Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Reverse (-)

2904267 .. 2906687

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG040400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAAGGGTTGGCAGTTGCATGGGGAATGCTGATAGGCTCCGTTATTGGGTTCTTACTGGCAGTGTCCGTAGTGATTGGAGCTCTCGTCTGCCTCAAATGCCGGACAAACCTCCGTACGGGTACGAGTGTGTCAGCGTCGCAGAGGATCACAGCCGCCAGCGCCGCCGAGTCGGACTCCAACCTCGGCCAAGACTCACCGCGAAGTTCGGAGTGGAGCAACATGTCCATGTGGCTCGAGGCCCTTAAGAAAAAGACCGTCGTCTCCGCTTGTGGTATACCCAAGTATAATTACGGAGACATAAAGAAAGCGACGTGTGACTTCACGACGGCTATTGGGCAAGGGGCGTTTGGACCTGTTTACAAGGCCCAAATGAGCACCGGCGACACTTTTGCTGTTAAAGTTCTTGCTGCGGATTCCAGGCAAGGCCAGCATGAGTTTTTAGCTGAGGTTTTGTTACTTGCAAGATTACACCACAACAACCTTGTGAACTTGATGGGATATGCTGCCGAAATGGAGCAGCTTATGCTTCTTTATAATTACATGAGCAATGGCAGTCTTGATTCTCATTTACATGATGATAATCAGGTGCCATTGAGCTGGGATTTGAGGGTTGCAATAGCTCTTGATGTTGCAAGGGGATTGGAATACCTACATTATGGGGCCACAGTGGACGCGGCAGGTAAACTTGGGTGGGAAGAGATTGTGGACATTCGTCTTAATGGAGAATTTGATATACAAGAACTAGCTCAGGTTGCTGATCTTGCTTACAGATGTGTTAGTGATGTCTCCAGAAAACGGCCTTCTATGAGGAACATAGTGCAGACATTATCAGGCATTTTGATGAAGAGACGTAGCGCAAAGAAACCCCAGCAAACCCCAACTACAGCAGCTGAAGAAACTTACATTGAAATAGATCTGATAGAGAAGCAGGATGCTTTAATTGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

317

Amino Acids

34.72

Weight (kDa)

5.74

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	108 - 220	7.2e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	110 - 219	5.7e-18	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	2 cut(s)	202, 677
AciI	CCGC	6 cut(s)	156, 165, 200, 267, 413, 677
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	2 cut(s)	118, 124
AfiI	CCNNNNNNNGG	3 cut(s)	48, 118, 798
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	2 cut(s)	222, 314
AgsI	TTSAA	2 cut(s)	911, 947
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	7 cut(s)	83, 446, 523, 600, 623, 749, 893
AluI	AGCT	7 cut(s)	83, 446, 523, 600, 623, 749, 893
Alw21I	GWGCWC	2 cut(s)	85, 380
Alw26I	GTCTC	4 cut(s)	268, 291, 793, 844
AlwI	GGATC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	6 cut(s)	187, 240, 366, 427, 663, 800
ApeKI	GCWGC	4 cut(s)	410, 506, 520, 890
ApoI	RAATTY	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	164, 860
AspS9I	GGNCC	4 cut(s)	241, 353, 367, 663
AsuHPI	GGTGA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	2 cut(s)	85, 380
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	397, 493, 532, 902
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	2 cut(s)	345, 815
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	4 cut(s)	268, 291, 793, 844
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	671
BglII	AGATCT	1 cut(s)	916
BisI	GCNGC	7 cut(s)	156, 165, 411, 507, 521, 678, 891
BlsI	GCNGC	7 cut(s)	157, 166, 412, 508, 522, 679, 892
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	4 cut(s)	241, 353, 367, 663
BmiI	GGNNCC	3 cut(s)	40, 591, 664
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	925
BoxI	GACNNNNGTC	2 cut(s)	260, 714
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	1 cut(s)	775
Bpu10I	CCTNAGC	2 cut(s)	447, 750
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 118, 798
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	940
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	3 cut(s)	48, 118, 798
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	438, 764
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	4 cut(s)	397, 493, 532, 902
BseYI	CCCAGC	2 cut(s)	600, 870
BsgI	GTGCAG	1 cut(s)	842
Bsh1236I	CGCG	2 cut(s)	202, 677
BshFI	GGCC	6 cut(s)	189, 242, 368, 429, 665, 802
BshNI	GGYRCC	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	85, 380
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	103, 381
BsiWI	CGTACG	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	48, 118, 798
BsmAI	GTCTC	4 cut(s)	268, 291, 793, 844
BsmBI	CGTCTC	2 cut(s)	268, 844
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	6 cut(s)	189, 242, 368, 429, 665, 802
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	85, 380
Bsp143I	GATC	3 cut(s)	147, 760, 916
BspACI	CCGC	6 cut(s)	156, 165, 200, 267, 413, 677
BspANI	GGCC	6 cut(s)	189, 242, 368, 429, 665, 802
BspCNI	CTCAG	2 cut(s)	439, 763
BspFNI	CGCG	2 cut(s)	202, 677
BspLI	GGNNCC	3 cut(s)	40, 591, 664
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	3 cut(s)	147, 760, 916
BssNAI	GTATAC	1 cut(s)	278
Bst1107I	GTATAC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	259, 670
Bst6I	CTCTTC	2 cut(s)	693, 842
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	160, 431
BstDEI	CTNAG	2 cut(s)	447, 750
BstF5I	GGATG	1 cut(s)	940
BstFNI	CGCG	2 cut(s)	202, 677
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	164, 860
BstKTI	GATC	3 cut(s)	150, 763, 919
BstMAI	GTCTC	4 cut(s)	268, 291, 793, 844
BstMBI	GATC	3 cut(s)	147, 760, 916
BstMWI	GCNNNNNNNGC	7 cut(s)	99, 161, 164, 430, 526, 755, 764
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	226
BstPAI	GACNNNNGTC	2 cut(s)	260, 714
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	885
BstUI	CGCG	2 cut(s)	202, 677
BstV1I	GCAGC	4 cut(s)	397, 493, 532, 902
BstX2I	RGATCY	1 cut(s)	916
BstXI	CCANNNNNNTGG	1 cut(s)	600
BstYI	RGATCY	1 cut(s)	916
BstZ17I	GTATAC	1 cut(s)	278
BsuRI	GGCC	6 cut(s)	189, 242, 368, 429, 665, 802
BtrI	CACGTC	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	940
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 675
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	160, 431
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	2 cut(s)	164, 860
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	4 cut(s)	241, 353, 367, 663
CseI	GACGC	2 cut(s)	126, 683
Csp6I	GTAC	2 cut(s)	117, 123
CviAII	CATG	6 cut(s)	21, 223, 229, 434, 544, 575
CviQI	GTAC	2 cut(s)	117, 123
DdeI	CTNAG	2 cut(s)	447, 750
DpnI	GATC	3 cut(s)	149, 762, 918
DpnII	GATC	3 cut(s)	147, 760, 916
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	693, 842
EarI	CTCTTC	2 cut(s)	693, 842
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	85
Esp3I	CGTCTC	2 cut(s)	268, 844
FaeI	CATG	6 cut(s)	24, 226, 232, 437, 547, 578
FatI	CATG	6 cut(s)	20, 222, 228, 433, 543, 574
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	7 cut(s)	156, 165, 411, 507, 521, 678, 891
FokI	GGATG	1 cut(s)	947
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	7 cut(s)	156, 165, 411, 507, 521, 678, 891
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	2 cut(s)	163, 859
GluI	GCNGC	7 cut(s)	156, 165, 411, 507, 521, 678, 891
GsaI	CCCAGC	2 cut(s)	604, 874
GsuI	CTGGAG	1 cut(s)	775
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	6 cut(s)	189, 242, 368, 429, 665, 802
HapII	CCGG	2 cut(s)	103, 381
HgaI	GACGC	2 cut(s)	126, 683
HhaI	GCGC	2 cut(s)	164, 860
Hin1II	CATG	6 cut(s)	24, 226, 232, 437, 547, 578
Hin6I	GCGC	2 cut(s)	162, 858
HinP1I	GCGC	2 cut(s)	162, 858
HinfI	GANTC	5 cut(s)	170, 176, 194, 416, 563
HpaII	CCGG	2 cut(s)	103, 381
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	6 cut(s)	278, 361, 490, 673, 686, 709
Hpy188I	TCNGA	3 cut(s)	175, 211, 921
Hpy188III	TCNNGA	4 cut(s)	325, 560, 626, 792
Hpy8I	GTNNAC	6 cut(s)	278, 361, 490, 673, 686, 709
Hpy99I	CGWCG	4 cut(s)	142, 263, 316, 331
HpyAV	CCTTC	1 cut(s)	813
HpyCH4III	ACNGT	2 cut(s)	259, 670
HpyCH4IV	ACGT	2 cut(s)	314, 853
HpyCH4V	TGCA	5 cut(s)	20, 464, 617, 635, 823
HpyF10VI	GCNNNNNNNGC	7 cut(s)	99, 161, 164, 430, 526, 755, 764
HpyF3I	CTNAG	2 cut(s)	447, 750
HpySE526I	ACGT	2 cut(s)	314, 853
Hsp92II	CATG	6 cut(s)	24, 226, 232, 437, 547, 578
HspAI	GCGC	2 cut(s)	162, 858
Kzo9I	GATC	3 cut(s)	147, 760, 916
LmnI	GCTCC	4 cut(s)	44, 80, 216, 517
Lsp1109I	GCAGC	4 cut(s)	397, 493, 532, 902
LweI	GCATC	1 cut(s)	925
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	2 cut(s)	314, 853
MaeIII	GTNAC	2 cut(s)	317, 456
MalI	GATC	3 cut(s)	149, 762, 918
MboI	GATC	3 cut(s)	147, 760, 916
MboII	GAAGA	3 cut(s)	710, 859, 908
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	2 cut(s)	85, 380
MluCI	AATT	4 cut(s)	289, 538, 728, 942
MlyI	GAGTC	3 cut(s)	170, 179, 188
MmeI	TCCRAC	2 cut(s)	153, 204
MnlI	CCTC	8 cut(s)	104, 122, 138, 194, 232, 442, 603, 804
MseI	TTAA	4 cut(s)	246, 399, 720, 941
MslI	CAYNNNNRTG	3 cut(s)	227, 573, 842
MspA1I	CMGCKG	1 cut(s)	893
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	103, 381
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	2 cut(s)	202, 677
MwoI	GCNNNNNNNGC	7 cut(s)	99, 161, 164, 430, 526, 755, 764
NdeII	GATC	3 cut(s)	147, 760, 916
NlaIII	CATG	6 cut(s)	24, 226, 232, 437, 547, 578
NlaIV	GGNNCC	3 cut(s)	40, 591, 664
NmeAIII	GCCGAG	2 cut(s)	165, 193
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	236
PciI	ACATGT	1 cut(s)	222
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	416, 563
Pfl23II	CGTACG	1 cut(s)	116
PkrI	GCNGC	7 cut(s)	157, 166, 412, 508, 522, 679, 892
PleI	GAGTC	3 cut(s)	170, 178, 188
PpsI	GAGTC	3 cut(s)	170, 178, 188
PscI	ACATGT	1 cut(s)	222
PshAI	GACNNNNGTC	2 cut(s)	260, 714
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	2 cut(s)	600, 870
PspGI	CCWGG	1 cut(s)	419
PspLI	CGTACG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	40, 591, 664
PspPI	GGNCC	4 cut(s)	241, 353, 367, 663
PspXI	VCTCGAGB	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	916
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	2 cut(s)	118, 124
RsaNI	GTAC	2 cut(s)	117, 123
RseI	CAYNNNNRTG	3 cut(s)	227, 573, 842
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	246, 399, 720, 941
SatI	GCNGC	7 cut(s)	156, 165, 411, 507, 521, 678, 891
Sau3AI	GATC	3 cut(s)	147, 760, 916
Sau96I	GGNCC	4 cut(s)	241, 353, 367, 663
SchI	GAGTC	3 cut(s)	170, 179, 188
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	85, 380
SfaNI	GCATC	1 cut(s)	925
SfcI	CTRYAG	1 cut(s)	885
Sfr274I	CTCGAG	1 cut(s)	236
SgrAI	CRCCGGYG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	3 cut(s)	227, 573, 842
SmlI	CTYRAG	2 cut(s)	236, 245
SmoI	CTYRAG	2 cut(s)	236, 245
Sse9I	AATT	4 cut(s)	289, 538, 728, 942
SsiI	CCGC	6 cut(s)	156, 165, 200, 267, 413, 677
SspMI	CTAG	1 cut(s)	746
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	259, 670
TaiI	ACGT	2 cut(s)	317, 856
TaqI	TCGA	1 cut(s)	237
TasI	AATT	4 cut(s)	289, 538, 728, 942
TauI	GCSGC	3 cut(s)	158, 167, 680
TfiI	GAWTC	2 cut(s)	416, 563
Tru1I	TTAA	4 cut(s)	246, 399, 720, 941
Tru9I	TTAA	4 cut(s)	246, 399, 720, 941
TscAI	CASTG	2 cut(s)	69, 675
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	4 cut(s)	410, 506, 520, 890
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	860
TspGWI	ACGGA	4 cut(s)	31, 58, 104, 309
TspRI	CASTG	2 cut(s)	69, 675
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.