RchiOBHm_Chr3g0481291

D-arabinono-1,4-lactone oxidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
27358984 .. 27360721
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44626

Sequence Viewer

Length: 1248 bp
ATGAAAAAAATACTGTACCTCTATAATTATGAGAAAAGGTATCATACAATTTTTGGTACAAAATTTAAACAGCAAAAAAAAGTACCAAAATTTATTATTACTATTACAATCATTAATTTATTTTTGTATATATGCCTGCTAATGAAGACAAACAAGTCTAAGAGACAAAAACTTTGGCAGGTTACTCTAAACCTACAACCCATGTTCAAGAGGTCCATCACATATTTGAGCAAGAGCGATTCTGACTTGGGAGATCAAGTGCTTAAGTTTGGCAAGCAGCATGAGTTTGCGGACATAATATGGTATCCTAGCCAGCACAAGGCAGTTTATCGAGTAGATGATCGTATCTCCTCAAACACATCCGGAAATGGTTTATATGATTTCCTTCCTTTTCGAGCAACGCCTTCAGTTGCACTGGCAGTTATAAGAACGGCAGAGAACCAAGAATCAAAAAGCGATGCTGATGGGAAATGCTCTGGGGCAAAGTTGGTCACATCTGGGCTTCTATCCGATGCTTATGGTTTGACAAACAATGGTATAATCTTTACTGGATATCCTGTGATTGGATATCAGAACCGGCTTCAAGCATCTGGAACTTGCCTTGATAGTCCTCAAGATTCAAGAATCACGGCATGCGCATGGGACCCAAGGATCAAGGGCGAGTTTTTTCATCAAACAACCTTCAGCATCAGCTTGTCCGTGGCCAAAAGCTTCATTCAAGACGTGCAGAAGCTAGTTGAGATTGAACCCAAATCCCTCTGTGGAGTAGAAATCTACAATGGAATCCTAATGCGCTATGTCACCGCATCAACTGCTTACCTTGGCAAACAAGTAGATGCAATTGACTTCGACTTCACTTATTACCGAAGCAAGGACCCCATGACGCCTAGGCTCCATGAAGGCATACTTGAAGAAATAGAGCAGTTGGCACTGTTTAAGTACGGAGCATTGCCACATTGGGGAAAGAATAGGAACATAGCCTTTGATGGGGTGATGAAGAAGTACAAACATGGTAAGGAGTTCTTGAGGATTAAGGAAGTGTATGATCCAATGGGGCTATTCTCAAGTGAATGGAGTGACCAGGTTCTTGGAATTAAGGGTGAGGTTAACTTAGTCAAGGAAGGGTGCGCCCTAGAAGGGTTGTGCATTTGCTCACAAGACATTCATTGTGCCCCAAGCAAGGGCTACTTCTGTAGACCGGGGAAAGTATTTAGGGATGCAAGGATCTGTACTCCGATCCATAATTAG

Protein Analysis

415

Amino Acids

47.18

Weight (kDa)

9.12

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALO PF04030 223 - 361 1.3e-09 D-arabinono-1,4-lactone oxidase
GULLO2-like_3rd PF22906 373 - 411 3.1e-24 L-gulonolactone oxidase 2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AasI GACNNNNNNGTC 1 cut(s) 154
Acc16I TGCGCA 1 cut(s) 637
Acc36I ACCTGC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 1195
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 2 cut(s) 290, 804
AclWI GGATC 4 cut(s) 659, 1040, 1231, 1232
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 2 cut(s) 62, 89
AcuI CTGAAG 2 cut(s) 390, 667
AcyI GRCGYC 1 cut(s) 884
AfaI GTAC 6 cut(s) 17, 58, 84, 941, 1004, 1231
AfiI CCNNNNNNNGG 8 cut(s) 319, 563, 871, 959, 987, 1137, 1180, 1181
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 6 cut(s) 208, 584, 621, 719, 746, 911
AjiI CACGTC 1 cut(s) 724
AjnI CCWGG 1 cut(s) 1080
AluBI AGCT 3 cut(s) 693, 711, 733
AluI AGCT 3 cut(s) 693, 711, 733
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 4 cut(s) 659, 1040, 1231, 1232
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 1 cut(s) 702
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 62, 89
ArsI GACNNNNNNTTYG 2 cut(s) 156, 188
AseI ATTAAT 1 cut(s) 114
AspA2I CCTAGG 1 cut(s) 887
AspLEI GCGC 3 cut(s) 638, 795, 1130
AspS9I GGNCC 3 cut(s) 213, 643, 874
AsuC2I CCSGG 1 cut(s) 1200
AsuHPI GGTGA 3 cut(s) 793, 1003, 1112
AvaII GGWCC 3 cut(s) 213, 643, 874
AvrII CCTAGG 1 cut(s) 887
BaeGI GKGCMC 1 cut(s) 1174
BalI TGGCCA 1 cut(s) 704
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 289
BccI CCATC 3 cut(s) 224, 458, 980
BceAI ACGGC 2 cut(s) 447, 645
BciT130I CCWGG 1 cut(s) 1082
BciVI GTATCC 1 cut(s) 315
BcnI CCSGG 1 cut(s) 1200
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 4 cut(s) 309, 734, 888, 1133
BfmI CTRYAG 1 cut(s) 1192
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 315
BisI GCNGC 1 cut(s) 278
BlnI CCTAGG 1 cut(s) 887
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 2 cut(s) 1082, 1200
Bme18I GGWCC 3 cut(s) 213, 643, 874
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 213, 643, 874
BmiI GGNNCC 4 cut(s) 644, 645, 876, 893
BmrFI CCNGG 2 cut(s) 1082, 1200
BmsI GCATC 7 cut(s) 448, 502, 596, 696, 815, 826, 1207
BpiI GAAGAC 1 cut(s) 152
BpuEI CTTGAG 3 cut(s) 597, 1045, 1048
BpuMI CCSGG 1 cut(s) 1200
BsaHI GRCGYC 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 647, 699, 820, 887, 1199
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
Bsc4I CCNNNNNNNGG 8 cut(s) 319, 563, 871, 959, 987, 1137, 1180, 1181
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 2 cut(s) 420, 553
Bse3DI GCAATG 1 cut(s) 947
BseAI TCCGGA 1 cut(s) 362
BseBI CCWGG 1 cut(s) 1082
BseDI CCNNGG 5 cut(s) 647, 699, 820, 887, 1199
BseGI GGATG 2 cut(s) 359, 1222
BseLI CCNNNNNNNGG 8 cut(s) 319, 563, 871, 959, 987, 1137, 1180, 1181
BseMI GCAATG 1 cut(s) 947
BseNI ACTGG 2 cut(s) 420, 553
BseRI GAGGAG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 746
BshFI GGCC 1 cut(s) 704
BsiSI CCGG 3 cut(s) 363, 577, 1199
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 8 cut(s) 319, 563, 871, 959, 987, 1137, 1180, 1181
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 656
BsnI GGCC 1 cut(s) 704
Bsp1286I GDGCHC 1 cut(s) 1174
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
BspACI CCGC 2 cut(s) 290, 804
BspANI GGCC 1 cut(s) 704
BspEI TCCGGA 1 cut(s) 362
BspLI GGNNCC 4 cut(s) 644, 645, 876, 893
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 4 cut(s) 659, 1040, 1231, 1232
BspTI CTTAAG 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 947
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 2 cut(s) 420, 553
BssAI RCCGGY 1 cut(s) 576
BssECI CCNNGG 5 cut(s) 647, 699, 820, 887, 1199
BssMI GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
BssNI GRCGYC 1 cut(s) 884
BssT1I CCWWGG 3 cut(s) 647, 820, 887
Bst2UI CCWGG 1 cut(s) 1082
Bst4CI ACNGT 2 cut(s) 15, 933
BstACI GRCGYC 1 cut(s) 884
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 812
BstC8I GCNNGC 4 cut(s) 137, 275, 314, 634
BstDEI CTNAG 2 cut(s) 159, 1111
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 2 cut(s) 359, 1222
BstHHI GCGC 3 cut(s) 638, 795, 1130
BstKTI GATC 6 cut(s) 256, 343, 654, 1048, 1227, 1239
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
BstMWI GCNNNNNNNGC 1 cut(s) 812
BstNI CCWGG 1 cut(s) 1082
BstNSI RCATGY 1 cut(s) 636
BstSCI CCNGG 2 cut(s) 1080, 1198
BstSFI CTRYAG 1 cut(s) 1192
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 1224
BstXI CCANNNNNNTGG 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 1224
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 704
BtgI CCRYGG 1 cut(s) 699
BtgZI GCGATG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 2 cut(s) 359, 1222
BtsIMutI CAGTG 2 cut(s) 413, 929
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 4 cut(s) 137, 275, 314, 634
CfoI GCGC 3 cut(s) 638, 795, 1130
Cfr10I RCCGGY 1 cut(s) 576
Cfr13I GGNCC 3 cut(s) 213, 643, 874
CseI GACGC 1 cut(s) 892
CsiI ACCWGGT 1 cut(s) 1080
Csp6I GTAC 6 cut(s) 16, 57, 83, 940, 1003, 1230
CviAII CATG 7 cut(s) 202, 281, 633, 639, 880, 896, 1010
CviQI GTAC 6 cut(s) 16, 57, 83, 940, 1003, 1230
DdeI CTNAG 2 cut(s) 159, 1111
DpnI GATC 6 cut(s) 255, 342, 653, 1047, 1226, 1238
DpnII GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
DraI TTTAAA 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 702
Eco130I CCWWGG 3 cut(s) 647, 820, 887
Eco32I GATATC 2 cut(s) 554, 569
Eco47I GGWCC 3 cut(s) 213, 643, 874
Eco57I CTGAAG 2 cut(s) 390, 667
EcoO109I RGGNCCY 2 cut(s) 643, 874
EcoRII CCWGG 1 cut(s) 1080
EcoRV GATATC 2 cut(s) 554, 569
EcoT14I CCWWGG 3 cut(s) 647, 820, 887
ErhI CCWWGG 3 cut(s) 647, 820, 887
FaeI CATG 7 cut(s) 205, 284, 636, 642, 883, 899, 1013
FalI AAGNNNNNCTT 6 cut(s) 891, 923, 1007, 1039, 1172, 1204
FaqI GGGAC 1 cut(s) 656
FatI CATG 7 cut(s) 201, 280, 632, 638, 879, 895, 1009
FblI GTMKAC 1 cut(s) 1195
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 2 cut(s) 346, 1229
Fsp4HI GCNGC 1 cut(s) 278
FspAI RTGCGCAY 1 cut(s) 637
FspBI CTAG 4 cut(s) 309, 734, 888, 1133
FspI TGCGCA 1 cut(s) 637
GlaI GCGC 3 cut(s) 637, 794, 1129
GluI GCNGC 1 cut(s) 278
HaeIII GGCC 1 cut(s) 704
HapII CCGG 3 cut(s) 363, 577, 1199
HgaI GACGC 1 cut(s) 892
HhaI GCGC 3 cut(s) 638, 795, 1130
Hin1I GRCGYC 1 cut(s) 884
Hin1II CATG 7 cut(s) 205, 284, 636, 642, 883, 899, 1013
Hin6I GCGC 3 cut(s) 636, 793, 1128
HinP1I GCGC 3 cut(s) 636, 793, 1128
HincII GTYRAC 1 cut(s) 1108
HindII GTYRAC 1 cut(s) 1108
HindIII AAGCTT 1 cut(s) 709
HinfI GANTC 5 cut(s) 239, 446, 617, 624, 783
HpaI GTTAAC 1 cut(s) 1108
HpaII CCGG 3 cut(s) 363, 577, 1199
HphI GGTGA 3 cut(s) 793, 1003, 1112
Hpy166II GTNNAC 2 cut(s) 1108, 1196
Hpy188I TCNGA 4 cut(s) 244, 511, 573, 1236
Hpy188III TCNNGA 7 cut(s) 208, 363, 591, 614, 621, 719, 1024
Hpy8I GTNNAC 2 cut(s) 1108, 1196
HpyAV CCTTC 6 cut(s) 395, 414, 691, 893, 1115, 1130
HpyCH4III ACNGT 2 cut(s) 15, 933
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 5 cut(s) 413, 727, 839, 1146, 1220
HpyF10VI GCNNNNNNNGC 1 cut(s) 812
HpyF3I CTNAG 2 cut(s) 159, 1111
HpySE526I ACGT 1 cut(s) 723
Hsp92I GRCGYC 1 cut(s) 884
Hsp92II CATG 7 cut(s) 205, 284, 636, 642, 883, 899, 1013
HspAI GCGC 3 cut(s) 636, 793, 1128
KflI GGGWCCC 1 cut(s) 643
Kpn2I TCCGGA 1 cut(s) 362
KspAI GTTAAC 1 cut(s) 1108
Kzo9I GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
LmnI GCTCC 2 cut(s) 897, 944
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 7 cut(s) 448, 502, 596, 696, 815, 826, 1207
MabI ACCWGGT 1 cut(s) 1080
MaeI CTAG 4 cut(s) 309, 734, 888, 1133
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 4 cut(s) 181, 490, 799, 1076
MalI GATC 6 cut(s) 255, 342, 653, 1047, 1226, 1238
MboI GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
MboII GAAGA 3 cut(s) 157, 923, 1009
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 1 cut(s) 1224
MhlI GDGCHC 1 cut(s) 1174
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 8 cut(s) 25, 48, 62, 89, 115, 840, 1092, 1243
MluNI TGGCCA 1 cut(s) 704
MnlI CCTC 7 cut(s) 29, 204, 361, 621, 767, 1020, 1096
Mox20I TGGCCA 1 cut(s) 704
MroI TCCGGA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 704
MseI TTAA 7 cut(s) 66, 114, 264, 936, 1032, 1095, 1107
MslI CAYNNNNRTG 1 cut(s) 637
Msp20I TGGCCA 1 cut(s) 704
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 3 cut(s) 363, 577, 1199
MspR9I CCNGG 2 cut(s) 1082, 1200
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 1 cut(s) 1082
MwoI GCNNNNNNNGC 1 cut(s) 812
NciI CCSGG 1 cut(s) 1200
NdeII GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
NlaIII CATG 7 cut(s) 205, 284, 636, 642, 883, 899, 1013
NlaIV GGNNCC 4 cut(s) 644, 645, 876, 893
NmuCI GTSAC 3 cut(s) 490, 799, 1076
NsbI TGCGCA 1 cut(s) 637
NspI RCATGY 1 cut(s) 636
PaeI GCATGC 1 cut(s) 636
PfeI GAWTC 5 cut(s) 239, 446, 617, 624, 783
PkrI GCNGC 1 cut(s) 279
PpuMI RGGWCCY 2 cut(s) 643, 874
PshBI ATTAAT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 425
Psp5II RGGWCCY 2 cut(s) 643, 874
Psp6I CCWGG 1 cut(s) 1080
PspGI CCWGG 1 cut(s) 1080
PspN4I GGNNCC 4 cut(s) 644, 645, 876, 893
PspPI GGNCC 3 cut(s) 213, 643, 874
PspPPI RGGWCCY 2 cut(s) 643, 874
PsuI RGATCY 1 cut(s) 1224
RsaI GTAC 6 cut(s) 17, 58, 84, 941, 1004, 1231
RsaNI GTAC 6 cut(s) 16, 57, 83, 940, 1003, 1230
RseI CAYNNNNRTG 1 cut(s) 637
SaqAI TTAA 7 cut(s) 66, 114, 264, 936, 1032, 1095, 1107
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 6 cut(s) 253, 340, 651, 1045, 1224, 1236
Sau96I GGNCC 3 cut(s) 213, 643, 874
ScrFI CCNGG 2 cut(s) 1082, 1200
SduI GDGCHC 1 cut(s) 1174
SexAI ACCWGGT 1 cut(s) 1080
SfaNI GCATC 7 cut(s) 448, 502, 596, 696, 815, 826, 1207
SfcI CTRYAG 1 cut(s) 1192
SinI GGWCC 3 cut(s) 213, 643, 874
SmiMI CAYNNNNRTG 1 cut(s) 637
SmlI CTYRAG 4 cut(s) 263, 612, 1024, 1063
SmoI CTYRAG 4 cut(s) 263, 612, 1024, 1063
SphI GCATGC 1 cut(s) 636
Sse9I AATT 8 cut(s) 25, 48, 62, 89, 115, 840, 1092, 1243
SsiI CCGC 2 cut(s) 290, 804
SspMI CTAG 4 cut(s) 309, 734, 888, 1133
StyD4I CCNGG 2 cut(s) 1080, 1198
StyI CCWWGG 3 cut(s) 647, 820, 887
TaaI ACNGT 2 cut(s) 15, 933
TaiI ACGT 1 cut(s) 726
TaqI TCGA 3 cut(s) 331, 394, 849
TasI AATT 8 cut(s) 25, 48, 62, 89, 115, 840, 1092, 1243
TatI WGTACW 2 cut(s) 1002, 1229
TfiI GAWTC 5 cut(s) 239, 446, 617, 624, 783
Tru1I TTAA 7 cut(s) 66, 114, 264, 936, 1032, 1095, 1107
Tru9I TTAA 7 cut(s) 66, 114, 264, 936, 1032, 1095, 1107
TscAI CASTG 2 cut(s) 420, 936
TseFI GTSAC 3 cut(s) 490, 799, 1076
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 3 cut(s) 490, 799, 1076
TspDTI ATGAA 7 cut(s) 17, 158, 659, 703, 912, 1010, 1154
TspGWI ACGGA 2 cut(s) 688, 957
TspRI CASTG 2 cut(s) 420, 936
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 3 cut(s) 213, 643, 874
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 2 cut(s) 62, 89
XceI RCATGY 1 cut(s) 636
XmaJI CCTAGG 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 1195
XspI CTAG 4 cut(s) 309, 734, 888, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.