Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Reverse (-)

17459339 .. 17462318

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAAGGCCGAGCCAGCTGTGCTTATTGTTGGATTATCTATAGGGGTAGTGATTGGAGTGCTTTTGGCAATTTCTGGATTCTTCTGCATTAGGTACCATAGGAGGCGCTTGCAGATAGGGAATAGCAGTTCTCGGAGGGCAGCAACTATTCCTATTCGTGCAAATGGTGCTGACTCTTGTACTATATTGTCAGACTCGACACTTGGTCCGGATTCGCCTGTAAGATCTGGACAAAATGGTAGATCCTTCTGGCATGAAGGATTTAAGAAGAGCAATGTGGTCTCAATGTCTGGAATTCCCGAGTATTCTTACAAGGATCTGCAGAAAGCAACATATAACTTTACAACATTGATAGGGCAAGGTGCATTTGGTCCTGTGTACAAAGCTCAGATGTCAACGGGTGAGACTGTCGCTGTTAAAGTGCTTGCAACTGATTCTAAGCAAGGGGAGAACGAATTCCAGACAGAGGTTAAGCTATTGGGAAGGTTGCATCACCGAAACCTCGTGAACTTAATTGGATATTGTGCAGAAAAAGGCCAACATATGCTTATATATGTCTACATGAGTAAAGGCAGTTTGGCCTCTCATTTATACAGTGAAAAGCATGAGCCATTGAGCTGGGATTTGAGAGTTCTAATAGCTCTAGACGTAGCTAGGGGCTTGGAGTATCTTCATGATGGAGCAGTTCCTCCTGTAATACACCGTGATATTAAATCATCCAATATTCTGTTGGACCAATCCATGAGAGCTAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAAATGGTGGATAAACATGCAGCTAATATTAGGGGAACTTTTGGTTATCTTGATCCTGAATATATATCTACAAGGAATTTCACCAAGAAAAGTGACGTTTACAGCTACGGAGTTTTGCTCTTTGAGCTCATAGCTGCAAGAAATCCTCAACAGGGTTTAATGGAATATGTTGAACTTGCTGCGATGAATACAGAGGGGAAACTTGGGTGGGAAGAAATTGTGGATTCGCGTCTTAATGGGAGTTTCCATGTGCAAGAGCTCAACGAAATGGCAGCTCTGGCATATAAATGTGTTAGTCGTGCCCCCAAAAAAAGGCCTTCCATGAGAGACATCGTACAAGTGCTATCGCGGATGCTCAAAATGAGGCACAACAGGAATCATGTGAAATCCTTGTCATCTGTAACAGATGAAGGCACAACTGACGTGAACCAACCAGAAACCAGAATCCAAATGGCCGAACACCACAGAGAGGAGTCTGTGGACAGCCTAGCCGATACCTATGAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

430

Amino Acids

47.93

Weight (kDa)

8.48

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	112 - 373	4.7e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	114 - 375	1.4e-51	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	2 cut(s)	1009, 1129
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	1129
AclWI	GGATC	3 cut(s)	237, 324, 827
AcoI	YGGCCR	1 cut(s)	1233
AcsI	RAATTY	3 cut(s)	294, 455, 856
AfaI	GTAC	4 cut(s)	95, 181, 380, 1116
AfiI	CCNNNNNNNGG	4 cut(s)	466, 932, 1092, 1249
AgsI	TTSAA	2 cut(s)	774, 953
AhdI	GACNNNNNGTC	1 cut(s)	204
AjiI	CACGTC	1 cut(s)	1204
AloI	GAACNNNNNNTCC	2 cut(s)	112, 144
Alw21I	GWGCWC	2 cut(s)	909, 1041
Alw26I	GTCTC	3 cut(s)	286, 398, 1101
AlwI	GGATC	3 cut(s)	237, 324, 827
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	208
AoxI	GGCC	5 cut(s)	6, 535, 579, 1094, 1233
ApeKI	GCWGC	5 cut(s)	140, 800, 914, 959, 1052
ApoI	RAATTY	3 cut(s)	294, 455, 856
Asp700I	GAANNNNTTC	1 cut(s)	455
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	206, 371, 733
AsuHPI	GGTGA	3 cut(s)	413, 485, 853
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	206, 371, 733
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	909, 1041
BauI	CACGAG	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	909, 1041
BbvI	GCAGC	5 cut(s)	152, 812, 901, 946, 1064
BccI	CCATC	1 cut(s)	671
BcoDI	GTCTC	3 cut(s)	286, 398, 1101
BfaI	CTAG	4 cut(s)	644, 654, 750, 1268
BfmI	CTRYAG	2 cut(s)	39, 320
BfoI	RGCGCY	1 cut(s)	109
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	5 cut(s)	141, 801, 915, 960, 1053
BlsI	GCNGC	5 cut(s)	142, 802, 916, 961, 1054
Bme18I	GGWCC	3 cut(s)	206, 371, 733
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	1204
BmgT120I	GGNCC	3 cut(s)	206, 371, 733
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	2 cut(s)	499, 1122
BplI	GAGNNNNNCTC	2 cut(s)	882, 914
BsaI	GGTCTC	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	4 cut(s)	466, 932, 1092, 1249
Bse3DI	GCAATG	1 cut(s)	280
BseAI	TCCGGA	1 cut(s)	208
BseGI	GGATG	2 cut(s)	716, 1137
BseLI	CCNNNNNNNGG	4 cut(s)	466, 932, 1092, 1249
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	401
BseRI	GAGGAG	1 cut(s)	1265
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	5 cut(s)	152, 812, 901, 946, 1064
BseYI	CCCAGC	1 cut(s)	618
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	2 cut(s)	1009, 1129
BshFI	GGCC	5 cut(s)	8, 537, 581, 1096, 1235
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	909, 1041
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	466, 932, 1092, 1249
BsmAI	GTCTC	3 cut(s)	286, 398, 1101
BsnI	GGCC	5 cut(s)	8, 537, 581, 1096, 1235
Bso31I	GGTCTC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	909, 1041, 1084
Bsp13I	TCCGGA	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	224, 242, 316, 832
BspACI	CCGC	1 cut(s)	1129
BspANI	GGCC	5 cut(s)	8, 537, 581, 1096, 1235
BspCNI	CTCAG	1 cut(s)	400
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	2 cut(s)	1009, 1129
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	3 cut(s)	237, 324, 827
BspQI	GCTCTTC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	93
BspTNI	GGTCTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	378
BssMI	GATC	4 cut(s)	224, 242, 316, 832
BssSI	CACGAG	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	503
Bst4CI	ACNGT	3 cut(s)	409, 596, 704
Bst6I	CTCTTC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	15, 110, 426
BstDEI	CTNAG	2 cut(s)	387, 438
BstF5I	GGATG	2 cut(s)	716, 1137
BstFNI	CGCG	2 cut(s)	1009, 1129
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	4 cut(s)	227, 245, 319, 835
BstMAI	GTCTC	3 cut(s)	286, 398, 1101
BstMBI	GATC	4 cut(s)	224, 242, 316, 832
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 19, 167, 755, 904, 1058
BstNSI	RCATGY	1 cut(s)	800
BstSFI	CTRYAG	2 cut(s)	39, 320
BstSLI	GKGCMC	1 cut(s)	1084
BstUI	CGCG	2 cut(s)	1009, 1129
BstV1I	GCAGC	5 cut(s)	152, 812, 901, 946, 1064
BstX2I	RGATCY	3 cut(s)	224, 242, 316
BstXI	CCANNNNNNTGG	1 cut(s)	618
BstYI	RGATCY	3 cut(s)	224, 242, 316
BsuRI	GGCC	5 cut(s)	8, 537, 581, 1096, 1235
BtgZI	GCGATG	1 cut(s)	977
BtrI	CACGTC	1 cut(s)	1204
BtsCI	GGATG	2 cut(s)	716, 1137
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	3 cut(s)	15, 110, 426
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	206, 371, 733
CseI	GACGC	1 cut(s)	998
Csp6I	GTAC	4 cut(s)	94, 180, 379, 1115
CviAII	CATG	9 cut(s)	254, 562, 605, 674, 742, 797, 1028, 1102, 1160
CviQI	GTAC	4 cut(s)	94, 180, 379, 1115
DdeI	CTNAG	2 cut(s)	387, 438
DpnI	GATC	4 cut(s)	226, 244, 318, 834
DpnII	GATC	4 cut(s)	224, 242, 316, 832
DriI	GACNNNNNGTC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	1233
Eam1104I	CTCTTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	263
Ecl136II	GAGCTC	2 cut(s)	907, 1039
Eco147I	AGGCCT	1 cut(s)	1096
Eco24I	GRGCYC	2 cut(s)	909, 1041
Eco31I	GGTCTC	1 cut(s)	286
Eco47I	GGWCC	3 cut(s)	206, 371, 733
Eco53kI	GAGCTC	2 cut(s)	907, 1039
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	2 cut(s)	907, 1039
EcoRI	GAATTC	2 cut(s)	294, 455
EcoT38I	GRGCYC	2 cut(s)	909, 1041
FaeI	CATG	9 cut(s)	257, 565, 608, 677, 745, 800, 1031, 1105, 1163
FatI	CATG	9 cut(s)	253, 561, 604, 673, 741, 796, 1027, 1101, 1159
FauNDI	CATATG	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	5 cut(s)	141, 801, 915, 960, 1053
FokI	GGATG	2 cut(s)	703, 1144
FriOI	GRGCYC	2 cut(s)	909, 1041
Fsp4HI	GCNGC	5 cut(s)	141, 801, 915, 960, 1053
FspBI	CTAG	4 cut(s)	644, 654, 750, 1268
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	5 cut(s)	141, 801, 915, 960, 1053
GsaI	CCCAGC	1 cut(s)	622
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	5 cut(s)	8, 537, 581, 1096, 1235
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	998
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	9 cut(s)	257, 565, 608, 677, 745, 800, 1031, 1105, 1163
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HinfI	GANTC	9 cut(s)	78, 173, 194, 212, 434, 1004, 1156, 1224, 1253
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	3 cut(s)	413, 485, 853
Hpy166II	GTNNAC	7 cut(s)	379, 396, 508, 559, 880, 1207, 1261
Hpy188I	TCNGA	3 cut(s)	135, 193, 390
Hpy8I	GTNNAC	7 cut(s)	379, 396, 508, 559, 880, 1207, 1261
HpyAV	CCTTC	5 cut(s)	251, 256, 477, 1107, 1184
HpyCH4III	ACNGT	3 cut(s)	409, 596, 704
HpyCH4IV	ACGT	3 cut(s)	648, 876, 1203
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 19, 167, 755, 904, 1058
HpyF3I	CTNAG	2 cut(s)	387, 438
HpySE526I	ACGT	3 cut(s)	648, 876, 1203
Hsp92II	CATG	9 cut(s)	257, 565, 608, 677, 745, 800, 1031, 1105, 1163
HspAI	GCGC	1 cut(s)	106
Kpn2I	TCCGGA	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	224, 242, 316, 832
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	5 cut(s)	152, 812, 901, 946, 1064
LweI	GCATC	2 cut(s)	499, 1122
MaeI	CTAG	4 cut(s)	644, 654, 750, 1268
MaeII	ACGT	3 cut(s)	648, 876, 1203
MaeIII	GTNAC	2 cut(s)	872, 1180
MalI	GATC	4 cut(s)	226, 244, 318, 834
MboI	GATC	4 cut(s)	224, 242, 316, 832
MboII	GAAGA	5 cut(s)	73, 280, 662, 791, 1004
MflI	RGATCY	3 cut(s)	224, 242, 316
MhlI	GDGCHC	3 cut(s)	909, 1041, 1084
MluCI	AATT	6 cut(s)	69, 294, 455, 513, 856, 996
MlyI	GAGTC	3 cut(s)	167, 188, 1262
MmeI	TCCRAC	2 cut(s)	10, 711
MroI	TCCGGA	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	7 cut(s)	264, 417, 471, 512, 711, 938, 1014
MslI	CAYNNNNRTG	1 cut(s)	1066
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	209
MvnI	CGCG	2 cut(s)	1009, 1129
MwoI	GCNNNNNNNGC	6 cut(s)	14, 19, 167, 755, 904, 1058
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	4 cut(s)	224, 242, 316, 832
NlaIII	CATG	9 cut(s)	257, 565, 608, 677, 745, 800, 1031, 1105, 1163
NlaIV	GGNNCC	1 cut(s)	95
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	872
NspI	RCATGY	1 cut(s)	800
PagI	TCATGA	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	1096
PciSI	GCTCTTC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	6 cut(s)	78, 212, 434, 1004, 1156, 1224
PkrI	GCNGC	5 cut(s)	142, 802, 916, 961, 1054
PleI	GAGTC	3 cut(s)	167, 188, 1261
PpsI	GAGTC	3 cut(s)	167, 188, 1261
Psp124BI	GAGCTC	2 cut(s)	909, 1041
PspFI	CCCAGC	1 cut(s)	618
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	3 cut(s)	206, 371, 733
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	3 cut(s)	224, 242, 316
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	4 cut(s)	95, 181, 380, 1116
RsaNI	GTAC	4 cut(s)	94, 180, 379, 1115
RseI	CAYNNNNRTG	1 cut(s)	1066
SacI	GAGCTC	2 cut(s)	909, 1041
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	7 cut(s)	264, 417, 471, 512, 711, 938, 1014
SatI	GCNGC	5 cut(s)	141, 801, 915, 960, 1053
Sau3AI	GATC	4 cut(s)	224, 242, 316, 832
Sau96I	GGNCC	3 cut(s)	206, 371, 733
SchI	GAGTC	3 cut(s)	167, 188, 1262
SduI	GDGCHC	3 cut(s)	909, 1041, 1084
SfaNI	GCATC	2 cut(s)	499, 1122
SfcI	CTRYAG	2 cut(s)	39, 320
SinI	GGWCC	3 cut(s)	206, 371, 733
SmiMI	CAYNNNNRTG	1 cut(s)	1066
Sse9I	AATT	6 cut(s)	69, 294, 455, 513, 856, 996
SseBI	AGGCCT	1 cut(s)	1096
SsiI	CCGC	1 cut(s)	1129
SspI	AATATT	2 cut(s)	724, 808
SspMI	CTAG	4 cut(s)	644, 654, 750, 1268
SstI	GAGCTC	2 cut(s)	909, 1041
StuI	AGGCCT	1 cut(s)	1096
TaaI	ACNGT	3 cut(s)	409, 596, 704
TaiI	ACGT	3 cut(s)	651, 879, 1206
TaqI	TCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	69, 294, 455, 513, 856, 996
TatI	WGTACW	2 cut(s)	179, 378
TfiI	GAWTC	6 cut(s)	78, 212, 434, 1004, 1156, 1224
Tru1I	TTAA	7 cut(s)	264, 417, 471, 512, 711, 938, 1014
Tru9I	TTAA	7 cut(s)	264, 417, 471, 512, 711, 938, 1014
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	5 cut(s)	140, 800, 914, 959, 1052
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	5 cut(s)	17, 270, 662, 980, 1203
TspGWI	ACGGA	1 cut(s)	903
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	3 cut(s)	206, 371, 733
XapI	RAATTY	3 cut(s)	294, 455, 856
XbaI	TCTAGA	1 cut(s)	643
XceI	RCATGY	1 cut(s)	800
XcmI	CCANNNNNNNNNTGG	2 cut(s)	727, 1228
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	4 cut(s)	644, 654, 750, 1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.