Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

31557397 .. 31557717

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAAGGCGAGCCAGTTGGACTGATCATTGGGGTTTCTATAGGGGTAGTGATTGGAGTGCTTTTGGCAATTTCTGGGTTCTTCTGCGTTAGGTACCATAGGAAGCGTATGCAAATAGGGAACAGCAGTTCTCGAAGGGCAGCAAATCTTCCTATTCGTGCTAATGGCGCCGACTCTTGTACAATTTTGTCAGACTCGACACTTGGTCCAGACTCACCTGTCAAATCTGAACGGACTGGTGGTTCCTTCTGGTTTGTTGAAGGATTTAAGAGGAGTAATGTAGTCTCAATGTCTGGAATACCCGAGTATTCTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

106

Amino Acids

11.38

Weight (kDa)

9.83

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	2 cut(s)	93, 167
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	95, 181
AgsI	TTSAA	1 cut(s)	260
AhdI	GACNNNNNGTC	1 cut(s)	204
AloI	GAACNNNNNNTCC	4 cut(s)	112, 144, 226, 258
Alw26I	GTCTC	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	140
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	93, 167
BbvI	GCAGC	1 cut(s)	152
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	206
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	95, 169, 244
BsaHI	GRCGYC	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	14, 241
BseNI	ACTGG	2 cut(s)	14, 241
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	152
BshNI	GGYRCC	2 cut(s)	93, 167
BsiHKCI	CYCGRG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	302
Bsp1407I	TGTACA	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	95, 169, 244
BspT107I	GGYRCC	2 cut(s)	93, 167
BsrGI	TGTACA	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	14, 241
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	94, 180
CviJI	RGCY	1 cut(s)	13
CviKI_1	RGCY	1 cut(s)	13
CviQI	GTAC	2 cut(s)	94, 180
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1105I	GACNNNNNGTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	302
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaiI	YATR	3 cut(s)	41, 99, 110
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	141
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	141
HaeII	RGCGCY	1 cut(s)	171
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	3 cut(s)	173, 194, 212
HphI	GGTGA	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	193, 229
Hpy188III	TCNNGA	3 cut(s)	132, 209, 294
HpyAV	CCTTC	3 cut(s)	129, 254, 256
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	168
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KpnI	GGTACC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	7 cut(s)	27, 60, 222, 222, 231, 235, 279
Lsp1109I	GCAGC	1 cut(s)	152
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	73, 140
MluCI	AATT	2 cut(s)	69, 183
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	167, 188, 206
MnlI	CCTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	167
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	1 cut(s)	24
NlaIV	GGNNCC	3 cut(s)	95, 169, 244
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	3 cut(s)	167, 188, 206
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	167, 188, 206
PspN4I	GGNNCC	3 cut(s)	95, 169, 244
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	95, 181
RsaNI	GTAC	2 cut(s)	94, 180
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	3 cut(s)	167, 188, 206
SetI	ASST	2 cut(s)	95, 220
SfcI	CTRYAG	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	69, 183
SspDI	GGCGCC	1 cut(s)	167
TaqI	TCGA	2 cut(s)	133, 197
TasI	AATT	2 cut(s)	69, 183
TatI	WGTACW	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.