Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

39703011 .. 39706142

Gene Structure 3132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0283500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

ATGCAATTGAACCATCCGAGACTCGAAGGGAATGAGACGGATAGGCTGGCATTGCTAGCAATCAAAGCTCAAATACAACACGATCCGAACCAAGTCACAAGCTCATGGAATGAAACCCTTCATTTTTGCCTGTGGCACGGCGTCACCTGCAGTCGACGACATCGCCAAAGGGTGACGAAGCTGGAGCTGGGCTCTCAAGCTTTGGGGGGATCCATATCTCCACACATAGGAAATCTAAGCTTCTTAAGAGTGCTAATTCTCGAGAACAATAGCTTCACTCATCAAATCCCTCCTCAAATTGGGAATTTGCATAGATTGCAGGTAATGCATCTAAACAATAACTCACTTACTGGGACCATTCCTGCCAATATATCCAATTGCATCAAACTTATCAGTCTCTCTCTTAGTAAAACCAATCTAGTTGGTAAAATTCCTCCCAAACTGGGTTCCTTGTCAAAGCTTCAGAATTTTTCTTTGAATTGGAACAATTTAACAGGAGTGATCCCTCCTTCTTTGGGGAATCTTTCGTCTCTCGAGGGGTTTTCTGTTATAGAAAATAAATTAGAAGGAAGCATTCCTAGTTCTCTATGCCAGTTGAAAAGATTAATAGGTATCTATTTGGAGTCAAATAGGTTGTCTGGTATCATCCCTTCCTGCATTTACAACCTCTCTAGTATAGCTATTTTCGCCATAGGAGGAAACCAAATTCAAGGAAGTCTTCCATCAAACTTGAGCAATGCATTTCCCAACCTTCAAATCTTTACCATTGCCGAAAATCAATTTACTGGGGCCATCCCGTCCTCAATATCCAAGGCAACAAATCTTGTGTGGTTTCAATGTCCGTTAAACAAACTCTCTGGGCAGGTGCCAAATTTACGAAATCTTCATAACATTGTGGTGTTCAATGTCTATGGTAATAATCTTGGAAGCAGTAAAGATGGTGACTTAAGTTTTGTCTCAGAATTGATCAATGCCACACAGCTTATTGTCTTGGATTTCGGCCAGAACAATTTTGGAGGGACGTTGCCCAAATCAATATCCAATCTCTCAACCAATCTCCAACTGTTATCGGTTGGTGGAAACCAACTACAGGGAAGCATCCCAACTGGATTAGGGAATCTTGTCAACCTGCAAGCACTCGTTATGGAAGGAAACTCCTTCAAAGGTAGCATCCCCACATACATTGGGCAGCTTTCAAGGCTTGGGCGGTTGTATCTTAACAACAACCAATTATCAGGGAGCATCCCATCTTCTCTTGGAAATTTAACATTGTTAACAGTTCTCCAATTACAAGAAAATAATCTAAAGGGTAGCATCCCGTCCAGCCTAGGGAAATGCCACTGGTTAAACAAATTGGTTCTTTCCGGAAACAATCTGAATGGCACGATACCTCCTCAGGTTATTGGCCTCTCATCCTTATCAAGAGTTTTGGCATTGGACAGAAACCAGTTCACTGGTTCCCTTCCGATGGGGATTGGCAAGTTGAAGAATTTAGGTGTACTGGACGTTTCTGACAATTTGTTATCAGGAGAACTTCCCAGTAGCCTCGGCACTTGTGAGAGCTTAGAAGAACTATACTTGCAAGGCAACTTCTTCTTGGGACCCATTCCTTCTTCTATGAAGGATCTGAGAGGGATTCAAAATTTAGACCTTTCTCGCAACAATTTGTCAGGAAATATTCCACAATTTCTTGAGAATATGAACTTGCAGTACCTGAACCTCTCCTTCAACCAGTTTTGGGGAGCAGTACCAACTGGCGGTGTTTTTAAGAATGCAAGTGCTACTTCAGTTGCTGGAAATGCTAGACTCTGCGGAGGTATCCCTAGTCTTCGACTTCCTCTGTGCAAGCTTAATCAGTCTAAAAGAGAAGGCATGTCTCGTAGAATGAAACTAATGATCTCTTTAGTCTCCGGGTTCAGCCTTTTGGGACTGGTTGTGGTGCTGTCTCTTTTTCTTCTAGGTAAGAAAAGGAAAAAAACTAATTTAAGCACTCTAGAGAACTCTGTTTTGCAAGTTTCATATGCTACACTCCTCAGAGCTACCGATGGTTTTTCTTCAGCTAATTTGATCGGTGTGGGTGCTTTTGGGTTTGTGTACAAAGGAATCCTTACTGATGATAGAGTTGTTGTCGCTGTGAAGGTCCTTAACATGTTACACCGGGGAGCAGCTAACAGTTTCATGGCCGAATGTGAGGCGTTGAGAAATATCAGACATCGTAATCTGGTCAAGATCTTAACTGCATGTTCAAGTATTGATTTTGGCGGCAATGATTTCAAGGCTCTTGTTTACGAGTTCATGGACAACGGGAGCTTGGAAGAGTGGTTGCATCCATCTACTGGAACTGGAGAGGTAACAGAAGCACCCAAAACTTTAAGTCTTACTCAGAGGCTCAACATTGCCATTGATGTTGCTAGTGCATTGGATTATCTTCACAACCATTGTGAAACACCGATCGTTCATTGTGATCTCAAGCCAAGTAATGTTCTCTTGGATGGTGACCTGACTGGACATGTTTCTGACTTTGGGCTGTCAAGGTTTCTATCAGAACCAACCATGAGTGTTTCTGGAAATCAATTAAACTCCATTGGAATTAGAGGATCAGTTGGTTATGCTGCACCAGAGTATGGTATGGGAAGTGAGGTATCCACATACGGAGATGTTTACAGCTTTGGCATTCTCTTATTAGAAATGTTTACGGGGAAGCGACCCACAGATTACATGTTCAGTGACAGTTTGAATCTTCATAATTATGTGAAGACAACTCTCCCTGAACTTGTTTCAGAGATTTCAAAGTCACTAGTTTTTCAAGAAGGCACCACCAATGTCGCTGAAGCTCACAGGCACAGCCGATTGAGTGTGAGAGCACAGAAAATTGAAGAGTGCTTGACTCTGATACTTGGTATAGGAATTGCATGTTCTGTTGAATCCCCCACAAACAGAAAGGATATCAGTGATGTTGCATCTGAATTGCAATTCATTAGGCGCAATCTTCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

999

Amino Acids

108.31

Weight (kDa)

8.83

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	12 - 51	2.6e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	57 - 159	1.4e-09	Leucine-rich repeat region
LRR_14	PF23598	365 - 454	2.7e-07	Leucine-rich repeat region
LRR_14	PF23598	442 - 576	1.7e-07	Leucine-rich repeat region
Pkinase	PF00069	686 - 915	1.7e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	688 - 908	1.6e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	155, 853
Acc36I	ACCTGC	4 cut(s)	155, 310, 853, 1137
AccB1I	GGYRCC	2 cut(s)	865, 2813
AccB7I	CCANNNNNTGG	2 cut(s)	2336, 2624
AccI	GTMKAC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	1364
AciI	CCGC	4 cut(s)	1207, 1758, 1812, 2262
AclWI	GGATC	6 cut(s)	77, 204, 217, 496, 1632, 2605
AcoI	YGGCCR	2 cut(s)	1000, 2181
AcsI	RAATTY	8 cut(s)	304, 429, 466, 705, 871, 1261, 1489, 1642
AcuI	CTGAAG	4 cut(s)	446, 1770, 2040, 2850
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	4 cut(s)	1500, 1712, 1749, 2096
AflII	CTTAAG	2 cut(s)	244, 946
AflIII	ACRYGT	3 cut(s)	2148, 2509, 2718
AhlI	ACTAGT	1 cut(s)	2797
Alw21I	GWGCWC	1 cut(s)	2866
Alw26I	GTCTC	8 cut(s)	13, 29, 401, 534, 961, 1881, 1912, 1950
AlwI	GGATC	6 cut(s)	77, 204, 217, 496, 1632, 2605
AlwNI	CAGNNNCTG	2 cut(s)	1714, 1793
Ama87I	CYCGRG	2 cut(s)	260, 533
Aor13HI	TCCGGA	1 cut(s)	1364
AoxI	GGCC	4 cut(s)	789, 1000, 1405, 2181
ApeKI	GCWGC	3 cut(s)	1189, 2165, 2612
ApoI	RAATTY	8 cut(s)	304, 429, 466, 705, 871, 1261, 1489, 1642
ArsI	GACNNNNNNTTYG	4 cut(s)	620, 652, 935, 967
AseI	ATTAAT	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	117
AspA2I	CCTAGG	1 cut(s)	1327
AspLEI	GCGC	1 cut(s)	2985
AspS9I	GGNCC	4 cut(s)	354, 789, 1601, 2140
AsuC2I	CCSGG	2 cut(s)	1912, 2159
AsuHPI	GGTGA	4 cut(s)	136, 184, 953, 2507
AsuNHI	GCTAGC	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	260, 533
AvaII	GGWCC	3 cut(s)	354, 1601, 2140
AvrII	CCTAGG	1 cut(s)	1327
AxyI	CCTNAGG	1 cut(s)	1395
BamHI	GGATCC	1 cut(s)	209
BanI	GGYRCC	2 cut(s)	865, 2813
BanII	GRGCYC	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	634, 666
BbsI	GAAGAC	3 cut(s)	710, 1820, 2762
Bbv12I	GWGCWC	1 cut(s)	2866
BbvI	GCAGC	3 cut(s)	1201, 2177, 2599
BccI	CCATC	9 cut(s)	21, 730, 800, 932, 1255, 1462, 2039, 2338, 2486
BceAI	ACGGC	1 cut(s)	154
BciVI	GTATCC	2 cut(s)	1829, 2653
BclI	TGATCA	1 cut(s)	966
BcnI	CCSGG	2 cut(s)	1912, 2159
BcoDI	GTCTC	8 cut(s)	13, 29, 401, 534, 961, 1881, 1912, 1950
BcuI	ACTAGT	1 cut(s)	2797
BfmI	CTRYAG	2 cut(s)	148, 1088
BfrI	CTTAAG	2 cut(s)	244, 946
BfuAI	ACCTGC	4 cut(s)	155, 310, 853, 1137
BfuI	GTATCC	2 cut(s)	1829, 2653
BglII	AGATCT	1 cut(s)	2229
BisI	GCNGC	4 cut(s)	1190, 2166, 2263, 2613
BlnI	CCTAGG	1 cut(s)	1327
BlsI	GCNGC	4 cut(s)	1191, 2167, 2264, 2614
Bme1390I	CCNGG	2 cut(s)	1912, 2159
Bme18I	GGWCC	3 cut(s)	354, 1601, 2140
BmeT110I	CYCGRG	2 cut(s)	260, 533
BmgT120I	GGNCC	4 cut(s)	354, 789, 1601, 2140
BmiI	GGNNCC	9 cut(s)	211, 355, 448, 790, 867, 1459, 1602, 1603, 2815
BmrFI	CCNGG	2 cut(s)	1912, 2159
BmrI	ACTGGG	4 cut(s)	360, 452, 795, 1533
BmsI	GCATC	8 cut(s)	337, 390, 1107, 1179, 1251, 1323, 2335, 2969
BmtI	GCTAGC	1 cut(s)	59
BmuI	ACTGGG	4 cut(s)	360, 452, 795, 1533
BpiI	GAAGAC	3 cut(s)	710, 1820, 2762
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	2 cut(s)	203, 2364
BpuEI	CTTGAG	4 cut(s)	180, 751, 1712, 2453
BpuMI	CCSGG	2 cut(s)	1912, 2159
BsaBI	GATNNNNATC	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	810, 1327, 1546, 2158
BsaWI	WCCGGW	1 cut(s)	1364
BsaXI	ACNNNNNCTCC	2 cut(s)	1375, 1405
Bse21I	CCTNAGG	1 cut(s)	1395
Bse3DI	GCAATG	5 cut(s)	50, 742, 765, 2272, 2394
Bse8I	GATNNNNATC	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	1364
BseDI	CCNNGG	4 cut(s)	810, 1327, 1546, 2158
BseJI	GATNNNNATC	1 cut(s)	214
BseMI	GCAATG	5 cut(s)	50, 742, 765, 2272, 2394
BseMII	CTCAG	5 cut(s)	972, 1409, 1619, 2047, 2396
BseRI	GAGGAG	3 cut(s)	282, 1383, 2021
BseXI	GCAGC	3 cut(s)	1201, 2177, 2599
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	2598
Bsh1285I	CGRYCG	1 cut(s)	2454
BshFI	GGCC	4 cut(s)	791, 1002, 1407, 2183
BshNI	GGYRCC	2 cut(s)	865, 2813
BsiEI	CGRYCG	1 cut(s)	2454
BsiHKAI	GWGCWC	1 cut(s)	2866
BsiHKCI	CYCGRG	2 cut(s)	260, 533
BsiSI	CCGG	3 cut(s)	1365, 1911, 2158
BslFI	GGGAC	4 cut(s)	367, 1033, 1614, 1941
BsmAI	GTCTC	8 cut(s)	13, 29, 401, 534, 961, 1881, 1912, 1950
BsmBI	CGTCTC	2 cut(s)	29, 534
BsmFI	GGGAC	4 cut(s)	367, 1033, 1614, 1941
BsmI	GAATGC	3 cut(s)	573, 1777, 2673
BsnI	GGCC	4 cut(s)	791, 1002, 1407, 2183
BsoBI	CYCGRG	2 cut(s)	260, 533
Bsp1286I	GDGCHC	2 cut(s)	194, 2866
Bsp13I	TCCGGA	1 cut(s)	1364
Bsp1407I	TGTACA	1 cut(s)	2094
BspACI	CCGC	4 cut(s)	1207, 1758, 1812, 2262
BspANI	GGCC	4 cut(s)	791, 1002, 1407, 2183
BspCNI	CTCAG	5 cut(s)	971, 1408, 1620, 2046, 2395
BspEI	TCCGGA	1 cut(s)	1364
BspLI	GGNNCC	9 cut(s)	211, 355, 448, 790, 867, 1459, 1602, 1603, 2815
BspMAI	CTGCAG	1 cut(s)	152
BspMI	ACCTGC	4 cut(s)	155, 310, 853, 1137
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	6 cut(s)	77, 204, 217, 496, 1632, 2605
BspT107I	GGYRCC	2 cut(s)	865, 2813
BspTI	CTTAAG	2 cut(s)	244, 946
BsrDI	GCAATG	5 cut(s)	50, 742, 765, 2272, 2394
BsrGI	TGTACA	1 cut(s)	2094
BssECI	CCNNGG	4 cut(s)	810, 1327, 1546, 2158
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	810, 1327
Bst4CI	ACNGT	4 cut(s)	1065, 1279, 2174, 2732
Bst6I	CTCTTC	2 cut(s)	2310, 2871
BstACI	GRCGYC	1 cut(s)	141
BstAFI	CTTAAG	2 cut(s)	244, 946
BstAPI	GCANNNNNTGC	2 cut(s)	316, 325
BstAUI	TGTACA	1 cut(s)	2094
BstC8I	GCNNGC	4 cut(s)	48, 57, 1134, 1847
BstDEI	CTNAG	8 cut(s)	236, 404, 958, 1395, 1564, 1628, 2033, 2382
BstEII	GGTNACC	1 cut(s)	2495
BstHHI	GCGC	1 cut(s)	2985
BstMAI	GTCTC	8 cut(s)	13, 29, 401, 534, 961, 1881, 1912, 1950
BstMCI	CGRYCG	1 cut(s)	2454
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 56, 65, 147, 316, 325, 686, 1198, 1799
BstNSI	RCATGY	6 cut(s)	1876, 2152, 2244, 2513, 2722, 2916
BstPI	GGTNACC	1 cut(s)	2495
BstSCI	CCNGG	2 cut(s)	1910, 2157
BstSFI	CTRYAG	2 cut(s)	148, 1088
BstV1I	GCAGC	3 cut(s)	1201, 2177, 2599
BstV2I	GAAGAC	3 cut(s)	710, 1820, 2762
BstX2I	RGATCY	3 cut(s)	209, 1624, 2229
BstXI	CCANNNNNNTGG	1 cut(s)	1454
BstYI	RGATCY	3 cut(s)	209, 1624, 2229
Bsu36I	CCTNAGG	1 cut(s)	1395
BsuI	GTATCC	2 cut(s)	1829, 2653
BsuRI	GGCC	4 cut(s)	791, 1002, 1407, 2183
BtgZI	GCGATG	1 cut(s)	146
BtsIMutI	CAGTG	4 cut(s)	1339, 1452, 2731, 2956
BveI	ACCTGC	4 cut(s)	155, 310, 853, 1137
Cac8I	GCNNGC	4 cut(s)	48, 57, 1134, 1847
CaiI	CAGNNNCTG	2 cut(s)	1714, 1793
CfoI	GCGC	1 cut(s)	2985
Cfr13I	GGNCC	4 cut(s)	354, 789, 1601, 2140
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	4 cut(s)	1499, 1711, 1748, 2095
CspCI	CAANNNNNGTGG	2 cut(s)	1165, 1200
CviQI	GTAC	4 cut(s)	1499, 1711, 1748, 2095
DdeI	CTNAG	8 cut(s)	236, 404, 958, 1395, 1564, 1628, 2033, 2382
EaeI	YGGCCR	2 cut(s)	1000, 2181
Eam1104I	CTCTTC	2 cut(s)	2310, 2871
EarI	CTCTTC	2 cut(s)	2310, 2871
Eco130I	CCWWGG	2 cut(s)	810, 1327
Eco24I	GRGCYC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	2947
Eco47I	GGWCC	3 cut(s)	354, 1601, 2140
Eco57I	CTGAAG	4 cut(s)	446, 1770, 2040, 2850
Eco81I	CCTNAGG	1 cut(s)	1395
Eco88I	CYCGRG	2 cut(s)	260, 533
Eco91I	GGTNACC	1 cut(s)	2495
EcoO109I	RGGNCCY	2 cut(s)	1601, 2140
EcoO65I	GGTNACC	1 cut(s)	2495
EcoRV	GATATC	1 cut(s)	2947
EcoT14I	CCWWGG	2 cut(s)	810, 1327
EcoT22I	ATGCAT	2 cut(s)	330, 742
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	810, 1327
Esp3I	CGTCTC	2 cut(s)	29, 534
FalI	AAGNNNNNCTT	6 cut(s)	702, 734, 1768, 1800, 2091, 2123
FaqI	GGGAC	4 cut(s)	367, 1033, 1614, 1941
FauNDI	CATATG	1 cut(s)	2020
FbaI	TGATCA	1 cut(s)	966
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	1190, 2166, 2263, 2613
FokI	GGATG	9 cut(s)	632, 779, 1085, 1157, 1229, 1301, 1399, 2313, 2504
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	1190, 2166, 2263, 2613
GlaI	GCGC	1 cut(s)	2984
GluI	GCNGC	4 cut(s)	1190, 2166, 2263, 2613
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	203, 2364
HaeIII	GGCC	4 cut(s)	791, 1002, 1407, 2183
HapII	CCGG	3 cut(s)	1365, 1911, 2158
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	2985
Hin1I	GRCGYC	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	2983
HinP1I	GCGC	1 cut(s)	2983
HincII	GTYRAC	3 cut(s)	155, 1126, 1275
HindII	GTYRAC	3 cut(s)	155, 1126, 1275
HindIII	AAGCTT	4 cut(s)	198, 238, 458, 1847
HpaI	GTTAAC	1 cut(s)	1275
HpaII	CCGG	3 cut(s)	1365, 1911, 2158
HphI	GGTGA	4 cut(s)	136, 184, 953, 2507
Hpy166II	GTNNAC	9 cut(s)	155, 1126, 1275, 1452, 1499, 2095, 2287, 2662, 2694
Hpy8I	GTNNAC	9 cut(s)	155, 1126, 1275, 1452, 1499, 2095, 2287, 2662, 2694
Hpy99I	CGWCG	1 cut(s)	159
HpyCH4III	ACNGT	4 cut(s)	1065, 1279, 2174, 2732
HpyCH4IV	ACGT	2 cut(s)	1022, 1506
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 56, 65, 147, 316, 325, 686, 1198, 1799
HpyF3I	CTNAG	8 cut(s)	236, 404, 958, 1395, 1564, 1628, 2033, 2382
HpySE526I	ACGT	2 cut(s)	1022, 1506
Hsp92I	GRCGYC	1 cut(s)	141
HspAI	GCGC	1 cut(s)	2983
KflI	GGGWCCC	1 cut(s)	1601
Kpn2I	TCCGGA	1 cut(s)	1364
Ksp22I	TGATCA	1 cut(s)	966
KspAI	GTTAAC	1 cut(s)	1275
LmnI	GCTCC	5 cut(s)	184, 1239, 1742, 2162, 2307
Lsp1109I	GCAGC	3 cut(s)	1201, 2177, 2599
LweI	GCATC	8 cut(s)	337, 390, 1107, 1179, 1251, 1323, 2335, 2969
MaeII	ACGT	2 cut(s)	1022, 1506
MaeIII	GTNAC	9 cut(s)	94, 142, 172, 941, 2151, 2350, 2495, 2726, 2793
MfeI	CAATTG	2 cut(s)	5, 376
MflI	RGATCY	3 cut(s)	209, 1624, 2229
MhlI	GDGCHC	2 cut(s)	194, 2866
MlyI	GAGTC	4 cut(s)	15, 632, 1800, 2881
MmeI	TCCRAC	1 cut(s)	1084
Mph1103I	ATGCAT	2 cut(s)	330, 742
MroI	TCCGGA	1 cut(s)	1364
MroXI	GAANNNNTTC	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	896, 2748
MspCI	CTTAAG	2 cut(s)	244, 946
MspI	CCGG	3 cut(s)	1365, 1911, 2158
MspR9I	CCNGG	2 cut(s)	1912, 2159
MunI	CAATTG	2 cut(s)	5, 376
Mva1269I	GAATGC	3 cut(s)	573, 1777, 2673
MwoI	GCNNNNNNNGC	9 cut(s)	52, 56, 65, 147, 316, 325, 686, 1198, 1799
NciI	CCSGG	2 cut(s)	1912, 2159
NdeI	CATATG	1 cut(s)	2020
NheI	GCTAGC	1 cut(s)	55
NlaIV	GGNNCC	9 cut(s)	211, 355, 448, 790, 867, 1459, 1602, 1603, 2815
NmeAIII	GCCGAG	1 cut(s)	1527
NmuCI	GTSAC	7 cut(s)	94, 142, 172, 941, 2495, 2726, 2793
NsiI	ATGCAT	2 cut(s)	330, 742
NspI	RCATGY	6 cut(s)	1876, 2152, 2244, 2513, 2722, 2916
PaeR7I	CTCGAG	2 cut(s)	260, 533
PaqCI	CACCTGC	2 cut(s)	155, 853
PciI	ACATGT	3 cut(s)	2148, 2509, 2718
PctI	GAATGC	3 cut(s)	573, 1777, 2673
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	6 cut(s)	520, 1117, 1636, 2103, 2737, 2924
PflMI	CCANNNNNTGG	2 cut(s)	2336, 2624
PkrI	GCNGC	4 cut(s)	1191, 2167, 2264, 2614
Ple19I	CGATCG	1 cut(s)	2454
PleI	GAGTC	4 cut(s)	15, 631, 1800, 2881
PpsI	GAGTC	4 cut(s)	15, 631, 1800, 2881
PpuMI	RGGWCCY	2 cut(s)	1601, 2140
PscI	ACATGT	3 cut(s)	2148, 2509, 2718
PshBI	ATTAAT	1 cut(s)	605
Psp5II	RGGWCCY	2 cut(s)	1601, 2140
PspEI	GGTNACC	1 cut(s)	2495
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	9 cut(s)	211, 355, 448, 790, 867, 1459, 1602, 1603, 2815
PspPI	GGNCC	4 cut(s)	354, 789, 1601, 2140
PspPPI	RGGWCCY	2 cut(s)	1601, 2140
PsrI	GAACNNNNNNTAC	2 cut(s)	1694, 1726
PstI	CTGCAG	1 cut(s)	152
PstNI	CAGNNNCTG	2 cut(s)	1714, 1793
PsuI	RGATCY	3 cut(s)	209, 1624, 2229
PvuI	CGATCG	1 cut(s)	2454
RsaI	GTAC	4 cut(s)	1500, 1712, 1749, 2096
RsaNI	GTAC	4 cut(s)	1499, 1711, 1748, 2095
RseI	CAYNNNNRTG	2 cut(s)	896, 2748
SalI	GTCGAC	1 cut(s)	153
SatI	GCNGC	4 cut(s)	1190, 2166, 2263, 2613
Sau96I	GGNCC	4 cut(s)	354, 789, 1601, 2140
SchI	GAGTC	4 cut(s)	15, 632, 1800, 2881
ScrFI	CCNGG	2 cut(s)	1912, 2159
SduI	GDGCHC	2 cut(s)	194, 2866
SfaNI	GCATC	8 cut(s)	337, 390, 1107, 1179, 1251, 1323, 2335, 2969
SfcI	CTRYAG	2 cut(s)	148, 1088
Sfr274I	CTCGAG	2 cut(s)	260, 533
SinI	GGWCC	3 cut(s)	354, 1601, 2140
SlaI	CTCGAG	2 cut(s)	260, 533
SmiMI	CAYNNNNRTG	2 cut(s)	896, 2748
SmlI	CTYRAG	8 cut(s)	195, 244, 260, 533, 730, 946, 1691, 2468
SmoI	CTYRAG	8 cut(s)	195, 244, 260, 533, 730, 946, 1691, 2468
SpeI	ACTAGT	1 cut(s)	2797
SsiI	CCGC	4 cut(s)	1207, 1758, 1812, 2262
SspI	AATATT	1 cut(s)	1678
StyD4I	CCNGG	2 cut(s)	1910, 2157
StyI	CCWWGG	2 cut(s)	810, 1327
TaaI	ACNGT	4 cut(s)	1065, 1279, 2174, 2732
TaiI	ACGT	2 cut(s)	1025, 1509
TaqI	TCGA	5 cut(s)	24, 154, 261, 534, 1831
TatI	WGTACW	2 cut(s)	1498, 2094
TauI	GCSGC	1 cut(s)	2265
TfiI	GAWTC	6 cut(s)	520, 1117, 1636, 2103, 2737, 2924
TscAI	CASTG	4 cut(s)	1346, 1459, 2731, 2956
TseFI	GTSAC	7 cut(s)	94, 142, 172, 941, 2495, 2726, 2793
TseI	GCWGC	3 cut(s)	1189, 2165, 2612
Tsp45I	GTSAC	7 cut(s)	94, 142, 172, 941, 2495, 2726, 2793
TspGWI	ACGGA	3 cut(s)	53, 831, 2667
TspRI	CASTG	4 cut(s)	1346, 1459, 2731, 2956
Van91I	CCANNNNNTGG	2 cut(s)	2336, 2624
Vha464I	CTTAAG	2 cut(s)	244, 946
VpaK11BI	GGWCC	3 cut(s)	354, 1601, 2140
VspI	ATTAAT	1 cut(s)	605
XapI	RAATTY	8 cut(s)	304, 429, 466, 705, 871, 1261, 1489, 1642
XbaI	TCTAGA	1 cut(s)	1993
XceI	RCATGY	6 cut(s)	1876, 2152, 2244, 2513, 2722, 2916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XhoI	CTCGAG	2 cut(s)	260, 533
XmaJI	CCTAGG	1 cut(s)	1327
XmiI	GTMKAC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	117
Zsp2I	ATGCAT	2 cut(s)	330, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.