Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453033.1

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 915

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453033.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 577 bp

atggaagggttggcagttgcatggggaatgctgataggctccgttattgggttcttactggcagtgtccgtagtgattggagctctcgtctgcctcaaatgccggacaaacctccgtacggttacgagtatgtcagcgtcgcagaggatcacagcagccagcgccgcccagtcggactccaacctcggccaagactcaccgcgaagttcggagtggagcaacatgtccatatggctcgaggcccttaagaaaaagaccgtcgtctccgcttgtggtatacccaagtataattacggagacataaagaaagcgacgtgtgacttcacgacggctattgggcaaggggcgtttggacctgtttacaaggcccaaatgggcaccggcgacacttttgctgttaaagttcttgctgcggattccaggcaaggccagcatgagtttttagctgaggttttgttacttgcaagattacaccacaacaaccttgtgaacttgatgggatacgctgccgaaatggagcagcttatgcttctttataattacatgagcaatggcagtcttgattctcatttacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

192

Amino Acids

20.66

Weight (kDa)

7.7

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	1 cut(s)	202
AciI	CCGC	4 cut(s)	165, 200, 267, 413
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	48, 118
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	2 cut(s)	222, 314
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	3 cut(s)	83, 446, 523
AluI	AGCT	3 cut(s)	83, 446, 523
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	268, 291
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	187, 240, 366, 427
ApeKI	GCWGC	4 cut(s)	155, 410, 506, 520
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	241, 353, 367
AsuHPI	GGTGA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	167, 397, 493, 532
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	494
BcoDI	GTCTC	2 cut(s)	268, 291
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	494
BisI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
BlsI	GCNGC	5 cut(s)	157, 166, 412, 508, 522
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	3 cut(s)	241, 353, 367
BmiI	GGNNCC	2 cut(s)	40, 379
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
BoxI	GACNNNNGTC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 118
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	63, 169
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	48, 118
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	63, 169
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	4 cut(s)	167, 397, 493, 532
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	4 cut(s)	189, 242, 368, 429
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	103, 381
BsiWI	CGTACG	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	48, 118
BsmAI	GTCTC	2 cut(s)	268, 291
BsmBI	CGTCTC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	189, 242, 368, 429
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	85, 380
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	165, 200, 267, 413
BspANI	GGCC	4 cut(s)	189, 242, 368, 429
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	40, 379
BspPI	GGATC	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	377
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	63, 169
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	147
BssNAI	GTATAC	1 cut(s)	278
Bst1107I	GTATAC	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	121, 259
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstC8I	GCNNGC	2 cut(s)	160, 431
BstDEI	CTNAG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	268, 291
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 161, 164, 430, 526
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	226
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	4 cut(s)	167, 397, 493, 532
BstZ17I	GTATAC	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	4 cut(s)	189, 242, 368, 429
BtrI	CACGTC	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	160, 431
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	3 cut(s)	241, 353, 367
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	5 cut(s)	21, 223, 434, 544, 575
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	4 cut(s)	24, 226, 437, 547
FatI	CATG	4 cut(s)	20, 222, 433, 543
FauNDI	CATATG	1 cut(s)	230
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	189, 242, 368, 429
HapII	CCGG	2 cut(s)	103, 381
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	4 cut(s)	24, 226, 437, 547
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	176, 194, 416, 563
HpaII	CCGG	2 cut(s)	103, 381
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	3 cut(s)	278, 361, 490
Hpy188I	TCNGA	2 cut(s)	175, 211
Hpy188III	TCNNGA	2 cut(s)	325, 560
Hpy8I	GTNNAC	3 cut(s)	278, 361, 490
Hpy99I	CGWCG	4 cut(s)	142, 263, 316, 331
HpyCH4III	ACNGT	2 cut(s)	121, 259
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	20, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 161, 164, 430, 526
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	24, 226, 437, 547
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	4 cut(s)	44, 80, 216, 517
LpnPI	CCDG	9 cut(s)	44, 116, 172, 182, 369, 394, 406, 433, 443
Lsp1109I	GCAGC	4 cut(s)	167, 397, 493, 532
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	121, 317, 456
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	85, 380
MluCI	AATT	2 cut(s)	289, 538
MlyI	GAGTC	2 cut(s)	170, 188
MmeI	TCCRAC	2 cut(s)	153, 204
MnlI	CCTC	6 cut(s)	104, 122, 138, 194, 232, 442
MseI	TTAA	2 cut(s)	246, 399
MslI	CAYNNNNRTG	1 cut(s)	573
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	2 cut(s)	103, 381
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	5 cut(s)	99, 161, 164, 430, 526
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	4 cut(s)	24, 226, 437, 547
NlaIV	GGNNCC	2 cut(s)	40, 379
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	236
PciI	ACATGT	1 cut(s)	222
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	416, 563
Pfl23II	CGTACG	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	157, 166, 412, 508, 522
PleI	GAGTC	2 cut(s)	170, 188
PpsI	GAGTC	2 cut(s)	170, 188
PscI	ACATGT	1 cut(s)	222
PshAI	GACNNNNGTC	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspLI	CGTACG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	40, 379
PspPI	GGNCC	3 cut(s)	241, 353, 367
PspXI	VCTCGAGB	1 cut(s)	236
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	246, 399
SatI	GCNGC	5 cut(s)	156, 165, 411, 507, 521
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	3 cut(s)	241, 353, 367
SchI	GAGTC	2 cut(s)	170, 188
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	85, 380
SetI	ASST	9 cut(s)	85, 114, 186, 317, 358, 448, 453, 486, 525
Sfr274I	CTCGAG	1 cut(s)	236
SgrAI	CRCCGGYG	1 cut(s)	380
SinI	GGWCC	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	236, 245
SmoI	CTYRAG	2 cut(s)	236, 245
Sse9I	AATT	2 cut(s)	289, 538
SsiI	CCGC	4 cut(s)	165, 200, 267, 413
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	121, 259
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	289, 538
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	416, 563
Tru1I	TTAA	2 cut(s)	246, 399
Tru9I	TTAA	2 cut(s)	246, 399
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	4 cut(s)	155, 410, 506, 520
Tsp45I	GTSAC	1 cut(s)	317
TspGWI	ACGGA	4 cut(s)	31, 58, 104, 309
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	353
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.