Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

64222749 .. 64226700

Gene Structure 3952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGGGGCCCAATCGAGACGTACATCCCATAGCCCGATATCCAAGCTATGCTACGGTAGTCGAAAGCGACCAATACCTCTCCGGGAAGCCACTTTCCCACCTTGCAAAGTTGCCTTCACAACATGGCTTCAAGACTAGAATAGTGGGTTCTTGTCCCACATCTAAGAAAATTTTCCTCCAATCCCGTATTCTCGGGAAGGAGATTCAAGTCACCATCAAGAAGGATCAAACCAGGAAAGAAGCCTATAGAAGGTTCTACTTCGCCACAAACTCGGGACCGATTCAAGAAAGCCCTCATGGAAGTATTGAGTCAAGGCCGTTGATCACTATAGCCTGCATTAGCATGTGTTTTTTTATGTGTCCGAACTTGTTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.26

Weight (kDa)

9.81

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	171
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	133, 209, 287
AjnI	CCWGG	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	234
Ama87I	CYCGRG	2 cut(s)	194, 274
AoxI	GGCC	2 cut(s)	8, 317
ApaI	GGGCCC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	171
Asp700I	GAANNNNTTC	2 cut(s)	173, 371
AspS9I	GGNCC	3 cut(s)	8, 9, 278
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	2 cut(s)	194, 274
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	12
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	2 cut(s)	247, 330
Bme1390I	CCNGG	2 cut(s)	85, 235
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	2 cut(s)	194, 274
BmgT120I	GGNCC	3 cut(s)	8, 9, 278
BmiI	GGNNCC	3 cut(s)	9, 10, 279
BmrFI	CCNGG	2 cut(s)	85, 235
BpuMI	CCSGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	12
BshFI	GGCC	2 cut(s)	10, 319
BsiHKCI	CYCGRG	2 cut(s)	194, 274
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	141, 291
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	2 cut(s)	141, 291
BsnI	GGCC	2 cut(s)	10, 319
BsoBI	CYCGRG	2 cut(s)	194, 274
Bsp120I	GGGCCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	226, 324
BspANI	GGCC	2 cut(s)	10, 319
BspLI	GGNNCC	3 cut(s)	9, 10, 279
BspPI	GGATC	1 cut(s)	234
BssMI	GATC	2 cut(s)	226, 324
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	165
BstENI	CCTNNNNNAGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	229, 327
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	226, 324
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	83, 233
BstSFI	CTRYAG	2 cut(s)	247, 330
BstSLI	GKGCMC	1 cut(s)	12
BsuRI	GGCC	2 cut(s)	10, 319
BtsCI	GGATG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	8, 9, 278
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	3 cut(s)	125, 299, 346
CviJI	RGCY	9 cut(s)	10, 35, 48, 91, 129, 245, 294, 319, 335
CviKI_1	RGCY	9 cut(s)	10, 35, 48, 91, 129, 245, 294, 319, 335
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	228, 326
DpnII	GATC	2 cut(s)	226, 324
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	194, 274
EcoNI	CCTNNNNNAGG	1 cut(s)	250
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	128, 302, 349
FaiI	YATR	8 cut(s)	32, 51, 126, 249, 300, 332, 347, 359
FaqI	GGGAC	2 cut(s)	141, 291
FatI	CATG	3 cut(s)	124, 298, 345
FbaI	TGATCA	1 cut(s)	324
FokI	GGATG	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	10, 319
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	3 cut(s)	128, 302, 349
HinfI	GANTC	3 cut(s)	205, 283, 311
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	6 cut(s)	17, 133, 196, 220, 276, 287
HpyAV	CCTTC	4 cut(s)	126, 193, 217, 246
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	107, 339
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	128, 302, 349
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	226, 324
LpnPI	CCDG	4 cut(s)	97, 220, 247, 349
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	228, 326
MboI	GATC	2 cut(s)	226, 324
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	3 cut(s)	89, 188, 306
MroXI	GAANNNNTTC	2 cut(s)	173, 371
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	85, 235
MvaI	CCWGG	1 cut(s)	235
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	226, 324
NlaIII	CATG	3 cut(s)	128, 302, 349
NlaIV	GGNNCC	3 cut(s)	9, 10, 279
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	349
PdmI	GAANNNNTTC	2 cut(s)	173, 371
PfeI	GAWTC	2 cut(s)	205, 283
PfoI	TCCNGGA	1 cut(s)	83
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	3 cut(s)	9, 10, 279
PspOMI	GGGCCC	1 cut(s)	8
PspPI	GGNCC	3 cut(s)	8, 9, 278
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	344
Sau3AI	GATC	2 cut(s)	226, 324
Sau96I	GGNCC	3 cut(s)	8, 9, 278
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	85, 235
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	5 cut(s)	24, 50, 81, 105, 257
SfcI	CTRYAG	2 cut(s)	247, 330
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	171
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	83, 233
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	16, 63
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	205, 283
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	278
XagI	CCTNNNNNAGG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	2 cut(s)	173, 371
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.