Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Forward (+)

22869060 .. 22869958

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGAGGAGCATGAGGAGTCATCTGGCGAAGCAAACAAGAAGCGTTATATTCACAGGCTATCCGGTAATCGGAAGCCAAGACCGTATAATGTCGTCTGGTGCGTGTCTAGACAGTCATCAGAACGGATTGATTACATCTTGTCCTTGGGATCCACGCATTAAAGGCGAGTTCTTTTACCAAACAGCATTAAGTGTTCCTCTCACACATGTCAAAGATTTCATCAACGACATTAAAGCACTTGTGAAGATTGAACCAAAATCTCTCTGTGGCCTTGAACTCAACTATGGTGTTCTAGTCCGTTATGTCACATCCTCTCCGGCTTATCTAAGGAAAGAAGAAAAAGCTTTAGACTTTGACCTAACTTACTACAGAAGCAAAGATGATCCTTGGACACCACGTCTCTACGAGGATTACATGGAAGAGATTGAGCAAATGGCGATATTAAAGTACAACGCGTTGCCTCATTGGGGAAAAAATAGGAACCTAGCTTTTGATGGTGCCATTAAAAAGTACAAGAACGCAAACACGTTTTTGAAAGTCAAGGAGAGATTAGATCCGTGGGGGTTGTTTTCTACAGAATGGACCGATCAGATTCTAGGGTTAAAAGGAAACGTGACGATTGTGAAGCAAGGATGTGCACCGGAAGGGCTGTGTATTTGTTCGGATGATTCTCATTGTGCTCCGAACAAAGGTTATATGTGTCGACCAGGTAAAGTTTACAAAGAAGCTAGGGTTTGTACTCTTGTAACCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

252

Amino Acids

28.68

Weight (kDa)

8.85

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALO	PF04030	60 - 198	3.6e-14	D-arabinono-1,4-lactone oxidase
GULLO2-like_3rd	PF22906	210 - 248	3.9e-23	L-gulonolactone oxidase 2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	458
AciI	CCGC	1 cut(s)	753
AclWI	GGATC	4 cut(s)	146, 159, 380, 551
AfaI	GTAC	3 cut(s)	452, 515, 742
AfiI	CCNNNNNNNGG	3 cut(s)	71, 470, 692
AflIII	ACRYGT	3 cut(s)	208, 456, 528
AgsI	TTSAA	3 cut(s)	254, 278, 538
AhdI	GACNNNNNGTC	1 cut(s)	399
AjiI	CACGTC	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	3 cut(s)	347, 491, 731
AluI	AGCT	3 cut(s)	347, 491, 731
Alw21I	GWGCWC	2 cut(s)	643, 685
Alw26I	GTCTC	1 cut(s)	407
Alw44I	GTGCAC	1 cut(s)	639
AlwI	GGATC	4 cut(s)	146, 159, 380, 551
AoxI	GGCC	1 cut(s)	271
ApaLI	GTGCAC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	585
BaeGI	GKGCMC	1 cut(s)	643
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	500
Bbv12I	GWGCWC	2 cut(s)	643, 685
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	5 cut(s)	110, 296, 488, 599, 732
BfmI	CTRYAG	2 cut(s)	370, 576
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	1 cut(s)	585
BmeRI	GACNNNNNGTC	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	3 cut(s)	153, 485, 502
BmrFI	CCNGG	1 cut(s)	711
BsaJI	CCNNGG	3 cut(s)	146, 389, 560
BsaWI	WCCGGW	2 cut(s)	64, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 470, 692
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	3 cut(s)	146, 389, 560
BseGI	GGATG	3 cut(s)	311, 641, 673
BseLI	CCNNNNNNNGG	3 cut(s)	71, 470, 692
BseRI	GAGGAG	2 cut(s)	22, 31
BseSI	GKGCMC	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	500
BsiHKAI	GWGCWC	2 cut(s)	643, 685
BsiSI	CCGG	3 cut(s)	65, 320, 644
BslI	CCNNNNNNNGG	3 cut(s)	71, 470, 692
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	643, 685
Bsp143I	GATC	4 cut(s)	151, 385, 556, 589
BspACI	CCGC	1 cut(s)	753
BspANI	GGCC	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	3 cut(s)	153, 485, 502
BspPI	GGATC	4 cut(s)	146, 159, 380, 551
BspT107I	GGYRCC	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	146, 389, 560
BssMI	GATC	4 cut(s)	151, 385, 556, 589
BssT1I	CCWWGG	2 cut(s)	146, 389
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	86, 116
Bst6I	CTCTTC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	3 cut(s)	311, 641, 673
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	4 cut(s)	154, 388, 559, 592
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	4 cut(s)	151, 385, 556, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	2 cut(s)	370, 576
BstSLI	GKGCMC	1 cut(s)	643
BstUI	CGCG	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	151, 556
BstYI	RGATCY	2 cut(s)	151, 556
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	560
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	311, 641, 673
Cfr13I	GGNCC	1 cut(s)	585
CsiI	ACCWGGT	1 cut(s)	709
Csp6I	GTAC	3 cut(s)	451, 514, 741
CviAII	CATG	3 cut(s)	13, 209, 418
CviJI	RGCY	8 cut(s)	60, 78, 273, 323, 347, 491, 652, 731
CviKI_1	RGCY	8 cut(s)	60, 78, 273, 323, 347, 491, 652, 731
CviQI	GTAC	3 cut(s)	451, 514, 741
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	4 cut(s)	153, 387, 558, 591
DpnII	GATC	4 cut(s)	151, 385, 556, 589
DriI	GACNNNNNGTC	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	417
Eam1105I	GACNNNNNGTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	2 cut(s)	146, 389
Eco47I	GGWCC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	2 cut(s)	146, 389
ErhI	CCWWGG	2 cut(s)	146, 389
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	3 cut(s)	16, 212, 421
FaiI	YATR	9 cut(s)	14, 50, 89, 210, 288, 306, 419, 699, 701
FatI	CATG	3 cut(s)	12, 208, 417
FblI	GTMKAC	1 cut(s)	706
FokI	GGATG	3 cut(s)	298, 648, 680
FspBI	CTAG	5 cut(s)	110, 296, 488, 599, 732
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	3 cut(s)	65, 320, 644
Hin1II	CATG	3 cut(s)	16, 212, 421
HincII	GTYRAC	1 cut(s)	707
HindII	GTYRAC	1 cut(s)	707
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	3 cut(s)	19, 595, 671
HpaII	CCGG	3 cut(s)	65, 320, 644
Hpy166II	GTNNAC	3 cut(s)	641, 707, 721
Hpy188I	TCNGA	5 cut(s)	74, 123, 594, 667, 687
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	3 cut(s)	641, 707, 721
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	86, 116
HpyCH4IV	ACGT	3 cut(s)	400, 530, 615
HpyCH4V	TGCA	1 cut(s)	641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	3 cut(s)	400, 530, 615
Hsp92II	CATG	3 cut(s)	16, 212, 421
Kzo9I	GATC	4 cut(s)	151, 385, 556, 589
LmnI	GCTCC	2 cut(s)	9, 688
LpnPI	CCDG	8 cut(s)	11, 42, 78, 84, 333, 657, 696, 723
MabI	ACCWGGT	1 cut(s)	709
MaeI	CTAG	5 cut(s)	110, 296, 488, 599, 732
MaeII	ACGT	3 cut(s)	400, 530, 615
MaeIII	GTNAC	3 cut(s)	307, 616, 748
MalI	GATC	4 cut(s)	153, 387, 558, 591
MboI	GATC	4 cut(s)	151, 385, 556, 589
MboII	GAAGA	4 cut(s)	16, 259, 350, 434
MflI	RGATCY	2 cut(s)	151, 556
MhlI	GDGCHC	2 cut(s)	643, 685
MluI	ACGCGT	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	5 cut(s)	9, 210, 325, 403, 474
MseI	TTAA	7 cut(s)	162, 191, 234, 446, 507, 605, 757
MspI	CCGG	3 cut(s)	65, 320, 644
MspR9I	CCNGG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	4 cut(s)	151, 385, 556, 589
NlaIII	CATG	3 cut(s)	16, 212, 421
NlaIV	GGNNCC	3 cut(s)	153, 485, 502
NmuCI	GTSAC	2 cut(s)	307, 616
NspI	RCATGY	1 cut(s)	212
PciI	ACATGT	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	595, 671
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PscI	ACATGT	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	153, 485, 502
PspPI	GGNCC	1 cut(s)	585
PsuI	RGATCY	2 cut(s)	151, 556
RsaI	GTAC	3 cut(s)	452, 515, 742
RsaNI	GTAC	3 cut(s)	451, 514, 741
SalI	GTCGAC	1 cut(s)	705
SaqAI	TTAA	7 cut(s)	162, 191, 234, 446, 507, 605, 757
Sau3AI	GATC	4 cut(s)	151, 385, 556, 589
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	2 cut(s)	643, 685
SexAI	ACCWGGT	1 cut(s)	709
SfcI	CTRYAG	2 cut(s)	370, 576
SinI	GGWCC	1 cut(s)	585
SsiI	CCGC	1 cut(s)	753
SspMI	CTAG	5 cut(s)	110, 296, 488, 599, 732
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	2 cut(s)	146, 389
TaaI	ACNGT	2 cut(s)	86, 116
TaiI	ACGT	3 cut(s)	403, 533, 618
TaqI	TCGA	1 cut(s)	706
TaqII	GACCGA	1 cut(s)	602
TatI	WGTACW	3 cut(s)	450, 513, 740
TfiI	GAWTC	2 cut(s)	595, 671
Tru1I	TTAA	7 cut(s)	162, 191, 234, 446, 507, 605, 757
Tru9I	TTAA	7 cut(s)	162, 191, 234, 446, 507, 605, 757
TseFI	GTSAC	2 cut(s)	307, 616
Tsp45I	GTSAC	2 cut(s)	307, 616
TspDTI	ATGAA	2 cut(s)	17, 211
TspGWI	ACGGA	3 cut(s)	141, 290, 549
VneI	GTGCAC	1 cut(s)	639
VpaK11BI	GGWCC	1 cut(s)	585
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	706
XspI	CTAG	5 cut(s)	110, 296, 488, 599, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.