Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Forward (+)

55879041 .. 55879346

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG393900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTCAGCATCAGCTTGTCTCTGGTCAAGAGCTTCATTCAAGATGTGCACAAGCTAGTTGAGATCGAACCCAAATCCCTCTGTGGAGTAGAAATCTACAAAGGAATCCTAATGCGCTATGACACCACATCAACTGCTTACCTTGGCAAACAAGAAGATGCAATTGACTTTGACATCACGTATTACCGAAGCAAGGACTTCATGACTCCTAGGCTCCATGAAGGCATACTTGAAGAAATAGAGCAATTGGCACTGTTTAACTACCGATCGGAGTACTGCCACATTGGGGAAAGAATAGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

101

Amino Acids

11.84

Weight (kDa)

4.96

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	193, 286
AgsI	TTSAA	2 cut(s)	41, 233
AluBI	AGCT	3 cut(s)	15, 33, 55
AluI	AGCT	3 cut(s)	15, 33, 55
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	47
ApaLI	GTGCAC	1 cut(s)	47
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	117
AvrII	CCTAGG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	56, 210
BlnI	CCTAGG	1 cut(s)	209
BmcAI	AGTACT	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	18, 148
BsaAI	YACGTR	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	142, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 286
BseDI	CCNNGG	2 cut(s)	142, 209
BseLI	CCNNNNNNNGG	2 cut(s)	193, 286
BseSI	GKGCMC	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	193, 286
BsmAI	GTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	63, 266
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	215
BssECI	CCNNGG	2 cut(s)	142, 209
BssMI	GATC	2 cut(s)	63, 266
BssT1I	CCWWGG	2 cut(s)	142, 209
Bst4CI	ACNGT	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	66, 269
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	63, 266
BstMCI	CGRYCG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	2 cut(s)	202, 218
CviJI	RGCY	4 cut(s)	15, 33, 55, 214
CviKI_1	RGCY	4 cut(s)	15, 33, 55, 214
CviQI	GTAC	1 cut(s)	274
DpnI	GATC	2 cut(s)	65, 268
DpnII	GATC	2 cut(s)	63, 266
Eco130I	CCWWGG	2 cut(s)	142, 209
EcoT14I	CCWWGG	2 cut(s)	142, 209
ErhI	CCWWGG	2 cut(s)	142, 209
FaeI	CATG	2 cut(s)	205, 221
FaiI	YATR	5 cut(s)	120, 203, 219, 227, 304
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	2 cut(s)	201, 217
FspBI	CTAG	2 cut(s)	56, 210
GlaI	GCGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	205, 221
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	105, 205
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	28, 41, 202
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	49, 161
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	205, 221
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	63, 266
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	1 cut(s)	8
LweI	GCATC	2 cut(s)	18, 148
MaeI	CTAG	2 cut(s)	56, 210
MaeII	ACGT	1 cut(s)	179
MalI	GATC	2 cut(s)	65, 268
MboI	GATC	2 cut(s)	63, 266
MboII	GAAGA	2 cut(s)	167, 245
MfeI	CAATTG	2 cut(s)	162, 245
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	162, 245
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	258
MunI	CAATTG	2 cut(s)	162, 245
NdeII	GATC	2 cut(s)	63, 266
NlaIII	CATG	2 cut(s)	205, 221
NlaIV	GGNNCC	1 cut(s)	215
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	105
Ple19I	CGATCG	1 cut(s)	269
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	63, 266
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	5 cut(s)	17, 35, 57, 144, 182
SfaNI	GCATC	2 cut(s)	18, 148
Sse9I	AATT	2 cut(s)	162, 245
SspMI	CTAG	2 cut(s)	56, 210
StyI	CCWWGG	2 cut(s)	142, 209
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	162, 245
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	258
TspDTI	ATGAA	3 cut(s)	25, 190, 234
TspRI	CASTG	1 cut(s)	258
VneI	GTGCAC	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	209
XspI	CTAG	2 cut(s)	56, 210
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.