MD05G1335500.v1.1

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
45819105 .. 45822005
2901 bp
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UTR
Exon/CDS
Intron
MD05G1335500.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGGAGTCGAAGTCGATCACGTGGGATTTGGTGATCGGCATTGCGACGGGGTTCGCATTAGGATTGTTGGTGGGAATGGTGGCGCTCTGCTGGGCCAGAATCCGTGGGAGGAGGTGTAGGCGCATACAATCACAGAAGTCCATTTCAGCCCAGAAAGAGACGGCGGCAGCCGCAGTCGCAGGCAAGGGAGTGAGTAACGGTGGTGCTGACTCCTCCAGCAGCACCATCACCGTCTCCGAGCTCTCGAAGTTCGGGCAGGACTCCCCTAGAAATTCGGAGTGGAACAACATGCCCATGTGGCTGGAGGGACTCCGGCGGAAGAGCCTCGCGTCCGCTTGCGGTATTCCCAAGTATTCTTTTAGAGATATACAGGAGGCAACTTATAACTTTGCAACAATGATTGGGCAAGGAGCTTTTGGACCGGTTTACAAAGCCCAAATGAGCACTGGTGACACTTTTGCCGTCAAAGTTCTTGCTTCAAATTCCACCCAAGGCCAGAGCGAGTTTTTGAGTGAGGTTCTGTTACTTGGAAGACTACATCACAAGAACCTTGTCAACTTGGTCGGATATATTGCAGAAGTTGAGCAACATATGCTTCTTTATAAGTACATGAGCAACGGCAGTCTGTTTTCTCATTTGCATGATGAGAACCATAAGCCATTGAGCTGGGATTTGAGAGTTAACATAGCTCTTGACATTGCGAGGGGATTGGAATACCTGCATTATGGGGCCGTTCCTCCTGTTGTGCATCGCGACATCAAGTCTTCGAACATACTGCTGGATCGATTGATGAGGGCTAGGGTTGCTGATTTCGGGCTTTCAAGACAAGAAAAGAATGAAACTCGTTCGTCAAATATCAGGGGGACATTGGGATATGTCGATCCTGAGTATGTGTTGACGAAGATGTATACGAAGAAATGCGATGTTTATAGTTTTGGAGTGCTGCTATTTGAACTTATTACAGGCAGGAATCCGCAGCAGGGTCTCATGGAATATGTGGAACTTGCTGCTATCGACACGGAGGATAAACTGCGGTGGCAAGAGATTGTGGATCCCCGCCTTGATGGAAAATTCAACGCAGAACAACTCTCTAACGTTTCTGATCTTGCGTCCAAATGCGTGAGTAGTGTCTCCAGTAACCGGCCTTCGTTGAGGGACATTGTACAGACATTATCGTTGATTTTGACGACGATGCATAACATGGGGAACCACACGCATTGCTCAACTCCTGCAACTGAAGAAACTTTCATTGAAATAGATCTGCTGGAGAATGAAGATGTTTTGATTGAACGTTGA

Protein Analysis

432

Amino Acids

47.99

Weight (kDa)

6.61

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 128 - 389 2.9e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 130 - 391 8e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 384, 603
Acc36I ACCTGC 1 cut(s) 726
AccI GTMKAC 1 cut(s) 908
AccII CGCG 2 cut(s) 329, 753
AciI CCGC 8 cut(s) 164, 171, 316, 333, 339, 974, 1033, 1057
AclI AACGTT 2 cut(s) 1095, 1291
AclWI GGATC 4 cut(s) 789, 875, 1046, 1059
AcsI RAATTY 3 cut(s) 271, 481, 1070
AcuI CTGAAG 1 cut(s) 1257
AcvI CACGTG 1 cut(s) 21
AfaI GTAC 2 cut(s) 608, 1164
AfiI CCNNNNNNNGG 2 cut(s) 980, 1140
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 6 cut(s) 480, 822, 953, 1075, 1253, 1289
AhdI GACNNNNNGTC 1 cut(s) 760
AluBI AGCT 4 cut(s) 241, 413, 666, 689
AluI AGCT 4 cut(s) 241, 413, 666, 689
Alw21I GWGCWC 2 cut(s) 243, 446
Alw26I GTCTC 4 cut(s) 152, 238, 989, 1135
AlwI GGATC 4 cut(s) 789, 875, 1046, 1059
AoxI GGCC 4 cut(s) 93, 493, 729, 1142
ApeKI GCWGC 5 cut(s) 167, 219, 943, 976, 1007
ApoI RAATTY 3 cut(s) 271, 481, 1070
AsiGI ACCGGT 1 cut(s) 421
AspLEI GCGC 2 cut(s) 85, 123
AspS9I GGNCC 3 cut(s) 93, 419, 729
AsuHPI GGTGA 3 cut(s) 43, 220, 461
AsuII TTCGAA 1 cut(s) 767
AvaII GGWCC 1 cut(s) 419
BamHI GGATCC 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 243
BarI GAAGNNNNNNTAC 2 cut(s) 1129, 1161
BbrPI CACGTG 1 cut(s) 21
BbsI GAAGAC 2 cut(s) 538, 756
Bbv12I GWGCWC 2 cut(s) 243, 446
BbvI GCAGC 5 cut(s) 179, 231, 930, 988, 994
BccI CCATC 2 cut(s) 233, 1058
BceAI ACGGC 4 cut(s) 177, 446, 634, 716
BcgI CGANNNNNNTGC 2 cut(s) 757, 791
BcoDI GTCTC 4 cut(s) 152, 238, 989, 1135
BfaI CTAG 2 cut(s) 267, 798
BfoI RGCGCY 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 726
BglI GCCNNNNNGGC 1 cut(s) 298
BglII AGATCT 1 cut(s) 1258
BisI GCNGC 7 cut(s) 165, 168, 171, 220, 944, 977, 1008
BlsI GCNGC 7 cut(s) 166, 169, 172, 221, 945, 978, 1009
Bme18I GGWCC 1 cut(s) 419
BmeRI GACNNNNNGTC 1 cut(s) 760
BmgT120I GGNCC 3 cut(s) 93, 419, 729
BmiI GGNNCC 3 cut(s) 730, 1053, 1208
BmsI GCATC 2 cut(s) 757, 1182
BpiI GAAGAC 2 cut(s) 538, 756
BpmI CTGGAG 4 cut(s) 199, 323, 1117, 1286
Bpu14I TTCGAA 1 cut(s) 767
Bsa29I ATCGAT 1 cut(s) 784
BsaAI YACGTR 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 989
BsaJI CCNNGG 2 cut(s) 103, 490
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 3 cut(s) 26, 100, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 980, 1140
Bse118I RCCGGY 2 cut(s) 421, 1140
Bse1I ACTGG 2 cut(s) 451, 1134
Bse3DI GCAATG 3 cut(s) 39, 696, 1216
BseCI ATCGAT 1 cut(s) 784
BseDI CCNNGG 2 cut(s) 103, 490
BseLI CCNNNNNNNGG 2 cut(s) 980, 1140
BseMI GCAATG 3 cut(s) 39, 696, 1216
BseMII CTCAG 1 cut(s) 876
BseNI ACTGG 2 cut(s) 451, 1134
BseRI GAGGAG 2 cut(s) 124, 202
BseXI GCAGC 5 cut(s) 179, 231, 930, 988, 994
BseYI CCCAGC 2 cut(s) 90, 666
Bsh1236I CGCG 2 cut(s) 329, 753
BshFI GGCC 4 cut(s) 95, 495, 731, 1144
BshTI ACCGGT 1 cut(s) 421
BshVI ATCGAT 1 cut(s) 784
BsiHKAI GWGCWC 2 cut(s) 243, 446
BsiSI CCGG 3 cut(s) 313, 422, 1141
BslFI GGGAC 3 cut(s) 321, 877, 1169
BslI CCNNNNNNNGG 2 cut(s) 980, 1140
BsmAI GTCTC 4 cut(s) 152, 238, 989, 1135
BsmBI CGTCTC 2 cut(s) 152, 238
BsmFI GGGAC 3 cut(s) 321, 877, 1169
BsnI GGCC 4 cut(s) 95, 495, 731, 1144
Bso31I GGTCTC 1 cut(s) 989
Bsp119I TTCGAA 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 243, 446
Bsp1407I TGTACA 1 cut(s) 1162
Bsp143I GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
Bsp68I TCGCGA 1 cut(s) 753
BspACI CCGC 8 cut(s) 164, 171, 316, 333, 339, 974, 1033, 1057
BspANI GGCC 4 cut(s) 95, 495, 731, 1144
BspCNI CTCAG 1 cut(s) 877
BspDI ATCGAT 1 cut(s) 784
BspFNI CGCG 2 cut(s) 329, 753
BspLI GGNNCC 3 cut(s) 730, 1053, 1208
BspMI ACCTGC 1 cut(s) 726
BspPI GGATC 4 cut(s) 789, 875, 1046, 1059
BspQI GCTCTTC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 989
BsrDI GCAATG 3 cut(s) 39, 696, 1216
BsrFI RCCGGY 2 cut(s) 421, 1140
BsrGI TGTACA 1 cut(s) 1162
BsrI ACTGG 2 cut(s) 451, 1134
BssAI RCCGGY 2 cut(s) 421, 1140
BssECI CCNNGG 2 cut(s) 103, 490
BssMI GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
BssNAI GTATAC 1 cut(s) 909
BssT1I CCWWGG 1 cut(s) 490
Bst1107I GTATAC 1 cut(s) 909
Bst4CI ACNGT 2 cut(s) 200, 232
Bst6I CTCTTC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 592
BstAUI TGTACA 1 cut(s) 1162
BstBAI YACGTR 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 767
BstC8I GCNNGC 2 cut(s) 181, 337
BstDEI CTNAG 1 cut(s) 885
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 2 cut(s) 329, 753
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 2 cut(s) 85, 123
BstKTI GATC 7 cut(s) 18, 36, 784, 883, 1054, 1105, 1261
BstMAI GTCTC 4 cut(s) 152, 238, 989, 1135
BstMBI GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
BstMWI GCNNNNNNNGC 5 cut(s) 170, 176, 298, 592, 803
BstNSI RCATGY 1 cut(s) 292
BstUI CGCG 2 cut(s) 329, 753
BstV1I GCAGC 5 cut(s) 179, 231, 930, 988, 994
BstV2I GAAGAC 2 cut(s) 538, 756
BstX2I RGATCY 2 cut(s) 1051, 1258
BstXI CCANNNNNNTGG 2 cut(s) 301, 666
BstYI RGATCY 2 cut(s) 1051, 1258
BstZ17I GTATAC 1 cut(s) 909
Bsu15I ATCGAT 1 cut(s) 784
BsuRI GGCC 4 cut(s) 95, 495, 731, 1144
BsuTUI ATCGAT 1 cut(s) 784
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 2 cut(s) 734, 936
BtsIMutI CAGTG 1 cut(s) 444
BtuMI TCGCGA 1 cut(s) 753
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 2 cut(s) 181, 337
CfoI GCGC 2 cut(s) 85, 123
Cfr10I RCCGGY 2 cut(s) 421, 1140
Cfr13I GGNCC 3 cut(s) 93, 419, 729
ClaI ATCGAT 1 cut(s) 784
CseI GACGC 2 cut(s) 318, 1098
Csp6I GTAC 2 cut(s) 607, 1163
CspAI ACCGGT 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 1199, 1234
CviAII CATG 6 cut(s) 289, 295, 610, 641, 988, 1201
CviQI GTAC 2 cut(s) 607, 1163
DdeI CTNAG 1 cut(s) 885
DpnI GATC 7 cut(s) 17, 35, 783, 882, 1053, 1104, 1260
DpnII GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
DriI GACNNNNNGTC 1 cut(s) 760
Eam1104I CTCTTC 1 cut(s) 314
Eam1105I GACNNNNNGTC 1 cut(s) 760
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 989
Eco47I GGWCC 1 cut(s) 419
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 1257
Eco72I CACGTG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 1197
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 490
Esp3I CGTCTC 2 cut(s) 152, 238
FaeI CATG 6 cut(s) 292, 298, 613, 644, 991, 1204
FaqI GGGAC 3 cut(s) 321, 877, 1169
FatI CATG 6 cut(s) 288, 294, 609, 640, 987, 1200
FauI CCCGC 1 cut(s) 1064
FauNDI CATATG 1 cut(s) 591
FblI GTMKAC 1 cut(s) 908
Fnu4HI GCNGC 7 cut(s) 165, 168, 171, 220, 944, 977, 1008
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 7 cut(s) 165, 168, 171, 220, 944, 977, 1008
FspBI CTAG 2 cut(s) 267, 798
GlaI GCGC 2 cut(s) 84, 122
GluI GCNGC 7 cut(s) 165, 168, 171, 220, 944, 977, 1008
GsaI CCCAGC 2 cut(s) 94, 670
GsuI CTGGAG 4 cut(s) 199, 323, 1117, 1286
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 4 cut(s) 95, 495, 731, 1144
HapII CCGG 3 cut(s) 313, 422, 1141
HgaI GACGC 2 cut(s) 318, 1098
HhaI GCGC 2 cut(s) 85, 123
Hin1II CATG 6 cut(s) 292, 298, 613, 644, 991, 1204
Hin6I GCGC 2 cut(s) 83, 121
HinP1I GCGC 2 cut(s) 83, 121
HincII GTYRAC 3 cut(s) 556, 682, 897
HindII GTYRAC 3 cut(s) 556, 682, 897
HinfI GANTC 6 cut(s) 5, 99, 209, 260, 309, 970
HpaI GTTAAC 1 cut(s) 682
HpaII CCGG 3 cut(s) 313, 422, 1141
HphI GGTGA 3 cut(s) 43, 220, 461
Hpy166II GTNNAC 5 cut(s) 427, 556, 682, 897, 909
Hpy188I TCNGA 4 cut(s) 238, 277, 566, 1102
Hpy188III TCNNGA 5 cut(s) 244, 692, 752, 822, 884
Hpy8I GTNNAC 5 cut(s) 427, 556, 682, 897, 909
Hpy99I CGWCG 2 cut(s) 49, 1192
HpyAV CCTTC 1 cut(s) 1155
HpyCH4III ACNGT 2 cut(s) 200, 232
HpyCH4IV ACGT 3 cut(s) 20, 1095, 1291
HpyCH4V TGCA 7 cut(s) 392, 575, 640, 721, 748, 1195, 1232
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 176, 298, 592, 803
HpyF3I CTNAG 1 cut(s) 885
HpySE526I ACGT 3 cut(s) 20, 1095, 1291
Hsp92II CATG 6 cut(s) 292, 298, 613, 644, 991, 1204
HspAI GCGC 2 cut(s) 83, 121
KspAI GTTAAC 1 cut(s) 682
Kzo9I GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 5 cut(s) 179, 231, 930, 988, 994
LweI GCATC 2 cut(s) 757, 1182
MaeI CTAG 2 cut(s) 267, 798
MaeII ACGT 3 cut(s) 20, 1095, 1291
MaeIII GTNAC 4 cut(s) 194, 449, 522, 1136
MalI GATC 7 cut(s) 17, 35, 783, 882, 1053, 1104, 1260
MboI GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
MboII GAAGA 7 cut(s) 331, 543, 756, 913, 925, 1250, 1286
MflI RGATCY 2 cut(s) 1051, 1258
MhlI GDGCHC 2 cut(s) 243, 446
MluCI AATT 3 cut(s) 271, 481, 1070
MlyI GAGTC 4 cut(s) 14, 203, 254, 303
MmeI TCCRAC 1 cut(s) 544
Mph1103I ATGCAT 1 cut(s) 1197
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 2 cut(s) 293, 639
MspI CCGG 3 cut(s) 313, 422, 1141
MvnI CGCG 2 cut(s) 329, 753
MwoI GCNNNNNNNGC 5 cut(s) 170, 176, 298, 592, 803
NdeI CATATG 1 cut(s) 591
NdeII GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
NlaIII CATG 6 cut(s) 292, 298, 613, 644, 991, 1204
NlaIV GGNNCC 3 cut(s) 730, 1053, 1208
NmuCI GTSAC 1 cut(s) 449
NruI TCGCGA 1 cut(s) 753
NsiI ATGCAT 1 cut(s) 1197
NspI RCATGY 1 cut(s) 292
NspV TTCGAA 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 99, 970
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 7 cut(s) 166, 169, 172, 221, 945, 978, 1009
PleI GAGTC 4 cut(s) 13, 203, 254, 303
PmaCI CACGTG 1 cut(s) 21
PmlI CACGTG 1 cut(s) 21
PpsI GAGTC 4 cut(s) 13, 203, 254, 303
Ppu21I YACGTR 1 cut(s) 21
PsiI TTATAA 2 cut(s) 384, 603
Psp124BI GAGCTC 1 cut(s) 243
Psp1406I AACGTT 2 cut(s) 1095, 1291
PspCI CACGTG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 90, 666
PspN4I GGNNCC 3 cut(s) 730, 1053, 1208
PspPI GGNCC 3 cut(s) 93, 419, 729
PsuI RGATCY 2 cut(s) 1051, 1258
RruI TCGCGA 1 cut(s) 753
RsaI GTAC 2 cut(s) 608, 1164
RsaNI GTAC 2 cut(s) 607, 1163
RseI CAYNNNNRTG 2 cut(s) 293, 639
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 7 cut(s) 165, 168, 171, 220, 944, 977, 1008
Sau3AI GATC 7 cut(s) 15, 33, 781, 880, 1051, 1102, 1258
Sau96I GGNCC 3 cut(s) 93, 419, 729
SchI GAGTC 4 cut(s) 14, 203, 254, 303
SduI GDGCHC 2 cut(s) 243, 446
SfaNI GCATC 2 cut(s) 757, 1182
SfuI TTCGAA 1 cut(s) 767
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 2 cut(s) 293, 639
Sse9I AATT 3 cut(s) 271, 481, 1070
SsiI CCGC 8 cut(s) 164, 171, 316, 333, 339, 974, 1033, 1057
SspMI CTAG 2 cut(s) 267, 798
SstI GAGCTC 1 cut(s) 243
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 2 cut(s) 200, 232
TaiI ACGT 3 cut(s) 23, 1098, 1294
TaqI TCGA 7 cut(s) 8, 14, 245, 767, 784, 879, 1014
TasI AATT 3 cut(s) 271, 481, 1070
TatI WGTACW 2 cut(s) 606, 1162
TauI GCSGC 2 cut(s) 167, 173
TfiI GAWTC 2 cut(s) 99, 970
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 5 cut(s) 167, 219, 943, 976, 1007
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 3 cut(s) 852, 1237, 1287
TspGWI ACGGA 2 cut(s) 92, 1034
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 3 cut(s) 271, 481, 1070
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmiI GTMKAC 1 cut(s) 908
XspI CTAG 2 cut(s) 267, 798
Zsp2I ATGCAT 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.