Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Reverse (-)

1386255 .. 1388653

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G029800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGATGAACTCAATCATTTTGCATTTGGTGGTAGGCATTGTTGCAGGGTTCGCATTGGGATTGGTTCTAGGAATTGGAGTGGTCTGCTGCCTCAGAATCCGAAGAAGAAGGTGCACAAGGATACAATCACCGAGGTCCATTTCAGCGCAGAGAGAAAAAGCACCCAAATTACCAGTCAAAGGAGTGAGTAACAATGGCGTTGACTCCAGCAACACCAACACCACTGTCTCTGAGTTCTCCAACTTTGGCCAAGACTCGCCCAGAACTTCGGAGTGGACCAACATGCCCCTCTGGCTGGAGGGCCTCAGGAGAAAGAGCGTCGTCTCAGCTTGCGGCATACCCAAGTATTCTTTCAGAGATGTACAGAAGGCGACTTATAATTTTACGACAGCTATTGGGCAAGGAGCGTTTGGGCTTGTTTACAAGGCCCAAATGAGCACTGGTGAGACTTTTGCTGTTAAAGTTCTTGCTGCTAATTCCACGCAAGGCCAAAACGAGTTTTTGGCTGAGGTTCTTTTACTTGGAAGATTGCACCACAAGAGCCTAGTCAACTTGGTGGGATACATGGCAGACGTGGGGCAGCATATGCTGCTCTACAAGTACATGAGTAATGGCAGTCTGTTTTCTCATTTACATGGGGATAATCGCAAGCCATTGAGCTGGGATTTGAGAGTTGACATAGCTCTTGATATTGCAAGGGGATTGGAATACCTACACTATGGGGCTGTTCCTTCTGTTGTGCACCGCGACATCAAGTCTTCCAACATACTGTTGGACCGATCAATGAGAGCCAGGGTTGCTGATTTCGGGCTTTCAAGACAAGACAGGAGCAAACTTCGTTCATCTAATATCAGGGGAACATATGGATATGTTGATCCCGAGTATGTGTTGACAAAGACATATACCAAGAAATGCGATGTTTATAGTTTTGGAGTGCTGCTGCTTGAAATTATTACAGGCAGGAACCCGCAGCAGGGCCTTATGGAATATGTGGAACTTGTGACAATCGACACGGAGGATAAACTGGGGTGGCAAGAGATTGTGGATTCTCGTCTTGATGGAAGATTCAATGTAGAACAACTCGCTAATGTTGCTGATCTTGCTTACAAATGTGTGAGTGGTCTGTCGAAAAACCGGCCTTCCATGAGGGACATTGTACAGAGCTTATCATGGATTTTGATGATGAAACATAACACGGAGATCTGCAAGCAAACCTCAAATGATGCAGCTGAAGAAACCTACATTGAAATAGATCTGCTGGACAATCAGGATCCTTTAATTGAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

430

Amino Acids

48.07

Weight (kDa)

8.92

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccII	CGCG	1 cut(s)	747
AciI	CCGC	3 cut(s)	333, 745, 968
AclWI	GGATC	3 cut(s)	869, 1265, 1278
AcoI	YGGCCR	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	1251
AfaI	GTAC	3 cut(s)	363, 602, 1158
AfiI	CCNNNNNNNGG	4 cut(s)	179, 295, 973, 974
AgsI	TTSAA	5 cut(s)	816, 947, 1069, 1247, 1283
AhdI	GACNNNNNGTC	1 cut(s)	754
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	791
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	329, 392, 660, 683, 1164, 1229
AluI	AGCT	6 cut(s)	329, 392, 660, 683, 1164, 1229
Alw21I	GWGCWC	3 cut(s)	116, 440, 744
Alw26I	GTCTC	3 cut(s)	232, 328, 440
Alw44I	GTGCAC	2 cut(s)	112, 740
AlwI	GGATC	3 cut(s)	869, 1265, 1278
Ama87I	CYCGRG	1 cut(s)	878
AoxI	GGCC	6 cut(s)	247, 301, 426, 487, 976, 1136
ApaLI	GTGCAC	2 cut(s)	112, 740
ApeKI	GCWGC	8 cut(s)	87, 470, 580, 589, 937, 940, 970, 1226
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	6 cut(s)	135, 276, 301, 427, 775, 976
AsuHPI	GGTGA	2 cut(s)	120, 455
AvaI	CYCGRG	1 cut(s)	878
AvaII	GGWCC	3 cut(s)	135, 276, 775
AxyI	CCTNAGG	1 cut(s)	305
BaeGI	GKGCMC	2 cut(s)	116, 744
BalI	TGGCCA	1 cut(s)	249
BamHI	GGATCC	1 cut(s)	1270
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	3 cut(s)	116, 440, 744
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	8 cut(s)	74, 457, 576, 592, 924, 927, 982, 1238
BccI	CCATC	1 cut(s)	1052
BciT130I	CCWGG	1 cut(s)	793
BciVI	GTATCC	2 cut(s)	114, 554
BcoDI	GTCTC	3 cut(s)	232, 328, 440
BfaI	CTAG	2 cut(s)	68, 545
BfuI	GTATCC	2 cut(s)	114, 554
BglI	GCCNNNNNGGC	1 cut(s)	292
BglII	AGATCT	2 cut(s)	1200, 1252
BisI	GCNGC	9 cut(s)	88, 334, 471, 581, 590, 938, 941, 971, 1227
BlsI	GCNGC	9 cut(s)	89, 335, 472, 582, 591, 939, 942, 972, 1228
Bme1390I	CCNGG	1 cut(s)	793
Bme18I	GGWCC	3 cut(s)	135, 276, 775
BmeRI	GACNNNNNGTC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	878
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	6 cut(s)	135, 276, 301, 427, 775, 976
BmiI	GGNNCC	2 cut(s)	965, 1272
BmrFI	CCNGG	1 cut(s)	793
BmrI	ACTGGG	1 cut(s)	1034
BmsI	GCATC	1 cut(s)	1213
BmuI	ACTGGG	1 cut(s)	1034
BpiI	GAAGAC	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	190, 317
Bpu10I	CCTNAGC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	131, 792
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 295, 973, 974
Bse118I	RCCGGY	1 cut(s)	1134
Bse1I	ACTGG	3 cut(s)	173, 445, 1029
Bse21I	CCTNAGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	793
BseDI	CCNNGG	2 cut(s)	131, 792
BseLI	CCNNNNNNNGG	4 cut(s)	179, 295, 973, 974
BseMII	CTCAG	5 cut(s)	106, 222, 319, 339, 498
BseNI	ACTGG	3 cut(s)	173, 445, 1029
BseSI	GKGCMC	2 cut(s)	116, 744
BseXI	GCAGC	8 cut(s)	74, 457, 576, 592, 924, 927, 982, 1238
BseYI	CCCAGC	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	6 cut(s)	249, 303, 428, 489, 978, 1138
BsiHKAI	GWGCWC	3 cut(s)	116, 440, 744
BsiHKCI	CYCGRG	1 cut(s)	878
BsiSI	CCGG	1 cut(s)	1135
BslFI	GGGAC	1 cut(s)	1163
BslI	CCNNNNNNNGG	4 cut(s)	179, 295, 973, 974
BsmAI	GTCTC	3 cut(s)	232, 328, 440
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	1163
BsnI	GGCC	6 cut(s)	249, 303, 428, 489, 978, 1138
BsoBI	CYCGRG	1 cut(s)	878
Bsp1286I	GDGCHC	3 cut(s)	116, 440, 744
Bsp1407I	TGTACA	2 cut(s)	361, 1156
Bsp143I	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
BspACI	CCGC	3 cut(s)	333, 745, 968
BspANI	GGCC	6 cut(s)	249, 303, 428, 489, 978, 1138
BspCNI	CTCAG	5 cut(s)	105, 223, 318, 338, 499
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	965, 1272
BspPI	GGATC	3 cut(s)	869, 1265, 1278
BsrFI	RCCGGY	1 cut(s)	1134
BsrGI	TGTACA	2 cut(s)	361, 1156
BsrI	ACTGG	3 cut(s)	173, 445, 1029
BssAI	RCCGGY	1 cut(s)	1134
BssECI	CCNNGG	2 cut(s)	131, 792
BssMI	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
Bst2UI	CCWGG	1 cut(s)	793
Bst4CI	ACNGT	2 cut(s)	226, 771
BstAPI	GCANNNNNTGC	2 cut(s)	586, 589
BstAUI	TGTACA	2 cut(s)	361, 1156
BstC8I	GCNNGC	3 cut(s)	331, 650, 1208
BstDEI	CTNAG	5 cut(s)	92, 231, 305, 325, 507
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	6 cut(s)	782, 877, 1099, 1203, 1255, 1273
BstMAI	GTCTC	3 cut(s)	232, 328, 440
BstMBI	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
BstMWI	GCNNNNNNNGC	7 cut(s)	50, 292, 586, 589, 797, 1091, 1100
BstNI	CCWGG	1 cut(s)	793
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	791
BstSLI	GKGCMC	2 cut(s)	116, 744
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	8 cut(s)	74, 457, 576, 592, 924, 927, 982, 1238
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	3 cut(s)	1200, 1252, 1270
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstYI	RGATCY	3 cut(s)	1200, 1252, 1270
Bsu36I	CCTNAGG	1 cut(s)	305
BsuI	GTATCC	2 cut(s)	114, 554
BsuRI	GGCC	6 cut(s)	249, 303, 428, 489, 978, 1138
BtgZI	GCGATG	1 cut(s)	930
BtrI	CACGTC	1 cut(s)	574
BtsIMutI	CAGTG	2 cut(s)	222, 438
Cac8I	GCNNGC	3 cut(s)	331, 650, 1208
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	1134
Cfr13I	GGNCC	6 cut(s)	135, 276, 301, 427, 775, 976
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	3 cut(s)	362, 601, 1157
CviAII	CATG	6 cut(s)	283, 565, 604, 635, 1144, 1170
CviQI	GTAC	3 cut(s)	362, 601, 1157
DdeI	CTNAG	5 cut(s)	92, 231, 305, 325, 507
DpnI	GATC	6 cut(s)	781, 876, 1098, 1202, 1254, 1272
DpnII	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
DriI	GACNNNNNGTC	1 cut(s)	754
EaeI	YGGCCR	1 cut(s)	247
Eam1105I	GACNNNNNGTC	1 cut(s)	754
Eco47I	GGWCC	3 cut(s)	135, 276, 775
Eco57I	CTGAAG	1 cut(s)	1251
Eco81I	CCTNAGG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	878
EcoO109I	RGGNCCY	2 cut(s)	301, 976
EcoRII	CCWGG	1 cut(s)	791
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	6 cut(s)	286, 568, 607, 638, 1147, 1173
FaqI	GGGAC	1 cut(s)	1163
FatI	CATG	6 cut(s)	282, 564, 603, 634, 1143, 1169
FauI	CCCGC	1 cut(s)	975
FauNDI	CATATG	2 cut(s)	585, 862
Fnu4HI	GCNGC	9 cut(s)	88, 334, 471, 581, 590, 938, 941, 971, 1227
Fsp4HI	GCNGC	9 cut(s)	88, 334, 471, 581, 590, 938, 941, 971, 1227
FspBI	CTAG	2 cut(s)	68, 545
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	9 cut(s)	88, 334, 471, 581, 590, 938, 941, 971, 1227
GsaI	CCCAGC	1 cut(s)	664
GsuI	CTGGAG	2 cut(s)	190, 317
HaeIII	GGCC	6 cut(s)	249, 303, 428, 489, 978, 1138
HapII	CCGG	1 cut(s)	1135
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	6 cut(s)	286, 568, 607, 638, 1147, 1173
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	4 cut(s)	202, 550, 676, 891
HindII	GTYRAC	4 cut(s)	202, 550, 676, 891
HinfI	GANTC	5 cut(s)	96, 203, 254, 1046, 1065
HpaII	CCGG	1 cut(s)	1135
HphI	GGTGA	2 cut(s)	120, 455
Hpy166II	GTNNAC	8 cut(s)	114, 202, 276, 421, 550, 676, 742, 891
Hpy188I	TCNGA	5 cut(s)	95, 101, 232, 271, 356
Hpy188III	TCNNGA	6 cut(s)	307, 686, 816, 878, 1055, 1268
Hpy8I	GTNNAC	8 cut(s)	114, 202, 276, 421, 550, 676, 742, 891
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	4 cut(s)	102, 361, 741, 1149
HpyCH4III	ACNGT	2 cut(s)	226, 771
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	8 cut(s)	22, 44, 114, 532, 695, 742, 1206, 1226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	50, 292, 586, 589, 797, 1091, 1100
HpyF3I	CTNAG	5 cut(s)	92, 231, 305, 325, 507
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	6 cut(s)	286, 568, 607, 638, 1147, 1173
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
LmnI	GCTCC	2 cut(s)	404, 828
Lsp1109I	GCAGC	8 cut(s)	74, 457, 576, 592, 924, 927, 982, 1238
LweI	GCATC	1 cut(s)	1213
MaeI	CTAG	2 cut(s)	68, 545
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	188, 1000
MalI	GATC	6 cut(s)	781, 876, 1098, 1202, 1254, 1272
MboI	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
MboII	GAAGA	6 cut(s)	114, 117, 537, 750, 1074, 1244
MflI	RGATCY	3 cut(s)	1200, 1252, 1270
MhlI	GDGCHC	3 cut(s)	116, 440, 744
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	6 cut(s)	72, 167, 379, 475, 948, 1278
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	197, 248
MmeI	TCCRAC	3 cut(s)	264, 753, 786
MnlI	CCTC	9 cut(s)	101, 126, 292, 299, 314, 502, 1009, 1140, 1225
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	2 cut(s)	459, 1277
MslI	CAYNNNNRTG	1 cut(s)	633
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	1 cut(s)	1135
MspR9I	CCNGG	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	793
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	7 cut(s)	50, 292, 586, 589, 797, 1091, 1100
NdeI	CATATG	2 cut(s)	585, 862
NdeII	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
NlaIII	CATG	6 cut(s)	286, 568, 607, 638, 1147, 1173
NlaIV	GGNNCC	2 cut(s)	965, 1272
NmuCI	GTSAC	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	96, 1046, 1065
PkrI	GCNGC	9 cut(s)	89, 335, 472, 582, 591, 939, 942, 972, 1228
PleI	GAGTC	2 cut(s)	197, 248
PpsI	GAGTC	2 cut(s)	197, 248
PsiI	TTATAA	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	791
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	791
PspN4I	GGNNCC	2 cut(s)	965, 1272
PspPI	GGNCC	6 cut(s)	135, 276, 301, 427, 775, 976
PsuI	RGATCY	3 cut(s)	1200, 1252, 1270
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	3 cut(s)	363, 602, 1158
RsaNI	GTAC	3 cut(s)	362, 601, 1157
RseI	CAYNNNNRTG	1 cut(s)	633
SaqAI	TTAA	2 cut(s)	459, 1277
SatI	GCNGC	9 cut(s)	88, 334, 471, 581, 590, 938, 941, 971, 1227
Sau3AI	GATC	6 cut(s)	779, 874, 1096, 1200, 1252, 1270
Sau96I	GGNCC	6 cut(s)	135, 276, 301, 427, 775, 976
SchI	GAGTC	2 cut(s)	197, 248
ScrFI	CCNGG	1 cut(s)	793
SduI	GDGCHC	3 cut(s)	116, 440, 744
SfaNI	GCATC	1 cut(s)	1213
SinI	GGWCC	3 cut(s)	135, 276, 775
SmiMI	CAYNNNNRTG	1 cut(s)	633
Sse9I	AATT	6 cut(s)	72, 167, 379, 475, 948, 1278
SsiI	CCGC	3 cut(s)	333, 745, 968
SspMI	CTAG	2 cut(s)	68, 545
StyD4I	CCNGG	1 cut(s)	791
TaaI	ACNGT	2 cut(s)	226, 771
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	1008, 1127
TaqII	GACCGA	1 cut(s)	792
TasI	AATT	6 cut(s)	72, 167, 379, 475, 948, 1278
TatI	WGTACW	3 cut(s)	361, 600, 1156
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	96, 1046, 1065
Tru1I	TTAA	2 cut(s)	459, 1277
Tru9I	TTAA	2 cut(s)	459, 1277
TscAI	CASTG	2 cut(s)	229, 445
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	8 cut(s)	87, 470, 580, 589, 937, 940, 970, 1226
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	3 cut(s)	20, 831, 1199
TspGWI	ACGGA	2 cut(s)	1028, 1211
TspRI	CASTG	2 cut(s)	229, 445
VneI	GTGCAC	2 cut(s)	112, 740
VpaK11BI	GGWCC	3 cut(s)	135, 276, 775
XceI	RCATGY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	2 cut(s)	437, 769
XspI	CTAG	2 cut(s)	68, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.