Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

91900842 .. 91901610

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAGGGTTGGCAGTTGCATGGGGAATGCTGATAGGCTCCGTTATTGGGTTCTTACTGGCAGTGTCCGTAGTGATTGGAGTTCTCGTCTGCCTCAAATGCCGGACAAACCTCCGTACGGGTACGAGTGTGTCAGCGTCGCAGAGGATCACAGCCGCCAGCGCCTCGGACTCCAACCTCGGCCAAGACTCACCGCGAAGTTCGGAGTGGAGCAACATGTCCATGTGGCTCGAGGCCCTTAAGAAAAAGACCGTCGTCTCCGCTTGTGGTATACCCAAGTATAATTACGGAGACATAAAGAAAGCGACGTGTGACTTCACGACGGCTATTGGGCAAGGGGCGTTTGGACCTGTTTACAAGGCCCAAATGAGCACCGGCGACACTTTTGCTGTTAAAGTTCTTGCTGCGGATTCCAGGCAAGGCCAGCATGAGTTTTTAGCTGAGGTTTTGTTACTTGCAAGATTACACCACAACAACCTTGTGAACTTGATGGGATATGCTGCCGAAATGGAGCGGCTTATGCTTCTTTATAATTACATGAGCAATGGCAGTCTTGATTCTCATTTACATGGTAAAAAATCTTCGTTACTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

21.3

Weight (kDa)

8.9

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	106 - 196	7.1e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	108 - 193	3e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AccBSI	CCGCTC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	271
AccII	CGCG	1 cut(s)	196
AciI	CCGC	5 cut(s)	156, 194, 261, 407, 514
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	181
AfaI	GTAC	2 cut(s)	118, 124
AfiI	CCNNNNNNNGG	2 cut(s)	48, 118
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	2 cut(s)	216, 308
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	262, 285
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	4 cut(s)	181, 234, 360, 421
ApeKI	GCWGC	2 cut(s)	404, 500
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	235, 347, 361
AsuHPI	GGTGA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	347
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
Bbv12I	GWGCWC	1 cut(s)	374
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	391, 487
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	262, 285
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	4 cut(s)	156, 405, 501, 515
BlsI	GCNGC	4 cut(s)	157, 406, 502, 516
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	3 cut(s)	235, 347, 361
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	415
BoxI	GACNNNNGTC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	165, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 118
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	165, 178
BseLI	CCNNNNNNNGG	2 cut(s)	48, 118
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	391, 487
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	183, 236, 362, 423
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	103, 375
BsiWI	CGTACG	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	48, 118
BsmAI	GTCTC	2 cut(s)	262, 285
BsmBI	CGTCTC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	183, 236, 362, 423
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	5 cut(s)	156, 194, 261, 407, 514
BspANI	GGCC	4 cut(s)	183, 236, 362, 423
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	155
BspTI	CTTAAG	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	165, 178
BssMI	GATC	1 cut(s)	147
BssNAI	GTATAC	1 cut(s)	272
Bst1107I	GTATAC	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	253
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	160, 425
BstDEI	CTNAG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	2 cut(s)	262, 285
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 161, 424, 520
BstNI	CCWGG	1 cut(s)	415
BstNSI	RCATGY	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	391, 487
BstZ17I	GTATAC	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	183, 236, 362, 423
BtrI	CACGTC	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	160, 425
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	235, 347, 361
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	117, 123
CviAII	CATG	6 cut(s)	21, 217, 223, 428, 538, 569
CviQI	GTAC	2 cut(s)	117, 123
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	413
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	6 cut(s)	24, 220, 226, 431, 541, 572
FatI	CATG	6 cut(s)	20, 216, 222, 427, 537, 568
FblI	GTMKAC	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	156, 405, 501, 515
Fsp4HI	GCNGC	4 cut(s)	156, 405, 501, 515
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	4 cut(s)	156, 405, 501, 515
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	183, 236, 362, 423
HapII	CCGG	2 cut(s)	103, 375
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	6 cut(s)	24, 220, 226, 431, 541, 572
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	170, 188, 410, 557
HpaII	CCGG	2 cut(s)	103, 375
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	3 cut(s)	272, 355, 484
Hpy188I	TCNGA	2 cut(s)	169, 205
Hpy188III	TCNNGA	2 cut(s)	319, 554
Hpy8I	GTNNAC	3 cut(s)	272, 355, 484
Hpy99I	CGWCG	4 cut(s)	142, 257, 310, 325
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	20, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 161, 424, 520
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	6 cut(s)	24, 220, 226, 431, 541, 572
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	44, 210, 511
LpnPI	CCDG	8 cut(s)	44, 116, 172, 363, 388, 400, 427, 437
Lsp1109I	GCAGC	2 cut(s)	391, 487
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	3 cut(s)	311, 450, 585
MalI	GATC	1 cut(s)	149
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	573
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	2 cut(s)	283, 532
MlyI	GAGTC	2 cut(s)	164, 182
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	104, 122, 138, 175, 188, 226, 436
MseI	TTAA	2 cut(s)	240, 393
MslI	CAYNNNNRTG	2 cut(s)	221, 567
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	2 cut(s)	103, 375
MspR9I	CCNGG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	4 cut(s)	99, 161, 424, 520
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	6 cut(s)	24, 220, 226, 431, 541, 572
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	230
PciI	ACATGT	1 cut(s)	216
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	410, 557
Pfl23II	CGTACG	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	157, 406, 502, 516
PleI	GAGTC	2 cut(s)	164, 182
PpsI	GAGTC	2 cut(s)	164, 182
PscI	ACATGT	1 cut(s)	216
PshAI	GACNNNNGTC	1 cut(s)	254
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspLI	CGTACG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	3 cut(s)	235, 347, 361
PspXI	VCTCGAGB	1 cut(s)	230
RsaI	GTAC	2 cut(s)	118, 124
RsaNI	GTAC	2 cut(s)	117, 123
RseI	CAYNNNNRTG	2 cut(s)	221, 567
SaqAI	TTAA	2 cut(s)	240, 393
SatI	GCNGC	4 cut(s)	156, 405, 501, 515
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	3 cut(s)	235, 347, 361
SchI	GAGTC	2 cut(s)	164, 182
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	7 cut(s)	114, 180, 311, 352, 442, 447, 480
Sfr274I	CTCGAG	1 cut(s)	230
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	221, 567
SmlI	CTYRAG	2 cut(s)	230, 239
SmoI	CTYRAG	2 cut(s)	230, 239
Sse9I	AATT	2 cut(s)	283, 532
SsiI	CCGC	5 cut(s)	156, 194, 261, 407, 514
StyD4I	CCNGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	283, 532
TauI	GCSGC	2 cut(s)	158, 517
TfiI	GAWTC	2 cut(s)	410, 557
Tru1I	TTAA	2 cut(s)	240, 393
Tru9I	TTAA	2 cut(s)	240, 393
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	404, 500
Tsp45I	GTSAC	1 cut(s)	311
TspGWI	ACGGA	4 cut(s)	31, 58, 104, 303
TspRI	CASTG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.