Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Reverse (-)

3043102 .. 3045897

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGGGTTGGCAGTTGCATGGGGAATGCTGATAGGCTCCGTTATTGGGTTCTTACTGGCAGTGTCCGTAGTGATTGGAGCTCTCGTCTGCCTCAAATGCCGGACAAACCTCCGTACGGTTACGAGTATGTCAGCGTCGCAGAGGATCACAGCAGCCAGCGCCGCCCAGTCGGACTCCAACCTCGGCCAAGACTCACCGCGAAGTTCGGAGTGGAGCAACATGTCCATATGGCTCGAGGCCCTTAAGAAAAAGACCGTCGTCTCCGCTTGTGGTATACCCAAGTATAATTACGGAGACATAAAGAAAGCGACGTGTGACTTCACGACGGCTATTGGGCAAGGGGCGTTTGGACCTGTTTACAAGGCCCAAATGGGCACCGGCGACACTTTTGCTGTTAAAGTTCTTGCTGCGGATTCCAGGCAAGGCCAGCATGAGTTTTTAGCTGAGGTTTTGTTACTTGCAAGATTACACCACAACAACCTTGTGAACTTGATGGGATATGCTGCCGAAATGGAGCAGCTTATGCTTCTTTATAATTACATGAGCAATGGCAGTCTTGATTCTCATTTACATGATGATAATCAGGTGCCGTTGAGCTGGGATTTGAGGGTTGCAATAGCTCTTGATGTTGCAAGGGGATTGGAATACCTACATTACGGGGCTGTTCCTCCTGTTGTGCACCGCGACATCAAGTCTTCCAACATACTGTTGGACCAGTCAATGAAGGCTAAGGTTGCTGATTTCGGGCTTTCAAGACATGACAAGATTAAATCACGTTCATCTGATATCAGGGGAACTTTTGGATATGTTGATCCTGAGTATGTGGTTACAAGAATCTTTACCAAGAAATGTGATGTTTATAGTTTTGGTGTACTGCTCTTTGAACTAATTACAGGCAGGAATCCACAGCAAGGTCTCATGGAATATGTGGAATTTGTAAGTTGCGGACCTTCATTGCTTTCTTTCATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

325

Amino Acids

35.65

Weight (kDa)

7.64

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	108 - 308	4.3e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	110 - 305	4.4e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB1I	GGYRCC	2 cut(s)	377, 589
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	2 cut(s)	202, 687
AciI	CCGC	6 cut(s)	165, 200, 267, 413, 685, 948
AclWI	GGATC	2 cut(s)	155, 809
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	935
AfaI	GTAC	2 cut(s)	118, 876
AfiI	CCNNNNNNNGG	3 cut(s)	48, 118, 914
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	2 cut(s)	222, 314
AgsI	TTSAA	2 cut(s)	756, 887
AhdI	GACNNNNNGTC	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	5 cut(s)	83, 446, 523, 600, 623
AluI	AGCT	5 cut(s)	83, 446, 523, 600, 623
Alw21I	GWGCWC	2 cut(s)	85, 684
Alw26I	GTCTC	3 cut(s)	268, 291, 923
Alw44I	GTGCAC	1 cut(s)	680
AlwI	GGATC	2 cut(s)	155, 809
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	187, 240, 366, 427
ApaLI	GTGCAC	1 cut(s)	680
ApeKI	GCWGC	4 cut(s)	155, 410, 506, 520
ApoI	RAATTY	1 cut(s)	935
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	5 cut(s)	241, 353, 367, 715, 950
AsuHPI	GGTGA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	353, 715, 950
BaeGI	GKGCMC	2 cut(s)	380, 684
BanI	GGYRCC	2 cut(s)	377, 589
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	2 cut(s)	85, 684
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	167, 397, 493, 532
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	2 cut(s)	345, 577
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	268, 291, 923
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
BlsI	GCNGC	5 cut(s)	157, 166, 412, 508, 522
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	3 cut(s)	353, 715, 950
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	5 cut(s)	241, 353, 367, 715, 950
BmiI	GGNNCC	3 cut(s)	40, 379, 591
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
BoxI	GACNNNNGTC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	690
Bpu10I	CCTNAGC	2 cut(s)	447, 732
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	923
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 118, 914
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	63, 169, 718
Bse3DI	GCAATG	2 cut(s)	556, 956
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	48, 118, 914
BseMI	GCAATG	2 cut(s)	556, 956
BseMII	CTCAG	2 cut(s)	438, 810
BseNI	ACTGG	3 cut(s)	63, 169, 718
BseSI	GKGCMC	2 cut(s)	380, 684
BseXI	GCAGC	4 cut(s)	167, 397, 493, 532
BseYI	CCCAGC	1 cut(s)	600
Bsh1236I	CGCG	2 cut(s)	202, 687
BshFI	GGCC	4 cut(s)	189, 242, 368, 429
BshNI	GGYRCC	2 cut(s)	377, 589
BsiHKAI	GWGCWC	2 cut(s)	85, 684
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	103, 381
BsiWI	CGTACG	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	48, 118, 914
BsmAI	GTCTC	3 cut(s)	268, 291, 923
BsmBI	CGTCTC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	189, 242, 368, 429
Bso31I	GGTCTC	1 cut(s)	923
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	3 cut(s)	85, 380, 684
Bsp143I	GATC	2 cut(s)	147, 814
BspACI	CCGC	6 cut(s)	165, 200, 267, 413, 685, 948
BspANI	GGCC	4 cut(s)	189, 242, 368, 429
BspCNI	CTCAG	2 cut(s)	439, 811
BspFNI	CGCG	2 cut(s)	202, 687
BspHI	TCATGA	1 cut(s)	969
BspLI	GGNNCC	3 cut(s)	40, 379, 591
BspPI	GGATC	2 cut(s)	155, 809
BspT107I	GGYRCC	2 cut(s)	377, 589
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	923
BsrDI	GCAATG	2 cut(s)	556, 956
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	3 cut(s)	63, 169, 718
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	147, 814
BssNAI	GTATAC	1 cut(s)	278
Bst1107I	GTATAC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	121, 259, 711
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	160, 431
BstDEI	CTNAG	3 cut(s)	447, 732, 819
BstFNI	CGCG	2 cut(s)	202, 687
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	150, 817
BstMAI	GTCTC	3 cut(s)	268, 291, 923
BstMBI	GATC	2 cut(s)	147, 814
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 161, 164, 430, 526, 737
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	226
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	2 cut(s)	380, 684
BstUI	CGCG	2 cut(s)	202, 687
BstV1I	GCAGC	4 cut(s)	167, 397, 493, 532
BstV2I	GAAGAC	1 cut(s)	690
BstZ17I	GTATAC	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	189, 242, 368, 429
BtrI	CACGTC	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	160, 431
CciI	TCATGA	1 cut(s)	969
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	5 cut(s)	241, 353, 367, 715, 950
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	117, 875
CviAII	CATG	8 cut(s)	21, 223, 434, 544, 575, 761, 922, 970
CviQI	GTAC	2 cut(s)	117, 875
DdeI	CTNAG	3 cut(s)	447, 732, 819
DpnI	GATC	2 cut(s)	149, 816
DpnII	GATC	2 cut(s)	147, 814
DriI	GACNNNNNGTC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	923
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	3 cut(s)	353, 715, 950
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	790
EcoT38I	GRGCYC	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	8 cut(s)	24, 226, 437, 547, 578, 764, 925, 973
FatI	CATG	8 cut(s)	20, 222, 433, 543, 574, 760, 921, 969
FauNDI	CATATG	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
GsaI	CCCAGC	1 cut(s)	604
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	189, 242, 368, 429
HapII	CCGG	2 cut(s)	103, 381
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	8 cut(s)	24, 226, 437, 547, 578, 764, 925, 973
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	6 cut(s)	176, 194, 416, 563, 837, 904
HpaII	CCGG	2 cut(s)	103, 381
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	5 cut(s)	278, 361, 490, 682, 875
Hpy188I	TCNGA	3 cut(s)	175, 211, 787
Hpy188III	TCNNGA	6 cut(s)	325, 560, 626, 756, 818, 970
Hpy8I	GTNNAC	5 cut(s)	278, 361, 490, 682, 875
Hpy99I	CGWCG	4 cut(s)	142, 263, 316, 331
HpyAV	CCTTC	2 cut(s)	721, 963
HpyCH4III	ACNGT	3 cut(s)	121, 259, 711
HpyCH4IV	ACGT	2 cut(s)	314, 778
HpyCH4V	TGCA	5 cut(s)	20, 464, 617, 635, 682
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 161, 164, 430, 526, 737
HpyF3I	CTNAG	3 cut(s)	447, 732, 819
HpySE526I	ACGT	2 cut(s)	314, 778
Hsp92II	CATG	8 cut(s)	24, 226, 437, 547, 578, 764, 925, 973
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	147, 814
LmnI	GCTCC	4 cut(s)	44, 80, 216, 517
Lsp1109I	GCAGC	4 cut(s)	167, 397, 493, 532
MaeII	ACGT	2 cut(s)	314, 778
MaeIII	GTNAC	4 cut(s)	121, 317, 456, 829
MalI	GATC	2 cut(s)	149, 816
MboI	GATC	2 cut(s)	147, 814
MboII	GAAGA	1 cut(s)	690
MhlI	GDGCHC	3 cut(s)	85, 380, 684
MluCI	AATT	4 cut(s)	289, 538, 891, 935
MlyI	GAGTC	2 cut(s)	170, 188
MmeI	TCCRAC	4 cut(s)	153, 204, 693, 726
MnlI	CCTC	8 cut(s)	104, 122, 138, 194, 232, 442, 603, 681
MseI	TTAA	3 cut(s)	246, 399, 771
MslI	CAYNNNNRTG	1 cut(s)	573
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	103, 381
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	2 cut(s)	202, 687
MwoI	GCNNNNNNNGC	6 cut(s)	99, 161, 164, 430, 526, 737
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	2 cut(s)	147, 814
NlaIII	CATG	8 cut(s)	24, 226, 437, 547, 578, 764, 925, 973
NlaIV	GGNNCC	3 cut(s)	40, 379, 591
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	969
PciI	ACATGT	1 cut(s)	222
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	4 cut(s)	416, 563, 837, 904
Pfl23II	CGTACG	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	157, 166, 412, 508, 522
PleI	GAGTC	2 cut(s)	170, 188
PpsI	GAGTC	2 cut(s)	170, 188
PscI	ACATGT	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	419
PspLI	CGTACG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	40, 379, 591
PspPI	GGNCC	5 cut(s)	241, 353, 367, 715, 950
PspXI	VCTCGAGB	1 cut(s)	236
RsaI	GTAC	2 cut(s)	118, 876
RsaNI	GTAC	2 cut(s)	117, 875
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	246, 399, 771
SatI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
Sau3AI	GATC	2 cut(s)	147, 814
Sau96I	GGNCC	5 cut(s)	241, 353, 367, 715, 950
SchI	GAGTC	2 cut(s)	170, 188
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	3 cut(s)	85, 380, 684
Sfr274I	CTCGAG	1 cut(s)	236
SgrAI	CRCCGGYG	1 cut(s)	380
SinI	GGWCC	3 cut(s)	353, 715, 950
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	236, 245
SmoI	CTYRAG	2 cut(s)	236, 245
Sse9I	AATT	4 cut(s)	289, 538, 891, 935
SsiI	CCGC	6 cut(s)	165, 200, 267, 413, 685, 948
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	3 cut(s)	121, 259, 711
TaiI	ACGT	2 cut(s)	317, 781
TaqI	TCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	289, 538, 891, 935
TatI	WGTACW	1 cut(s)	874
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	4 cut(s)	416, 563, 837, 904
Tru1I	TTAA	3 cut(s)	246, 399, 771
Tru9I	TTAA	3 cut(s)	246, 399, 771
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	4 cut(s)	155, 410, 506, 520
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	740, 771, 945, 958
TspGWI	ACGGA	4 cut(s)	31, 58, 104, 309
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	680
VpaK11BI	GGWCC	3 cut(s)	353, 715, 950
XapI	RAATTY	1 cut(s)	935
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.