Rorug05G0160000

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
14913834 .. 14914608
775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0160000.1

Sequence Viewer

Length: 651 bp
ATGGGTGAAAACCATTTAACAGGTCCTATCCCTCCAAATTTTGGAAGCTTAAAAGAGCTAACTTCTTTGTTCTTGAACAACAATAATCTTTCTGGTTCAATCCCGACGTCTTTAGGTGATCTGAGAAACCTTACCTCGCTCTATCTGTATGACAACAAACTTTCTGGCACCATTCCAAAAGAGATAGGGAACTTGAAATCTATGGTCGATCTAGAGTTGAGCACAAATCAACTCAGTGGTTCCATTCCTACTTCATTTGGTGACTTGACAAACCTAGAAATCTTATTTCTTAATGATAACCAACTCTCTGGTTCCATCCCCCAAGAAATAGGGAATCTCATGAAGTTGACCATAGTGGAATTGGATAATAACCAATTTTCTGGTTATTTGCCCCAAAATATTTGCCGAGGTGGATCACTGGAAAACTTTACAGTATCCACCAACTATTTGACAGACCTAAGCCACAACAACTTATATGGTGAGATCTCACCTGTCTGGGGACAATGTCCACAATTAGCAACCCTCCGAATTGCGGGGAACAACCTTACTGGCAGCATCCCACCTGAAATTGGCAATGCAACGCAAATTCAGGTGCTCGATCTTTCATCAAATCGTTTAGTCGGGGTGATTCCTAAAGAGATTGGAGATTGA

Protein Analysis

216

Amino Acids

23.32

Weight (kDa)

4.5

Isoelectric Point (pI)

21.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 10 - 97 2e-08 Leucine-rich repeat region
LRR_8 PF13855 11 - 54 4e-06 Leucine rich repeat
LRR_8 PF13855 19 - 78 4.6e-07 Leucine rich repeat
LRR_8 PF13855 70 - 126 1.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 533
AclWI GGATC 1 cut(s) 421
AcsI RAATTY 2 cut(s) 37, 585
AcyI GRCGYC 1 cut(s) 107
AfiI CCNNNNNNNGG 4 cut(s) 41, 497, 532, 569
AgsI TTSAA 3 cut(s) 76, 99, 196
AluBI AGCT 2 cut(s) 48, 58
AluI AGCT 2 cut(s) 48, 58
Alw21I GWGCWC 2 cut(s) 224, 597
AlwI GGATC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 552
ApoI RAATTY 2 cut(s) 37, 585
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 6 cut(s) 17, 128, 272, 480, 491, 637
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 167
Bbv12I GWGCWC 2 cut(s) 224, 597
BbvI GCAGC 1 cut(s) 564
BccI CCATC 1 cut(s) 323
BciVI GTATCC 1 cut(s) 445
BfaI CTAG 2 cut(s) 212, 275
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 483
BisI GCNGC 1 cut(s) 553
BlsI GCNGC 1 cut(s) 554
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 169, 241, 313
BmsI GCATC 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 497, 532, 569
Bse1I ACTGG 2 cut(s) 423, 553
Bse3DI GCAATG 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 2 cut(s) 315, 555
BseLI CCNNNNNNNGG 4 cut(s) 41, 497, 532, 569
BseMI GCAATG 1 cut(s) 580
BseMII CTCAG 2 cut(s) 113, 247
BseNI ACTGG 2 cut(s) 423, 553
BseXI GCAGC 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 2 cut(s) 224, 597
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 4 cut(s) 41, 497, 532, 569
BsmFI GGGAC 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 224, 597
Bsp143I GATC 5 cut(s) 118, 208, 413, 483, 598
BspACI CCGC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 114, 246
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 169, 241, 313
BspPI GGATC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 580
BsrI ACTGG 2 cut(s) 423, 553
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 5 cut(s) 118, 208, 413, 483, 598
BssNI GRCGYC 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 433
BstACI GRCGYC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 122, 233, 458
BstF5I GGATG 2 cut(s) 315, 555
BstKTI GATC 5 cut(s) 121, 211, 416, 486, 601
BstMBI GATC 5 cut(s) 118, 208, 413, 483, 598
BstV1I GCAGC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 483
BstXI CCANNNNNNTGG 2 cut(s) 308, 380
BstYI RGATCY 1 cut(s) 483
BsuI GTATCC 1 cut(s) 445
BtsCI GGATG 2 cut(s) 315, 555
BtsIMutI CAGTG 2 cut(s) 241, 416
CciI TCATGA 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 1 cut(s) 340
CviJI RGCY 3 cut(s) 48, 58, 462
CviKI_1 RGCY 3 cut(s) 48, 58, 462
DdeI CTNAG 3 cut(s) 122, 233, 458
DpnI GATC 5 cut(s) 120, 210, 415, 485, 600
DpnII GATC 5 cut(s) 118, 208, 413, 483, 598
Eco47I GGWCC 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 23
FaeI CATG 1 cut(s) 343
FaiI YATR 6 cut(s) 150, 203, 341, 353, 475, 477
FaqI GGGAC 1 cut(s) 513
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 526
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 2 cut(s) 302, 542
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 2 cut(s) 212, 275
GluI GCNGC 1 cut(s) 553
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 1 cut(s) 343
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 2 cut(s) 334, 628
HphI GGTGA 6 cut(s) 17, 128, 272, 480, 491, 637
Hpy166II GTNNAC 2 cut(s) 348, 509
Hpy188I TCNGA 2 cut(s) 123, 527
Hpy188III TCNNGA 4 cut(s) 73, 103, 212, 340
Hpy8I GTNNAC 2 cut(s) 348, 509
Hpy99I CGWCG 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 578
HpyF3I CTNAG 3 cut(s) 122, 233, 458
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 343
Kzo9I GATC 5 cut(s) 118, 208, 413, 483, 598
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 1 cut(s) 564
MaeI CTAG 2 cut(s) 212, 275
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 120, 210, 415, 485, 600
MboI GATC 5 cut(s) 118, 208, 413, 483, 598
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 224, 597
MluCI AATT 7 cut(s) 37, 359, 374, 512, 528, 567, 585
MnlI CCTC 4 cut(s) 42, 145, 401, 533
MseI TTAA 3 cut(s) 17, 50, 291
NdeII GATC 5 cut(s) 118, 208, 413, 483, 598
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 3 cut(s) 169, 241, 313
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 260
PagI TCATGA 1 cut(s) 339
PfeI GAWTC 2 cut(s) 334, 628
PflFI GACNNNGTC 1 cut(s) 504
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 23
PspN4I GGNNCC 3 cut(s) 169, 241, 313
PspPI GGNCC 1 cut(s) 23
PspPPI RGGWCCY 1 cut(s) 23
PsuI RGATCY 1 cut(s) 483
PsyI GACNNNGTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 17, 50, 291
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 5 cut(s) 118, 208, 413, 483, 598
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 2 cut(s) 224, 597
SfaNI GCATC 1 cut(s) 564
SinI GGWCC 1 cut(s) 23
Sse9I AATT 7 cut(s) 37, 359, 374, 512, 528, 567, 585
SsiI CCGC 1 cut(s) 533
SspI AATATT 1 cut(s) 400
SspMI CTAG 2 cut(s) 212, 275
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 207, 597
TasI AATT 7 cut(s) 37, 359, 374, 512, 528, 567, 585
TfiI GAWTC 2 cut(s) 334, 628
Tru1I TTAA 3 cut(s) 17, 50, 291
Tru9I TTAA 3 cut(s) 17, 50, 291
TscAI CASTG 2 cut(s) 241, 423
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 552
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 243, 356, 594
TspRI CASTG 2 cut(s) 241, 423
Tth111I GACNNNGTC 1 cut(s) 504
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 2 cut(s) 37, 585
XbaI TCTAGA 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 2 cut(s) 212, 275
ZraI GACGTC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.