RchiOBHm_Chr5g0004621

leucine-rich repeat receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
3003816 .. 3006520
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28585

Sequence Viewer

Length: 1230 bp
ATGGAAGGGTTGGCAGTTGCATGGGGAATGCTGATAGGCTCCGTTATTGGGTTCTTACTGGCAGTGTCCGTAGTGATTGGAGCTCTCGTCTGCCTCAAATGCCGGGCAAACCTCCGTACGGGTACGAGTGTGTCAGCGTCGCAGAGGATCACAGCCGCCAGCGCCGCCGAGTCGGACTCCAACCTCGGCCAAGACTCACCGCGAAGTTCGGAGTGGAGCAATATGTCCATGTGGCTCGAAGCCCTTAAGAAAAAGACCGTCGTCTCCGCTTGTGGTATACCCAAGTATAATTACGGAGACATAAAGAAAGCGACGTGTGACTTCACGACGGCTATTGGGCAAGGGGCGTTTGGACCTGTTTTCAAGGCCCAAATGAGCACCGGCGACACTTTTGCTGTTAAAGTTCTTGCTGCGGATTCCAGGCAAGGCCAGCATGAGTTTTTAGCTGAGGTTTTGTTACTTGCAAGATTACACCACAACAACCTTGTGAACTTGATGGGATATGCTGCCGAAATGGAGCAGCTTATGCTTCTTTATAATTACATGAGCAATGGCAGTCTTGATTCTCATTTACATGATGATAATCAGGTGCCATTGAGCTGGGATTTGAGGGTTGCAATAGCTCTTGATGTTGCAAGGGGATTGGAATACCTACATTACGGGGCTGTTCCTCCTGTTGTCCACCGCGACATCAAGTCTTCCAACATACTGTTGGACCAGTCAATGAAGGCTAAGGTTGCTGATTTCGGGCTTTCAAGACATGACAAGATTAAATCACGTTCATCTGATATCAGGGGAACTTTTGGATATGTTGATCCTGAGTATGTGGTTACAAGAATCTTTACCAAGAAATGTGATGTTTATAGTTTTGGTGTACTGCTCTTTGAACTAATTACAGGCAGGAATCCACAGCAAGGTCTCATGGAATATGTGGAATTTGCCACAGTGGACGCGGCAGGTAAACTTGGGTGGGAAGAGATTGTGGACATTCATCTTAATGGAGAATTTGATATACAAGAACTAGCTCAGGTTGCTGATCTTGCTTACAGATGTGTTAGTGATGTCTCCAGAAAACGGCCTTCTATGAGGAACATAGTGCAGACATTATCAAGCATTTTGATGAAGAGACGTAGCGCAAAGAAACCCCAGCAAACCCCAACTACAGCAGCTGAAGAAACTTACATTGAAATAGATCTTATAGAGAAGCAGGATGCTTTAATTGAACGCTGA

Protein Analysis

409

Amino Acids

45.14

Weight (kDa)

6.17

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 108 - 369 1.1e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 110 - 367 3.2e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 947
AccB1I GGYRCC 1 cut(s) 589
AccI GTMKAC 1 cut(s) 277
AccII CGCG 3 cut(s) 202, 687, 953
AciI CCGC 7 cut(s) 156, 165, 200, 267, 413, 685, 953
AclWI GGATC 2 cut(s) 155, 809
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 2 cut(s) 935, 1004
AcuI CTGAAG 1 cut(s) 1191
AfaI GTAC 3 cut(s) 118, 124, 876
AfiI CCNNNNNNNGG 4 cut(s) 48, 118, 914, 1074
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 314
AgsI TTSAA 5 cut(s) 364, 756, 887, 1187, 1223
AhdI GACNNNNNGTC 1 cut(s) 694
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 7 cut(s) 83, 446, 523, 600, 623, 1025, 1169
AluI AGCT 7 cut(s) 83, 446, 523, 600, 623, 1025, 1169
Alw21I GWGCWC 2 cut(s) 85, 380
Alw26I GTCTC 5 cut(s) 268, 291, 923, 1069, 1120
AlwI GGATC 2 cut(s) 155, 809
AlwNI CAGNNNCTG 1 cut(s) 1169
AoxI GGCC 4 cut(s) 187, 366, 427, 1076
ApeKI GCWGC 4 cut(s) 410, 506, 520, 1166
ApoI RAATTY 2 cut(s) 935, 1004
AspLEI GCGC 2 cut(s) 164, 1136
AspS9I GGNCC 3 cut(s) 353, 367, 715
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 189
AvaII GGWCC 2 cut(s) 353, 715
BaeI ACNNNNGTAYC 2 cut(s) 114, 147
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 85, 380
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 4 cut(s) 397, 493, 532, 1178
BccI CCATC 1 cut(s) 490
BceAI ACGGC 2 cut(s) 345, 1091
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 1 cut(s) 421
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 5 cut(s) 268, 291, 923, 1069, 1120
BfaI CTAG 1 cut(s) 1022
BfmI CTRYAG 1 cut(s) 1161
BfoI RGCGCY 1 cut(s) 165
BfrI CTTAAG 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 947
BglII AGATCT 1 cut(s) 1192
BisI GCNGC 7 cut(s) 156, 165, 411, 507, 521, 954, 1167
BlsI GCNGC 7 cut(s) 157, 166, 412, 508, 522, 955, 1168
Bme1390I CCNGG 2 cut(s) 104, 421
Bme18I GGWCC 2 cut(s) 353, 715
BmeRI GACNNNNNGTC 1 cut(s) 694
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 353, 367, 715
BmiI GGNNCC 2 cut(s) 40, 591
BmrFI CCNGG 2 cut(s) 104, 421
BmsI GCATC 1 cut(s) 1201
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 690
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 1051
Bpu10I CCTNAGC 3 cut(s) 447, 732, 1026
BpuMI CCSGG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 118, 914, 1074
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 2 cut(s) 63, 718
Bse3DI GCAATG 1 cut(s) 556
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 1216
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 4 cut(s) 48, 118, 914, 1074
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 3 cut(s) 438, 810, 1040
BseNI ACTGG 2 cut(s) 63, 718
BseXI GCAGC 4 cut(s) 397, 493, 532, 1178
BseYI CCCAGC 2 cut(s) 600, 1146
BsgI GTGCAG 1 cut(s) 1118
Bsh1236I CGCG 3 cut(s) 202, 687, 953
BshFI GGCC 4 cut(s) 189, 368, 429, 1078
BshNI GGYRCC 1 cut(s) 589
BsiHKAI GWGCWC 2 cut(s) 85, 380
BsiSI CCGG 2 cut(s) 103, 381
BsiWI CGTACG 1 cut(s) 116
BslI CCNNNNNNNGG 4 cut(s) 48, 118, 914, 1074
BsmAI GTCTC 5 cut(s) 268, 291, 923, 1069, 1120
BsmBI CGTCTC 2 cut(s) 268, 1120
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 4 cut(s) 189, 368, 429, 1078
Bso31I GGTCTC 1 cut(s) 923
Bsp1286I GDGCHC 2 cut(s) 85, 380
Bsp143I GATC 4 cut(s) 147, 814, 1036, 1192
BspACI CCGC 7 cut(s) 156, 165, 200, 267, 413, 685, 953
BspANI GGCC 4 cut(s) 189, 368, 429, 1078
BspCNI CTCAG 3 cut(s) 439, 811, 1039
BspFNI CGCG 3 cut(s) 202, 687, 953
BspLI GGNNCC 2 cut(s) 40, 591
BspMI ACCTGC 1 cut(s) 947
BspPI GGATC 2 cut(s) 155, 809
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 380
BsrI ACTGG 2 cut(s) 63, 718
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 4 cut(s) 147, 814, 1036, 1192
BssNAI GTATAC 1 cut(s) 278
Bst1107I GTATAC 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 3 cut(s) 259, 711, 946
Bst6I CTCTTC 2 cut(s) 969, 1118
BstAFI CTTAAG 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 160, 431
BstDEI CTNAG 4 cut(s) 447, 732, 819, 1026
BstF5I GGATG 1 cut(s) 1216
BstFNI CGCG 3 cut(s) 202, 687, 953
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 164, 1136
BstKTI GATC 4 cut(s) 150, 817, 1039, 1195
BstMAI GTCTC 5 cut(s) 268, 291, 923, 1069, 1120
BstMBI GATC 4 cut(s) 147, 814, 1036, 1192
BstMWI GCNNNNNNNGC 8 cut(s) 99, 161, 164, 430, 526, 737, 1031, 1040
BstNI CCWGG 1 cut(s) 421
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 102, 419
BstSFI CTRYAG 1 cut(s) 1161
BstUI CGCG 3 cut(s) 202, 687, 953
BstV1I GCAGC 4 cut(s) 397, 493, 532, 1178
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 1192
BstXI CCANNNNNNTGG 1 cut(s) 600
BstYI RGATCY 1 cut(s) 1192
BstZ17I GTATAC 1 cut(s) 278
BsuRI GGCC 4 cut(s) 189, 368, 429, 1078
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 1216
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 951
BveI ACCTGC 1 cut(s) 947
Cac8I GCNNGC 2 cut(s) 160, 431
CaiI CAGNNNCTG 1 cut(s) 1169
CfoI GCGC 2 cut(s) 164, 1136
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 3 cut(s) 353, 367, 715
CseI GACGC 2 cut(s) 126, 959
Csp6I GTAC 3 cut(s) 117, 123, 875
CviAII CATG 7 cut(s) 21, 229, 434, 544, 575, 761, 922
CviQI GTAC 3 cut(s) 117, 123, 875
DdeI CTNAG 4 cut(s) 447, 732, 819, 1026
DpnI GATC 4 cut(s) 149, 816, 1038, 1194
DpnII GATC 4 cut(s) 147, 814, 1036, 1192
DriI GACNNNNNGTC 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 969, 1118
Eam1105I GACNNNNNGTC 1 cut(s) 694
EarI CTCTTC 2 cut(s) 969, 1118
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 2 cut(s) 353, 715
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 1191
EcoICRI GAGCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 419
EcoRV GATATC 1 cut(s) 790
EcoT38I GRGCYC 1 cut(s) 85
Esp3I CGTCTC 2 cut(s) 268, 1120
FaeI CATG 7 cut(s) 24, 232, 437, 547, 578, 764, 925
FatI CATG 7 cut(s) 20, 228, 433, 543, 574, 760, 921
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 7 cut(s) 156, 165, 411, 507, 521, 954, 1167
FokI GGATG 1 cut(s) 1223
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 7 cut(s) 156, 165, 411, 507, 521, 954, 1167
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 2 cut(s) 163, 1135
GluI GCNGC 7 cut(s) 156, 165, 411, 507, 521, 954, 1167
GsaI CCCAGC 2 cut(s) 604, 1150
GsuI CTGGAG 1 cut(s) 1051
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 4 cut(s) 189, 368, 429, 1078
HapII CCGG 2 cut(s) 103, 381
HgaI GACGC 2 cut(s) 126, 959
HhaI GCGC 2 cut(s) 164, 1136
Hin1II CATG 7 cut(s) 24, 232, 437, 547, 578, 764, 925
Hin6I GCGC 2 cut(s) 162, 1134
HinP1I GCGC 2 cut(s) 162, 1134
HinfI GANTC 7 cut(s) 170, 176, 194, 416, 563, 837, 904
HpaII CCGG 2 cut(s) 103, 381
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 7 cut(s) 278, 490, 682, 875, 949, 962, 985
Hpy188I TCNGA 3 cut(s) 175, 211, 787
Hpy188III TCNNGA 6 cut(s) 325, 560, 626, 756, 818, 1068
Hpy8I GTNNAC 7 cut(s) 278, 490, 682, 875, 949, 962, 985
Hpy99I CGWCG 4 cut(s) 142, 263, 316, 331
HpyAV CCTTC 2 cut(s) 721, 1089
HpyCH4III ACNGT 3 cut(s) 259, 711, 946
HpyCH4IV ACGT 3 cut(s) 314, 778, 1129
HpyCH4V TGCA 5 cut(s) 20, 464, 617, 635, 1099
HpyF10VI GCNNNNNNNGC 8 cut(s) 99, 161, 164, 430, 526, 737, 1031, 1040
HpyF3I CTNAG 4 cut(s) 447, 732, 819, 1026
HpySE526I ACGT 3 cut(s) 314, 778, 1129
Hsp92II CATG 7 cut(s) 24, 232, 437, 547, 578, 764, 925
HspAI GCGC 2 cut(s) 162, 1134
Kzo9I GATC 4 cut(s) 147, 814, 1036, 1192
LmnI GCTCC 4 cut(s) 44, 80, 216, 517
Lsp1109I GCAGC 4 cut(s) 397, 493, 532, 1178
LweI GCATC 1 cut(s) 1201
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 3 cut(s) 314, 778, 1129
MaeIII GTNAC 3 cut(s) 317, 456, 829
MalI GATC 4 cut(s) 149, 816, 1038, 1194
MboI GATC 4 cut(s) 147, 814, 1036, 1192
MboII GAAGA 4 cut(s) 690, 986, 1135, 1184
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 2 cut(s) 85, 380
MluCI AATT 6 cut(s) 289, 538, 891, 935, 1004, 1218
MlyI GAGTC 3 cut(s) 170, 179, 188
MmeI TCCRAC 4 cut(s) 153, 204, 693, 726
MnlI CCTC 8 cut(s) 104, 122, 138, 194, 442, 603, 681, 1080
MseI TTAA 5 cut(s) 246, 399, 771, 996, 1217
MslI CAYNNNNRTG 3 cut(s) 573, 996, 1118
MspA1I CMGCKG 1 cut(s) 1169
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 2 cut(s) 103, 381
MspR9I CCNGG 2 cut(s) 104, 421
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 3 cut(s) 202, 687, 953
MwoI GCNNNNNNNGC 8 cut(s) 99, 161, 164, 430, 526, 737, 1031, 1040
NciI CCSGG 1 cut(s) 104
NdeII GATC 4 cut(s) 147, 814, 1036, 1192
NlaIII CATG 7 cut(s) 24, 232, 437, 547, 578, 764, 925
NlaIV GGNNCC 2 cut(s) 40, 591
NmeAIII GCCGAG 2 cut(s) 165, 193
NmuCI GTSAC 1 cut(s) 317
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 4 cut(s) 416, 563, 837, 904
Pfl23II CGTACG 1 cut(s) 116
PkrI GCNGC 7 cut(s) 157, 166, 412, 508, 522, 955, 1168
PleI GAGTC 3 cut(s) 170, 178, 188
PpsI GAGTC 3 cut(s) 170, 178, 188
PshAI GACNNNNGTC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 419
PspFI CCCAGC 2 cut(s) 600, 1146
PspGI CCWGG 1 cut(s) 419
PspLI CGTACG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 40, 591
PspPI GGNCC 3 cut(s) 353, 367, 715
PstNI CAGNNNCTG 1 cut(s) 1169
PsuI RGATCY 1 cut(s) 1192
PvuII CAGCTG 1 cut(s) 1169
RsaI GTAC 3 cut(s) 118, 124, 876
RsaNI GTAC 3 cut(s) 117, 123, 875
RseI CAYNNNNRTG 3 cut(s) 573, 996, 1118
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 5 cut(s) 246, 399, 771, 996, 1217
SatI GCNGC 7 cut(s) 156, 165, 411, 507, 521, 954, 1167
Sau3AI GATC 4 cut(s) 147, 814, 1036, 1192
Sau96I GGNCC 3 cut(s) 353, 367, 715
SchI GAGTC 3 cut(s) 170, 179, 188
ScrFI CCNGG 2 cut(s) 104, 421
SduI GDGCHC 2 cut(s) 85, 380
SfaNI GCATC 1 cut(s) 1201
SfcI CTRYAG 1 cut(s) 1161
SgrAI CRCCGGYG 1 cut(s) 380
SinI GGWCC 2 cut(s) 353, 715
SmiMI CAYNNNNRTG 3 cut(s) 573, 996, 1118
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 6 cut(s) 289, 538, 891, 935, 1004, 1218
SsiI CCGC 7 cut(s) 156, 165, 200, 267, 413, 685, 953
SspMI CTAG 1 cut(s) 1022
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 102, 419
TaaI ACNGT 3 cut(s) 259, 711, 946
TaiI ACGT 3 cut(s) 317, 781, 1132
TaqI TCGA 1 cut(s) 237
TasI AATT 6 cut(s) 289, 538, 891, 935, 1004, 1218
TatI WGTACW 1 cut(s) 874
TauI GCSGC 3 cut(s) 158, 167, 956
TfiI GAWTC 4 cut(s) 416, 563, 837, 904
Tru1I TTAA 5 cut(s) 246, 399, 771, 996, 1217
Tru9I TTAA 5 cut(s) 246, 399, 771, 996, 1217
TscAI CASTG 2 cut(s) 69, 951
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 4 cut(s) 410, 506, 520, 1166
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 740, 771, 980, 1136
TspGWI ACGGA 4 cut(s) 31, 58, 104, 309
TspRI CASTG 2 cut(s) 69, 951
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 353, 715
XapI RAATTY 2 cut(s) 935, 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 709
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.