Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Forward (+)

54385285 .. 54386465

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019622

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCATTTCACAGATACTATGCTCAATGTTACTCTAAACCTACAACCTATGAGAGGTCCATCACATATTCGAGCAAGAACGATCCTGACATGGCAGATCAGAACCGGCTTCAAGCATCCGGAACTTTCCTTGGTAGTCTTGAAGACTCGAGAATCAAGGCATGCGCATGGGACTCAAGGATCAAGGAAATCTACAAAGGAATCCTAATGCGCTATGACACCACATCAACTGCTTACCTTGGCAAACAAGAAGATGCAATTGACTTCGACATTACTTATTTCCGGAGTAAGGACTTCATGACTCCTAGGCTCCATGAAGGCATACTTGAAGAAATAGAGCAATTGGCACTGTTTAAGTACGGAGCACTGCCACATTGGGGAAAGAATAGAAACATAGCCTTTGATGGGGTGATGAAGTACAAAAATGGTGAGGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

147

Amino Acids

17.06

Weight (kDa)

6.3

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AccIII	TCCGGA	2 cut(s)	119, 282
AclWI	GGATC	2 cut(s)	77, 188
AfaI	GTAC	2 cut(s)	359, 419
AfiI	CCNNNNNNNGG	4 cut(s)	54, 289, 377, 405
AgsI	TTSAA	3 cut(s)	113, 143, 329
Alw21I	GWGCWC	1 cut(s)	367
AlwI	GGATC	2 cut(s)	77, 188
Ama87I	CYCGRG	1 cut(s)	148
Aor13HI	TCCGGA	2 cut(s)	119, 282
AspA2I	CCTAGG	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	167, 213
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	421, 440
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	57
AvrII	CCTAGG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	2 cut(s)	68, 398
BfaI	CTAG	1 cut(s)	306
BlnI	CCTAGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	311
BmsI	GCATC	2 cut(s)	125, 244
BpiI	GAAGAC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	130, 238, 305
BsaWI	WCCGGW	2 cut(s)	119, 282
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 289, 377, 405
Bse118I	RCCGGY	1 cut(s)	105
BseAI	TCCGGA	2 cut(s)	119, 282
BseDI	CCNNGG	3 cut(s)	130, 238, 305
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	4 cut(s)	54, 289, 377, 405
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	106, 120, 283
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	4 cut(s)	54, 289, 377, 405
BsmFI	GGGAC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp13I	TCCGGA	2 cut(s)	119, 282
Bsp143I	GATC	3 cut(s)	82, 97, 180
BspEI	TCCGGA	2 cut(s)	119, 282
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	77, 188
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	130, 238, 305
BssMI	GATC	3 cut(s)	82, 97, 180
BssT1I	CCWWGG	3 cut(s)	130, 238, 305
Bst4CI	ACNGT	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	167, 213
BstKTI	GATC	3 cut(s)	85, 100, 183
BstMBI	GATC	3 cut(s)	82, 97, 180
BstNSI	RCATGY	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	116
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	2 cut(s)	347, 365
Cac8I	GCNNGC	1 cut(s)	163
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	2 cut(s)	167, 213
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	358, 418
CviAII	CATG	5 cut(s)	91, 162, 168, 298, 314
CviJI	RGCY	3 cut(s)	109, 310, 398
CviKI_1	RGCY	3 cut(s)	109, 310, 398
CviQI	GTAC	2 cut(s)	358, 418
DpnI	GATC	3 cut(s)	84, 99, 182
DpnII	GATC	3 cut(s)	82, 97, 180
Eco130I	CCWWGG	3 cut(s)	130, 238, 305
Eco47I	GGWCC	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoT14I	CCWWGG	3 cut(s)	130, 238, 305
ErhI	CCWWGG	3 cut(s)	130, 238, 305
FaeI	CATG	5 cut(s)	94, 165, 171, 301, 317
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	5 cut(s)	90, 161, 167, 297, 313
FokI	GGATG	1 cut(s)	103
FspAI	RTGCGCAY	1 cut(s)	166
FspBI	CTAG	1 cut(s)	306
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	2 cut(s)	166, 212
HapII	CCGG	3 cut(s)	106, 120, 283
HhaI	GCGC	2 cut(s)	167, 213
Hin1II	CATG	5 cut(s)	94, 165, 171, 301, 317
Hin6I	GCGC	2 cut(s)	165, 211
HinP1I	GCGC	2 cut(s)	165, 211
HinfI	GANTC	5 cut(s)	146, 153, 173, 201, 301
HpaII	CCGG	3 cut(s)	106, 120, 283
HphI	GGTGA	2 cut(s)	421, 440
Hpy188I	TCNGA	2 cut(s)	102, 440
Hpy188III	TCNNGA	6 cut(s)	86, 120, 140, 150, 283, 298
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	94, 165, 171, 301, 317
HspAI	GCGC	2 cut(s)	165, 211
Kpn2I	TCCGGA	2 cut(s)	119, 282
Kzo9I	GATC	3 cut(s)	82, 97, 180
LmnI	GCTCC	2 cut(s)	315, 362
LpnPI	CCDG	4 cut(s)	99, 119, 133, 296
LweI	GCATC	2 cut(s)	125, 244
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	84, 99, 182
MboI	GATC	3 cut(s)	82, 97, 180
MboII	GAAGA	3 cut(s)	155, 263, 341
MfeI	CAATTG	2 cut(s)	258, 341
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	258, 341
MlyI	GAGTC	3 cut(s)	140, 167, 295
MnlI	CCTC	2 cut(s)	48, 424
MroI	TCCGGA	2 cut(s)	119, 282
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	166
MspI	CCGG	3 cut(s)	106, 120, 283
MunI	CAATTG	2 cut(s)	258, 341
NdeII	GATC	3 cut(s)	82, 97, 180
NlaIII	CATG	5 cut(s)	94, 165, 171, 301, 317
NlaIV	GGNNCC	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	166
NspI	RCATGY	1 cut(s)	165
PaeI	GCATGC	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	148
PagI	TCATGA	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	153, 201
PleI	GAGTC	3 cut(s)	140, 167, 295
PpsI	GAGTC	3 cut(s)	140, 167, 295
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	359, 419
RsaNI	GTAC	2 cut(s)	358, 418
RseI	CAYNNNNRTG	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	82, 97, 180
Sau96I	GGNCC	1 cut(s)	57
SchI	GAGTC	3 cut(s)	140, 167, 295
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	4 cut(s)	43, 50, 59, 240
SfaNI	GCATC	2 cut(s)	125, 244
Sfr274I	CTCGAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	166
SmlI	CTYRAG	2 cut(s)	148, 175
SmoI	CTYRAG	2 cut(s)	148, 175
SphI	GCATGC	1 cut(s)	165
Sse9I	AATT	2 cut(s)	258, 341
SspMI	CTAG	1 cut(s)	306
StyI	CCWWGG	3 cut(s)	130, 238, 305
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	71, 149, 267
TasI	AATT	2 cut(s)	258, 341
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	153, 201
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	354, 372
TspDTI	ATGAA	3 cut(s)	286, 330, 428
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	354, 372
VpaK11BI	GGWCC	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	52
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	148
XmaJI	CCTAGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.