut(s)	504, 596, 765
SatI	GCNGC	7 cut(s)	86, 238, 247, 411, 468, 681, 750
Sau3AI	GATC	7 cut(s)	258, 436, 471, 493, 705, 1075, 1156
Sau96I	GGNCC	2 cut(s)	239, 281
SchI	GAGTC	2 cut(s)	14, 611
ScrFI	CCNGG	4 cut(s)	233, 243, 286, 656
SduI	GDGCHC	4 cut(s)	279, 321, 336, 1279
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	996
SmlI	CTYRAG	1 cut(s)	1278
SmoI	CTYRAG	1 cut(s)	1278
Sse9I	AATT	2 cut(s)	616, 775
SstI	GAGCTC	2 cut(s)	279, 1279
StyD4I	CCNGG	4 cut(s)	231, 241, 284, 654
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	1088
TaqI	TCGA	3 cut(s)	273, 509, 938
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	2 cut(s)	616, 775
TauI	GCSGC	3 cut(s)	88, 240, 752
TfiI	GAWTC	2 cut(s)	399, 661
Tru1I	TTAA	3 cut(s)	504, 596, 765
Tru9I	TTAA	3 cut(s)	504, 596, 765
TseI	GCWGC	4 cut(s)	246, 410, 467, 680
TspDTI	ATGAA	3 cut(s)	192, 1019, 1136
Van91I	CCANNNNNTGG	1 cut(s)	1125
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.