pycom01g11170

D-arabinono-1,4-lactone oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
12058386 .. 12062707
4322 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11170.3

Sequence Viewer

Length: 1629 bp
ATGTCTTTGTTATACACAAACTCAGTTAAGTTGGGGATCCTTCTCCGATCAATTTGTCTATTCATATTGTCATTCTCGGTGTGTATTTCAACCCCTCCAGAGGCCCACATAAAGTGTTCATCATCAACCAACACAAACTGCACCATCACAAACTCCTACGGCATCTTCCCCGATCGATCGGTTTGTCGAGCAGGCAGCGTAGCATATCCTTCGGATGAGGAAGAACTAATTTCAGTAGTGGCCAATGCAGCAAAGAAGAAAACCAAAATGAAGGTGGCAACTCGTTACTCTCATAGCATTCCAAAGCTGGTTTGTCCAAGTGGGGAAGATGGGTTGATCATAAGCACCAAGTACCTCAATCGTGTGGTGGAGATTGATGCTGAAGCAAAGACCATGACATTGGAGAGTGGTGTGACTCTTAGGCAGCTTATCAGTGAGGCTGCCAAGGCAGGGCTGGCCTTGCCTTATACACCATATTGGTGGGGTTTAACCGTTGGAGGTTTATTAGGGACTGGGGCACATGGTAGTACATTGTGGGGCAAGGGAAGCTCGATTCATGATTATGTGGTGGGACTTACAATTGTGAGTCCAGGAGGGCCTGGGGATGGTTATGTCAAGGTCCGAAGGCTCAATAATGGTGATAAAGATCTTAATGCAGCTAAGGTTTCACTTGGAGTCCTAGGAGTAATTTCCCAGGTTACTCTAAATTTGCAACCCATGTTTAAGCGATCCATCACTTATCTGAGCGAGGACGATTCAGATTTGGGAGACCAAGTAGTTAAGTTTGGCAAGGAACACGAGTTTGCAGACATCCTATGGTACCCTAGCCAGCACAAGGCAGTCTATCGGATGGATGATCGAGTCTCCACCAATACCTCTGGCAATGGCTTATATGACTTCATTCCTTTTCGAGACACACCTTCCCTTGCTCTTGCAGTTGTCAGAACGACAGAGGAGAATCAAGAATCCAAGAGTGATGCTGATGGGAAATGCACGGGTGCGAAGTTGGTTACATCTACACTCATTAAAAGTGCTTATGGTTTAACAAACAATGGTCTGATTTTTACTGGCTATCCTGTTATTGGATATCAGCACCGGCTTCAATCATCAGGGACTTGCCTAGATAGTCTTGAGAATTCAAGAATCACAGCGTGCGCATGGGATCCCAATATCAAGGGTGAGTTTTTTCATCAAACAACATTCAGCATCAACTTGTCTCTGGCTAAGAACTTCATCCAAGATGTGCAAAAGCTGGTTGAGATTGAACCAAAAGCGCTTTGTGGAGTAGAAATCTACAATGGAATCCTAATGCGGTATGTTACAACCTCAAGCGCTTACCTTGGCAAGCAAAACGATGCAATCGACTTCGATATCACATATTATCGAAGTAAAGACCCTATGACTCCTAGACTCCATGAAGGAATACTTGAAGAAATAGAGCAACTTGCTCTTGTTAAGTATGGAGCATTGCCTCATTGGGGAAAAAATCGGAACATAGCATTTGATGGAGTGATGAACAAGTACAAGGGTGCTAAAGAGTTCTTGAAGGTAAAAAATGTTTACGATCCAATGGGCCTATTCTCTAGTGAATGGACAGATCGATCGTTCTTGGACTTAAGGATGGGGTGA

Protein Analysis

543

Amino Acids

59.62

Weight (kDa)

7.53

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1156
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 819
AciI CCGC 1 cut(s) 1312
AclWI GGATC 6 cut(s) 31, 44, 723, 1157, 1170, 1559
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 2 cut(s) 706, 1135
AcuI CTGAAG 1 cut(s) 402
AdeI CACNNNGTG 1 cut(s) 1152
AfaI GTAC 4 cut(s) 353, 529, 821, 1523
AfeI AGCGCT 2 cut(s) 1275, 1333
AfiI CCNNNNNNNGG 6 cut(s) 100, 450, 605, 835, 1082, 1478
AflII CTTAAG 1 cut(s) 1615
AgsI TTSAA 6 cut(s) 90, 1103, 1140, 1265, 1430, 1546
AjnI CCWGG 3 cut(s) 589, 598, 693
AluBI AGCT 5 cut(s) 307, 427, 549, 659, 1252
AluI AGCT 5 cut(s) 307, 427, 549, 659, 1252
Alw26I GTCTC 4 cut(s) 762, 868, 906, 1221
AlwI GGATC 6 cut(s) 31, 44, 723, 1157, 1170, 1559
Aor51HI AGCGCT 2 cut(s) 1275, 1333
AoxI GGCC 5 cut(s) 102, 240, 456, 596, 1573
ApeKI GCWGC 5 cut(s) 195, 248, 424, 440, 656
ApoI RAATTY 2 cut(s) 706, 1135
Asp718I GGTACC 1 cut(s) 819
AspA2I CCTAGG 1 cut(s) 679
AspLEI GCGC 3 cut(s) 1157, 1276, 1334
AspS9I GGNCC 4 cut(s) 103, 596, 619, 1573
AsuHPI GGTGA 2 cut(s) 650, 1190
AvaII GGWCC 1 cut(s) 619
AvrII CCTAGG 1 cut(s) 679
BaeGI GKGCMC 1 cut(s) 520
BalI TGGCCA 1 cut(s) 242
BamHI GGATCC 2 cut(s) 36, 1162
BanI GGYRCC 1 cut(s) 819
BauI CACGAG 1 cut(s) 797
BbvI GCAGC 5 cut(s) 207, 260, 427, 436, 668
BccI CCATC 8 cut(s) 152, 323, 599, 740, 844, 977, 1499, 1615
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BciT130I CCWGG 3 cut(s) 591, 600, 695
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 4 cut(s) 762, 868, 906, 1221
BfaI CTAG 5 cut(s) 680, 825, 1121, 1407, 1584
BfoI RGCGCY 2 cut(s) 1277, 1335
BfrI CTTAAG 1 cut(s) 1615
BglII AGATCT 1 cut(s) 646
BisI GCNGC 5 cut(s) 196, 249, 425, 441, 657
BlnI CCTAGG 1 cut(s) 679
BlsI GCNGC 5 cut(s) 197, 250, 426, 442, 658
Bme1390I CCNGG 3 cut(s) 591, 600, 695
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 4 cut(s) 103, 596, 619, 1573
BmiI GGNNCC 3 cut(s) 38, 821, 1164
BmrFI CCNGG 3 cut(s) 591, 600, 695
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 5 cut(s) 171, 367, 967, 1215, 1345
BmuI ACTGGG 1 cut(s) 522
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 2 cut(s) 1151, 1312
Bsa29I ATCGAT 2 cut(s) 175, 1600
BsaBI GATNNNNATC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 5 cut(s) 444, 599, 679, 693, 1339
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 450, 605, 835, 1082, 1478
Bse118I RCCGGY 1 cut(s) 1095
Bse1I ACTGG 2 cut(s) 517, 1072
Bse3DI GCAATG 2 cut(s) 889, 1466
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 3 cut(s) 591, 600, 695
BseCI ATCGAT 2 cut(s) 175, 1600
BseDI CCNNGG 5 cut(s) 444, 599, 679, 693, 1339
BseGI GGATG 7 cut(s) 220, 610, 810, 855, 859, 1233, 1626
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 6 cut(s) 100, 450, 605, 835, 1082, 1478
BseMI GCAATG 2 cut(s) 889, 1466
BseMII CTCAG 2 cut(s) 36, 734
BseNI ACTGG 2 cut(s) 517, 1072
BseRI GAGGAG 1 cut(s) 968
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 5 cut(s) 207, 260, 427, 436, 668
BsgI GTGCAG 1 cut(s) 124
Bsh1285I CGRYCG 3 cut(s) 175, 179, 1604
BshFI GGCC 5 cut(s) 104, 242, 458, 598, 1575
BshNI GGYRCC 1 cut(s) 819
BshVI ATCGAT 2 cut(s) 175, 1600
BsiEI CGRYCG 3 cut(s) 175, 179, 1604
BsiSI CCGG 1 cut(s) 1096
BslFI GGGAC 3 cut(s) 523, 585, 1126
BslI CCNNNNNNNGG 6 cut(s) 100, 450, 605, 835, 1082, 1478
BsmAI GTCTC 4 cut(s) 762, 868, 906, 1221
BsmFI GGGAC 3 cut(s) 523, 585, 1126
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 5 cut(s) 104, 242, 458, 598, 1575
Bso31I GGTCTC 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 520
BspACI CCGC 1 cut(s) 1312
BspANI GGCC 5 cut(s) 104, 242, 458, 598, 1575
BspCNI CTCAG 2 cut(s) 35, 735
BspDI ATCGAT 2 cut(s) 175, 1600
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 38, 821, 1164
BspPI GGATC 6 cut(s) 31, 44, 723, 1157, 1170, 1559
BspT107I GGYRCC 1 cut(s) 819
BspTI CTTAAG 1 cut(s) 1615
BspTNI GGTCTC 1 cut(s) 762
BsrDI GCAATG 2 cut(s) 889, 1466
BsrFI RCCGGY 1 cut(s) 1095
BsrI ACTGG 2 cut(s) 517, 1072
BssAI RCCGGY 1 cut(s) 1095
BssECI CCNNGG 5 cut(s) 444, 599, 679, 693, 1339
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 3 cut(s) 444, 679, 1339
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 3 cut(s) 591, 600, 695
Bst4CI ACNGT 1 cut(s) 493
BstAFI CTTAAG 1 cut(s) 1615
BstC8I GCNNGC 5 cut(s) 193, 456, 830, 1153, 1346
BstDEI CTNAG 5 cut(s) 22, 419, 660, 743, 1224
BstF5I GGATG 7 cut(s) 220, 610, 810, 855, 859, 1233, 1626
BstH2I RGCGCY 2 cut(s) 1277, 1335
BstHHI GCGC 3 cut(s) 1157, 1276, 1334
BstMAI GTCTC 4 cut(s) 762, 868, 906, 1221
BstMCI CGRYCG 3 cut(s) 175, 179, 1604
BstMWI GCNNNNNNNGC 5 cut(s) 248, 446, 455, 460, 546
BstNI CCWGG 3 cut(s) 591, 600, 695
BstSCI CCNGG 3 cut(s) 589, 598, 693
BstSLI GKGCMC 1 cut(s) 520
BstV1I GCAGC 5 cut(s) 207, 260, 427, 436, 668
BstX2I RGATCY 3 cut(s) 36, 646, 1162
BstXI CCANNNNNNTGG 2 cut(s) 400, 480
BstYI RGATCY 3 cut(s) 36, 646, 1162
Bsu15I ATCGAT 2 cut(s) 175, 1600
BsuRI GGCC 5 cut(s) 104, 242, 458, 598, 1575
BsuTUI ATCGAT 2 cut(s) 175, 1600
BtsCI GGATG 7 cut(s) 220, 610, 810, 855, 859, 1233, 1626
BtsIMutI CAGTG 1 cut(s) 439
Cac8I GCNNGC 5 cut(s) 193, 456, 830, 1153, 1346
CciI TCATGA 1 cut(s) 556
CfoI GCGC 3 cut(s) 1157, 1276, 1334
Cfr10I RCCGGY 1 cut(s) 1095
Cfr13I GGNCC 4 cut(s) 103, 596, 619, 1573
ClaI ATCGAT 2 cut(s) 175, 1600
Csp6I GTAC 4 cut(s) 352, 528, 820, 1522
CviAII CATG 6 cut(s) 394, 521, 557, 718, 1158, 1415
CviQI GTAC 4 cut(s) 352, 528, 820, 1522
DdeI CTNAG 5 cut(s) 22, 419, 660, 743, 1224
DraIII CACNNNGTG 1 cut(s) 1152
EaeI YGGCCR 1 cut(s) 240
Eco130I CCWWGG 3 cut(s) 444, 679, 1339
Eco31I GGTCTC 1 cut(s) 762
Eco32I GATATC 2 cut(s) 1088, 1372
Eco47I GGWCC 1 cut(s) 619
Eco47III AGCGCT 2 cut(s) 1275, 1333
Eco57I CTGAAG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 596
EcoRI GAATTC 1 cut(s) 1135
EcoRII CCWGG 3 cut(s) 589, 598, 693
EcoRV GATATC 2 cut(s) 1088, 1372
EcoT14I CCWWGG 3 cut(s) 444, 679, 1339
ErhI CCWWGG 3 cut(s) 444, 679, 1339
FaeI CATG 6 cut(s) 397, 524, 560, 721, 1161, 1418
FalI AAGNNNNNCTT 2 cut(s) 1410, 1442
FaqI GGGAC 3 cut(s) 523, 585, 1126
FatI CATG 6 cut(s) 393, 520, 556, 717, 1157, 1414
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 5 cut(s) 196, 249, 425, 441, 657
FokI GGATG 6 cut(s) 227, 617, 797, 862, 866, 1220
Fsp4HI GCNGC 5 cut(s) 196, 249, 425, 441, 657
FspAI RTGCGCAY 1 cut(s) 1156
FspBI CTAG 5 cut(s) 680, 825, 1121, 1407, 1584
FspI TGCGCA 1 cut(s) 1156
GlaI GCGC 3 cut(s) 1156, 1275, 1333
GluI GCNGC 5 cut(s) 196, 249, 425, 441, 657
GsuI CTGGAG 1 cut(s) 81
HaeII RGCGCY 2 cut(s) 1277, 1335
HaeIII GGCC 5 cut(s) 104, 242, 458, 598, 1575
HapII CCGG 1 cut(s) 1096
HhaI GCGC 3 cut(s) 1157, 1276, 1334
Hin1II CATG 6 cut(s) 397, 524, 560, 721, 1161, 1418
Hin6I GCGC 3 cut(s) 1155, 1274, 1332
HinP1I GCGC 3 cut(s) 1155, 1274, 1332
HpaII CCGG 1 cut(s) 1096
HphI GGTGA 2 cut(s) 650, 1190
Hpy166II GTNNAC 1 cut(s) 1561
Hpy188I TCNGA 9 cut(s) 47, 214, 623, 744, 760, 849, 944, 1059, 1491
Hpy188III TCNNGA 7 cut(s) 98, 557, 911, 962, 1130, 1140, 1543
Hpy8I GTNNAC 1 cut(s) 1561
HpyAV CCTTC 7 cut(s) 50, 219, 265, 618, 930, 1412, 1540
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4V TGCA 9 cut(s) 141, 248, 656, 712, 806, 935, 993, 1246, 1358
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 446, 455, 460, 546
HpyF3I CTNAG 5 cut(s) 22, 419, 660, 743, 1224
Hsp92II CATG 6 cut(s) 397, 524, 560, 721, 1161, 1418
HspAI GCGC 3 cut(s) 1155, 1274, 1332
KpnI GGTACC 1 cut(s) 823
Ksp22I TGATCA 1 cut(s) 336
LmnI GCTCC 1 cut(s) 1463
Lsp1109I GCAGC 5 cut(s) 207, 260, 427, 436, 668
LweI GCATC 5 cut(s) 171, 367, 967, 1215, 1345
MaeI CTAG 5 cut(s) 680, 825, 1121, 1407, 1584
MaeIII GTNAC 5 cut(s) 284, 412, 697, 1009, 1318
MboII GAAGA 5 cut(s) 157, 233, 268, 338, 1442
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 3 cut(s) 36, 646, 1162
MhlI GDGCHC 1 cut(s) 520
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 6 cut(s) 51, 228, 579, 687, 706, 1135
MluNI TGGCCA 1 cut(s) 242
MlyI GAGTC 6 cut(s) 409, 595, 684, 870, 1396, 1404
MmeI TCCRAC 1 cut(s) 475
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 9 cut(s) 27, 488, 651, 723, 780, 1026, 1043, 1455, 1616
MslI CAYNNNNRTG 2 cut(s) 478, 561
Msp20I TGGCCA 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 1615
MspI CCGG 1 cut(s) 1096
MspR9I CCNGG 3 cut(s) 591, 600, 695
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 297
MvaI CCWGG 3 cut(s) 591, 600, 695
MwoI GCNNNNNNNGC 5 cut(s) 248, 446, 455, 460, 546
NlaIII CATG 6 cut(s) 397, 524, 560, 721, 1161, 1418
NlaIV GGNNCC 3 cut(s) 38, 821, 1164
NmuCI GTSAC 1 cut(s) 412
NsbI TGCGCA 1 cut(s) 1156
PagI TCATGA 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 1359
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 6 cut(s) 553, 755, 958, 965, 1143, 1302
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 5 cut(s) 197, 250, 426, 442, 658
Ple19I CGATCG 3 cut(s) 175, 179, 1604
PleI GAGTC 6 cut(s) 409, 594, 683, 869, 1396, 1404
PpsI GAGTC 6 cut(s) 409, 594, 683, 869, 1396, 1404
Psp6I CCWGG 3 cut(s) 589, 598, 693
PspGI CCWGG 3 cut(s) 589, 598, 693
PspN4I GGNNCC 3 cut(s) 38, 821, 1164
PspPI GGNCC 4 cut(s) 103, 596, 619, 1573
PsuI RGATCY 3 cut(s) 36, 646, 1162
PvuI CGATCG 3 cut(s) 175, 179, 1604
RsaI GTAC 4 cut(s) 353, 529, 821, 1523
RsaNI GTAC 4 cut(s) 352, 528, 820, 1522
RseI CAYNNNNRTG 2 cut(s) 478, 561
SaqAI TTAA 9 cut(s) 27, 488, 651, 723, 780, 1026, 1043, 1455, 1616
SatI GCNGC 5 cut(s) 196, 249, 425, 441, 657
Sau96I GGNCC 4 cut(s) 103, 596, 619, 1573
SchI GAGTC 6 cut(s) 409, 595, 684, 870, 1396, 1404
ScrFI CCNGG 3 cut(s) 591, 600, 695
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 5 cut(s) 171, 367, 967, 1215, 1345
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 2 cut(s) 478, 561
SmlI CTYRAG 3 cut(s) 1130, 1327, 1615
SmoI CTYRAG 3 cut(s) 1130, 1327, 1615
Sse9I AATT 6 cut(s) 51, 228, 579, 687, 706, 1135
SsiI CCGC 1 cut(s) 1312
SspMI CTAG 5 cut(s) 680, 825, 1121, 1407, 1584
StyD4I CCNGG 3 cut(s) 589, 598, 693
StyI CCWWGG 3 cut(s) 444, 679, 1339
TaaI ACNGT 1 cut(s) 493
TaqI TCGA 9 cut(s) 175, 187, 551, 859, 910, 1362, 1368, 1384, 1600
TasI AATT 6 cut(s) 51, 228, 579, 687, 706, 1135
TatI WGTACW 2 cut(s) 527, 1521
TfiI GAWTC 6 cut(s) 553, 755, 958, 965, 1143, 1302
Tru1I TTAA 9 cut(s) 27, 488, 651, 723, 780, 1026, 1043, 1455, 1616
Tru9I TTAA 9 cut(s) 27, 488, 651, 723, 780, 1026, 1043, 1455, 1616
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 5 cut(s) 195, 248, 424, 440, 656
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 9 cut(s) 52, 108, 284, 545, 889, 1178, 1222, 1431, 1529
TspRI CASTG 1 cut(s) 439
Vha464I CTTAAG 1 cut(s) 1615
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 2 cut(s) 706, 1135
XcmI CCANNNNNNNNNTGG 2 cut(s) 271, 451
XmaJI CCTAGG 1 cut(s) 679
XspI CTAG 5 cut(s) 680, 825, 1121, 1407, 1584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.