Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002792

Physical Location & Seq

Genomic Coordinates Forward (+)

14691243 .. 14696210

Gene Structure 4968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21590.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAAAGGCGAGCCAGTTGGGCTGATCATTGGGGTGTCTATAGGGGTAGTGATTGGAGTGCTTTTGGCAATTTCTGGGTTCTTCTGCATTAGGTACCATAGGAAGCGTATGCAAATAGGGAACAGCAGTTCTCGGAGGGCAGCAACTCTTCCTATTCGTGCTAATGGCGCTGACTGTTGTACAATGTTGTCAGACTCGACACTTGGTCCAGACTCACCTGTCAAATCTGGACGGACTGGTGGTTCCTTCTGGCTTGTTGAAGGATTTAAGAAGAGTAATGTAGTCGCAATGTCTGGAATACCCGAGTATTCTTACAAGGATCTGCAGAAAGCAACCTATAATTTTACAACATTGATAGGGCAAGGTGCATTTGGTCCTGTGTACAAAGCTCAGATGTTAACGGGTGAGACTGTTGCTGTTAAGGTGCTTGCAATGGATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTAAGTTACTGGGAAGATTGCATCACAGGAACCTCGTGAACTTAATTGGATACTGTGCAGAAAAAGGCCAACATATGCTTATTTATGTCTACATGAGTAAAGGGAGTTTGGCCTCTCATTTATATAATGAAAAGAATGAGCCATTGAGCTGGGATTTGCGTGTTCATATAGCTTTAGATGTTGCAAGGGGCTTGGAGTATCTTCATGATGGAGCAGTTCCTCCTGTAATACATCGGGATATCAAATCCAACAATATCCTGTTGGATGAATCCATGAGAGCCAGGGTAGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGACAAACATGCAGCCAATATAAGGGGAACTTTTGGCTATCTAGATCCTGAGTATATCTCCACAAGAAATTTTACCAAGAAAAGTGATGTTTACAGCTTTGGAGTTTTGCTGTTTGAACTCATAGCTGGAAGAAATCCTCAACAGGGTCTGATGGAATATGTGGAGCTTGCAGCAATGAATACGGAGGGGAAACTTGGCTGGGAGGAAATCGTGGATTCCCGTCTTAATGGGAACTTTGACGTGCAAGAGCTTAATGAACTGGCAGCCCTTGCATATAAATGTGTTAGCCGGTCCCCAAAAAAGCGGTCTTCCATGAGAGACATTGTACAAGTGCTATCACGAATGCTCAAAGTGAGGCATAACAGAAAGCACCATGTGAAATCGTTGTCATCATTGACCGATGAAGTTACGATTGACGTGAACCAACCAGAAACCAAAACTCAAATGGCTGAACATCAAAGAGATGAGTCAATGGACAGCACAGCCGATACATATGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

432

Amino Acids

48.1

Weight (kDa)

8.41

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 312	9.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 315	1.4e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54590 AT5G54590 AT5G54590 AT5G54590
fragaria_vesca	FvH4_3g02990 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590 FvH4_3g21590
malus_domestica	MD03G1214400.v1.1 MD05G1335500.v1.1 MD11G1229400.v1.1
prunus_persica	Prupe.4G029800_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1 Prupe.4G200300_v2.0.a1
pyrus_communis	pycom03g16310 pycom11g20290
rosa_chinensis	RchiOBHm_Chr5g0004621 RchiOBHm_Chr5g0037051
rosa_laevigata	RLG00000031246 RLG00000033746
rosa_multiflora	Rmu_co8453033.1_g000001 Rmu_sc0014990.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043900 Rroxscaffold_1G00070920
rosa_rugosa	Rorug04G0412600 Rorug05G0159900 Rorug05G0160000
rosa_samantha	Rh5AG040700 Rh5AG252100 Rh5BG040400 Rh5BG253800 Rh5CG044100 Rh5DG040000 Rh5DG262400
rosa_wichuraiana	Rw5G003910 Rw5G023240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	1 cut(s)	1096
AclWI	GGATC	2 cut(s)	327, 830
AcsI	RAATTY	2 cut(s)	458, 859
AdeI	CACNNNGTG	1 cut(s)	1168
AfaI	GTAC	4 cut(s)	95, 181, 383, 1119
AfiI	CCNNNNNNNGG	2 cut(s)	813, 935
AgsI	TTSAA	3 cut(s)	260, 777, 908
AhdI	GACNNNNNGTC	1 cut(s)	204
AjiI	CACGTC	2 cut(s)	1033, 1210
AjnI	CCWGG	1 cut(s)	752
AloI	GAACNNNNNNTCC	4 cut(s)	112, 144, 226, 258
AluBI	AGCT	8 cut(s)	389, 621, 644, 761, 888, 917, 958, 1042
AluI	AGCT	8 cut(s)	389, 621, 644, 761, 888, 917, 958, 1042
Alw26I	GTCTC	2 cut(s)	401, 1104
AlwI	GGATC	2 cut(s)	327, 830
AlwNI	CAGNNNCTG	1 cut(s)	940
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	538, 582
ApeKI	GCWGC	4 cut(s)	140, 803, 962, 1055
ApoI	RAATTY	2 cut(s)	458, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	1082, 1114
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	206, 374, 1083
AsuHPI	GGTGA	2 cut(s)	207, 416
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	3 cut(s)	206, 374, 1083
BanI	GGYRCC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	1092
BbvI	GCAGC	4 cut(s)	152, 815, 974, 1067
BccI	CCATC	3 cut(s)	674, 781, 937
BciT130I	CCWGG	1 cut(s)	754
BciVI	GTATCC	1 cut(s)	515
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	401, 1104
BfaI	CTAG	1 cut(s)	833
BfmI	CTRYAG	2 cut(s)	39, 323
BfoI	RGCGCY	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	515
BglI	GCCNNNNNGGC	1 cut(s)	19
BisI	GCNGC	4 cut(s)	141, 804, 963, 1056
BlsI	GCNGC	4 cut(s)	142, 805, 964, 1057
Bme1390I	CCNGG	1 cut(s)	754
Bme18I	GGWCC	3 cut(s)	206, 374, 1083
BmeRI	GACNNNNNGTC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	2 cut(s)	1033, 1210
BmgT120I	GGNCC	3 cut(s)	206, 374, 1083
BmiI	GGNNCC	4 cut(s)	95, 244, 503, 1085
BmrFI	CCNGG	1 cut(s)	754
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	1092
BplI	GAGNNNNNCTC	2 cut(s)	833, 865
BsaJI	CCNNGG	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	2 cut(s)	813, 935
Bse118I	RCCGGY	1 cut(s)	1080
Bse1I	ACTGG	4 cut(s)	14, 241, 486, 1056
Bse3DI	GCAATG	3 cut(s)	294, 438, 972
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	2 cut(s)	813, 935
BseMI	GCAATG	3 cut(s)	294, 438, 972
BseMII	CTCAG	2 cut(s)	404, 831
BseNI	ACTGG	4 cut(s)	14, 241, 486, 1056
BseXI	GCAGC	4 cut(s)	152, 815, 974, 1067
BseYI	CCCAGC	2 cut(s)	621, 990
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	540, 584
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	1081
BslFI	GGGAC	1 cut(s)	1069
BslI	CCNNNNNNNGG	2 cut(s)	813, 935
BsmAI	GTCTC	2 cut(s)	401, 1104
BsmFI	GGGAC	1 cut(s)	1069
BsmI	GAATGC	1 cut(s)	1140
BsnI	GGCC	2 cut(s)	540, 584
BsoBI	CYCGRG	1 cut(s)	302
Bsp1407I	TGTACA	3 cut(s)	179, 381, 1117
Bsp143I	GATC	3 cut(s)	24, 319, 835
BspACI	CCGC	1 cut(s)	1096
BspANI	GGCC	2 cut(s)	540, 584
BspCNI	CTCAG	2 cut(s)	403, 832
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	95, 244, 503, 1085
BspMAI	CTGCAG	1 cut(s)	327
BspPI	GGATC	2 cut(s)	327, 830
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	3 cut(s)	294, 438, 972
BsrFI	RCCGGY	1 cut(s)	1080
BsrGI	TGTACA	3 cut(s)	179, 381, 1117
BsrI	ACTGG	4 cut(s)	14, 241, 486, 1056
BssAI	RCCGGY	1 cut(s)	1080
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	3 cut(s)	24, 319, 835
BssSI	CACGAG	1 cut(s)	506
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	3 cut(s)	176, 412, 527
Bst6I	CTCTTC	3 cut(s)	153, 266, 777
BstAPI	GCANNNNNTGC	1 cut(s)	1061
BstAUI	TGTACA	3 cut(s)	179, 381, 1117
BstC8I	GCNNGC	3 cut(s)	11, 429, 960
BstDEI	CTNAG	3 cut(s)	390, 441, 840
BstF5I	GGATG	1 cut(s)	742
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	27, 322, 838
BstMAI	GTCTC	2 cut(s)	401, 1104
BstMBI	GATC	3 cut(s)	24, 319, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 167, 758, 1061
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	1 cut(s)	752
BstSFI	CTRYAG	2 cut(s)	39, 323
BstV1I	GCAGC	4 cut(s)	152, 815, 974, 1067
BstV2I	GAAGAC	1 cut(s)	1092
BstX2I	RGATCY	2 cut(s)	319, 835
BstXI	CCANNNNNNTGG	1 cut(s)	621
BstYI	RGATCY	2 cut(s)	319, 835
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	540, 584
BtrI	CACGTC	2 cut(s)	1033, 1210
BtsCI	GGATG	1 cut(s)	742
Cac8I	GCNNGC	3 cut(s)	11, 429, 960
CaiI	CAGNNNCTG	1 cut(s)	940
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	1080
Cfr13I	GGNCC	3 cut(s)	206, 374, 1083
Csp6I	GTAC	4 cut(s)	94, 180, 382, 1118
CviAII	CATG	6 cut(s)	565, 677, 745, 800, 1105, 1166
CviQI	GTAC	4 cut(s)	94, 180, 382, 1118
DdeI	CTNAG	3 cut(s)	390, 441, 840
DpnI	GATC	3 cut(s)	26, 321, 837
DpnII	GATC	3 cut(s)	24, 319, 835
DraIII	CACNNNGTG	1 cut(s)	1168
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	3 cut(s)	153, 266, 777
Eam1105I	GACNNNNNGTC	1 cut(s)	204
EarI	CTCTTC	3 cut(s)	153, 266, 777
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	3 cut(s)	206, 374, 1083
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	752
EcoRV	GATATC	1 cut(s)	712
FaeI	CATG	6 cut(s)	568, 680, 748, 803, 1108, 1169
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	1 cut(s)	1069
FatI	CATG	6 cut(s)	564, 676, 744, 799, 1104, 1165
FauNDI	CATATG	2 cut(s)	546, 1285
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	141, 804, 963, 1056
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	4 cut(s)	141, 804, 963, 1056
FspBI	CTAG	1 cut(s)	833
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	4 cut(s)	141, 804, 963, 1056
GsaI	CCCAGC	2 cut(s)	625, 994
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	540, 584
HapII	CCGG	1 cut(s)	1081
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	6 cut(s)	568, 680, 748, 803, 1108, 1169
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	6 cut(s)	194, 212, 437, 740, 1007, 1259
HpaI	GTTAAC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	1081
HphI	GGTGA	2 cut(s)	207, 416
Hpy166II	GTNNAC	7 cut(s)	382, 399, 511, 562, 793, 883, 1213
Hpy188I	TCNGA	5 cut(s)	135, 193, 393, 465, 942
Hpy8I	GTNNAC	7 cut(s)	382, 399, 511, 562, 793, 883, 1213
HpyAV	CCTTC	2 cut(s)	254, 256
HpyCH4III	ACNGT	3 cut(s)	176, 412, 527
HpyCH4IV	ACGT	2 cut(s)	1032, 1209
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 167, 758, 1061
HpyF3I	CTNAG	3 cut(s)	390, 441, 840
HpySE526I	ACGT	2 cut(s)	1032, 1209
Hsp92II	CATG	6 cut(s)	568, 680, 748, 803, 1108, 1169
HspAI	GCGC	1 cut(s)	168
KpnI	GGTACC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	24, 319, 835
LmnI	GCTCC	2 cut(s)	683, 955
Lsp1109I	GCAGC	4 cut(s)	152, 815, 974, 1067
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	1 cut(s)	833
MaeII	ACGT	2 cut(s)	1032, 1209
MaeIII	GTNAC	2 cut(s)	477, 1198
MalI	GATC	3 cut(s)	26, 321, 837
MboI	GATC	3 cut(s)	24, 319, 835
MboII	GAAGA	8 cut(s)	73, 140, 283, 498, 665, 794, 933, 1092
MflI	RGATCY	2 cut(s)	319, 835
MluCI	AATT	5 cut(s)	69, 340, 458, 516, 859
MlyI	GAGTC	3 cut(s)	188, 206, 1268
MmeI	TCCRAC	2 cut(s)	714, 744
MnlI	CCTC	9 cut(s)	129, 463, 515, 595, 702, 939, 970, 988, 1140
MseI	TTAA	7 cut(s)	267, 398, 420, 474, 515, 1017, 1044
MslI	CAYNNNNRTG	2 cut(s)	32, 1069
MspI	CCGG	1 cut(s)	1081
MspR9I	CCNGG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	1140
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	4 cut(s)	19, 167, 758, 1061
NdeI	CATATG	2 cut(s)	546, 1285
NdeII	GATC	3 cut(s)	24, 319, 835
NlaIII	CATG	6 cut(s)	568, 680, 748, 803, 1108, 1169
NlaIV	GGNNCC	4 cut(s)	95, 244, 503, 1085
NspI	RCATGY	1 cut(s)	803
PagI	TCATGA	1 cut(s)	676
PctI	GAATGC	1 cut(s)	1140
PfeI	GAWTC	3 cut(s)	437, 740, 1007
PkrI	GCNGC	4 cut(s)	142, 805, 964, 1057
PleI	GAGTC	3 cut(s)	188, 206, 1267
PpsI	GAGTC	3 cut(s)	188, 206, 1267
Psp6I	CCWGG	1 cut(s)	752
PspFI	CCCAGC	2 cut(s)	621, 990
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	95, 244, 503, 1085
PspPI	GGNCC	3 cut(s)	206, 374, 1083
PstI	CTGCAG	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	319, 835
RsaI	GTAC	4 cut(s)	95, 181, 383, 1119
RsaNI	GTAC	4 cut(s)	94, 180, 382, 1118
RseI	CAYNNNNRTG	2 cut(s)	32, 1069
SaqAI	TTAA	7 cut(s)	267, 398, 420, 474, 515, 1017, 1044
SatI	GCNGC	4 cut(s)	141, 804, 963, 1056
Sau3AI	GATC	3 cut(s)	24, 319, 835
Sau96I	GGNCC	3 cut(s)	206, 374, 1083
SchI	GAGTC	3 cut(s)	188, 206, 1268
ScrFI	CCNGG	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	2 cut(s)	39, 323
SinI	GGWCC	3 cut(s)	206, 374, 1083
SmiMI	CAYNNNNRTG	2 cut(s)	32, 1069
Sse9I	AATT	5 cut(s)	69, 340, 458, 516, 859
SsiI	CCGC	1 cut(s)	1096
SspMI	CTAG	1 cut(s)	833
StyD4I	CCNGG	1 cut(s)	752
TaaI	ACNGT	3 cut(s)	176, 412, 527
TaiI	ACGT	2 cut(s)	1035, 1212
TaqI	TCGA	1 cut(s)	197
TaqII	GACCGA	1 cut(s)	1205
TasI	AATT	5 cut(s)	69, 340, 458, 516, 859
TatI	WGTACW	3 cut(s)	179, 381, 1117
TfiI	GAWTC	3 cut(s)	437, 740, 1007
Tru1I	TTAA	7 cut(s)	267, 398, 420, 474, 515, 1017, 1044
Tru9I	TTAA	7 cut(s)	267, 398, 420, 474, 515, 1017, 1044
TseI	GCWGC	4 cut(s)	140, 803, 962, 1055
TspDTI	ATGAA	8 cut(s)	17, 615, 626, 665, 753, 983, 1062, 1209
TspGWI	ACGGA	2 cut(s)	247, 989
VpaK11BI	GGWCC	3 cut(s)	206, 374, 1083
XapI	RAATTY	2 cut(s)	458, 859
XbaI	TCTAGA	1 cut(s)	832
XceI	RCATGY	1 cut(s)	803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1234
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.