Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

17766360 .. 17767934

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTTTAAGCGAGCGATCACATACTTGAGCAAGAGCGACTCAGATTTGGGAGACCAAGTAGTTAGGTTTGGCAAGGAACATGAGTTTGCAGACATCATATGGTACCCTAGCCAGCACAAGGCTGTCTATCGGATGGATGATCGTGTCTCTACAAATACCTCTGGCAATGGCCTATATGACTTCATTCCTTTTCGAGCCACACCTTCACTTGCTCTTGCAGTTATCAGAGCCACAGAGGAGAACCAAGAATCCCAGAGTGATGCTGATGGGAAATGCACTAGTGCAAAGTTGGTTACATCTACTCTCATTACAAATGCTTATGGTTTGACAAACAATGGTCTGTTTTTTACTGGCTATCCTGTTATTGGATATCAGCATCGGCTTCAATCATCCGGGACTTGCCTACATAGTCTTGAGGATTCAAGGATCACAGCATGCCCATGGGACCCCAAAATCAAGGGTGAGTTTTTTCATCAAACAACATTCAGCATTAACTTGTCTCTGGCTAAGAACTTCATTCAAGATGTGCAAAAGCTAGTTGAGATTGAACCGAAAGCGCTATGTGGAGTAGAAATCTACAACGGGATCCTAATGCGCTATGTTACTACCTCAAGCGCTTACCTTGGCAAGCAAGAGGATGCAGTCGACTTTGATATCACATATTATCGTAGTAAAGACCCAATGACACCTAGACTTTATGAAGGAATACTTGAAGAAATAGAGCAACTTGCTCTTGTTAAGTATAAAGCATTGCCTCATTGGGGAAAAAATCGGAACATAGCGTTTGATGGAGTGATGAACAAGTACAAGGGTTCTGAAGAGTTCTTGAGGGTCAAAGATGTTTATGATCCAATGGGGCTCTTCTCTAGTGAATGGACAGACCAAGTTCTTGGACTTAAGGATGGGGTGACAATAGTAAAGGAAGGGTGTGCACTAGAAGGGTTGTGCATCTGCTCAAAAGACATTCATTGTGCCCCAAGCAAAGGCTATTTCTGTAGGCCTGGTAAAGTTTTCAACGATGCAAGGATTTGTACCCTTGTGACTACGAACAAAGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

354

Amino Acids

39.64

Weight (kDa)

6.2

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALO	PF04030	157 - 295	7.2e-10	D-arabinono-1,4-lactone oxidase
GULLO2-like_3rd	PF22906	307 - 345	4.4e-24	L-gulonolactone oxidase 2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	102
AccB1I	GGYRCC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	645
AclWI	GGATC	4 cut(s)	434, 580, 593, 842
AcuI	CTGAAG	1 cut(s)	837
AfaI	GTAC	3 cut(s)	104, 806, 1033
AfeI	AGCGCT	2 cut(s)	558, 616
AfiI	CCNNNNNNNGG	4 cut(s)	118, 365, 761, 983
AflII	CTTAAG	1 cut(s)	896
AgsI	TTSAA	6 cut(s)	386, 423, 521, 548, 713, 1015
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	1000
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	535, 1055
AluI	AGCT	2 cut(s)	535, 1055
Alw21I	GWGCWC	1 cut(s)	934
Alw26I	GTCTC	3 cut(s)	45, 151, 504
Alw44I	GTGCAC	1 cut(s)	930
AlwI	GGATC	4 cut(s)	434, 580, 593, 842
Aor51HI	AGCGCT	2 cut(s)	558, 616
AoxI	GGCC	2 cut(s)	169, 998
ApaLI	GTGCAC	1 cut(s)	930
Asp718I	GGTACC	1 cut(s)	102
AspLEI	GCGC	3 cut(s)	559, 597, 617
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	473, 919
AvaII	GGWCC	1 cut(s)	445
BaeGI	GKGCMC	2 cut(s)	934, 976
BamHI	GGATCC	1 cut(s)	585
BanI	GGYRCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	934
BccI	CCATC	4 cut(s)	127, 260, 782, 896
BciT130I	CCWGG	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	3 cut(s)	45, 151, 504
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	7 cut(s)	108, 279, 536, 690, 867, 935, 1056
BfmI	CTRYAG	1 cut(s)	994
BfoI	RGCGCY	2 cut(s)	560, 618
BfrI	CTTAAG	1 cut(s)	896
Bme1390I	CCNGG	2 cut(s)	394, 1002
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	104, 446, 447, 587
BmrFI	CCNGG	2 cut(s)	394, 1002
BmsI	GCATC	5 cut(s)	250, 385, 628, 957, 1009
BpuEI	CTTGAG	4 cut(s)	46, 434, 595, 847
BpuMI	CCSGG	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	440, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 365, 761, 983
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	172, 749
BseBI	CCWGG	1 cut(s)	1002
BseDI	CCNNGG	2 cut(s)	440, 622
BseGI	GGATG	5 cut(s)	138, 142, 389, 643, 907
BseLI	CCNNNNNNNGG	4 cut(s)	118, 365, 761, 983
BseMI	GCAATG	2 cut(s)	172, 749
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	2 cut(s)	934, 976
BshFI	GGCC	2 cut(s)	171, 1000
BshNI	GGYRCC	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	934
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	409, 458
BslI	CCNNNNNNNGG	4 cut(s)	118, 365, 761, 983
BsmAI	GTCTC	3 cut(s)	45, 151, 504
BsmFI	GGGAC	2 cut(s)	409, 458
BsnI	GGCC	2 cut(s)	171, 1000
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	3 cut(s)	861, 934, 976
Bsp143I	GATC	5 cut(s)	15, 139, 426, 585, 847
Bsp19I	CCATGG	1 cut(s)	440
BspANI	GGCC	2 cut(s)	171, 1000
BspCNI	CTCAG	1 cut(s)	53
BspLI	GGNNCC	4 cut(s)	104, 446, 447, 587
BspPI	GGATC	4 cut(s)	434, 580, 593, 842
BspQI	GCTCTTC	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	102
BspTI	CTTAAG	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	172, 749
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	440, 622
BssMI	GATC	5 cut(s)	15, 139, 426, 585, 847
BssT1I	CCWWGG	2 cut(s)	440, 622
Bst2UI	CCWGG	1 cut(s)	1002
Bst6I	CTCTTC	2 cut(s)	813, 866
BstAFI	CTTAAG	1 cut(s)	896
BstC8I	GCNNGC	4 cut(s)	12, 113, 436, 629
BstDEI	CTNAG	2 cut(s)	40, 507
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	5 cut(s)	138, 142, 389, 643, 907
BstH2I	RGCGCY	2 cut(s)	560, 618
BstHHI	GCGC	3 cut(s)	559, 597, 617
BstKTI	GATC	5 cut(s)	18, 142, 429, 588, 850
BstMAI	GTCTC	3 cut(s)	45, 151, 504
BstMBI	GATC	5 cut(s)	15, 139, 426, 585, 847
BstNI	CCWGG	1 cut(s)	1002
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	392, 1000
BstSFI	CTRYAG	1 cut(s)	994
BstSLI	GKGCMC	2 cut(s)	934, 976
BstX2I	RGATCY	1 cut(s)	585
BstXI	CCANNNNNNTGG	1 cut(s)	890
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	2 cut(s)	171, 1000
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	5 cut(s)	138, 142, 389, 643, 907
Cac8I	GCNNGC	4 cut(s)	12, 113, 436, 629
CfoI	GCGC	3 cut(s)	559, 597, 617
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	3 cut(s)	103, 805, 1032
CviAII	CATG	3 cut(s)	80, 435, 441
CviQI	GTAC	3 cut(s)	103, 805, 1032
DdeI	CTNAG	2 cut(s)	40, 507
DpnI	GATC	5 cut(s)	17, 141, 428, 587, 849
DpnII	GATC	5 cut(s)	15, 139, 426, 585, 847
Eam1104I	CTCTTC	2 cut(s)	813, 866
EarI	CTCTTC	2 cut(s)	813, 866
Eco130I	CCWWGG	2 cut(s)	440, 622
Eco147I	AGGCCT	1 cut(s)	1000
Eco24I	GRGCYC	1 cut(s)	861
Eco31I	GGTCTC	1 cut(s)	45
Eco32I	GATATC	2 cut(s)	371, 655
Eco47I	GGWCC	1 cut(s)	445
Eco47III	AGCGCT	2 cut(s)	558, 616
Eco57I	CTGAAG	1 cut(s)	837
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	1000
EcoRV	GATATC	2 cut(s)	371, 655
EcoT14I	CCWWGG	2 cut(s)	440, 622
EcoT38I	GRGCYC	1 cut(s)	861
ErhI	CCWWGG	2 cut(s)	440, 622
FaeI	CATG	3 cut(s)	83, 438, 444
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FaqI	GGGAC	2 cut(s)	409, 458
FatI	CATG	3 cut(s)	79, 434, 440
FauNDI	CATATG	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	645
FokI	GGATG	5 cut(s)	145, 149, 376, 650, 914
FriOI	GRGCYC	1 cut(s)	861
FspBI	CTAG	7 cut(s)	108, 279, 536, 690, 867, 935, 1056
GlaI	GCGC	3 cut(s)	558, 596, 616
HaeII	RGCGCY	2 cut(s)	560, 618
HaeIII	GGCC	2 cut(s)	171, 1000
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	3 cut(s)	559, 597, 617
Hin1II	CATG	3 cut(s)	83, 438, 444
Hin6I	GCGC	3 cut(s)	557, 595, 615
HinP1I	GCGC	3 cut(s)	557, 595, 615
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HinfI	GANTC	3 cut(s)	38, 248, 419
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	2 cut(s)	473, 919
Hpy166II	GTNNAC	2 cut(s)	646, 932
Hpy188I	TCNGA	5 cut(s)	43, 132, 227, 774, 817
Hpy188III	TCNNGA	3 cut(s)	413, 521, 826
Hpy8I	GTNNAC	2 cut(s)	646, 932
HpyAV	CCTTC	4 cut(s)	213, 695, 917, 932
HpyCH4V	TGCA	9 cut(s)	89, 218, 276, 284, 529, 641, 932, 948, 1022
HpyF3I	CTNAG	2 cut(s)	40, 507
Hsp92II	CATG	3 cut(s)	83, 438, 444
HspAI	GCGC	3 cut(s)	557, 595, 615
KflI	GGGWCCC	1 cut(s)	445
KpnI	GGTACC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	15, 139, 426, 585, 847
LguI	GCTCTTC	1 cut(s)	866
LpnPI	CCDG	9 cut(s)	125, 147, 266, 336, 372, 406, 488, 987, 1014
LweI	GCATC	5 cut(s)	250, 385, 628, 957, 1009
MaeI	CTAG	7 cut(s)	108, 279, 536, 690, 867, 935, 1056
MaeIII	GTNAC	4 cut(s)	292, 601, 907, 1039
MalI	GATC	5 cut(s)	17, 141, 428, 587, 849
MboI	GATC	5 cut(s)	15, 139, 426, 585, 847
MboII	GAAGA	3 cut(s)	725, 830, 853
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	861, 934, 976
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	7 cut(s)	169, 229, 409, 619, 628, 765, 822
MseI	TTAA	5 cut(s)	6, 492, 738, 897, 1060
MslI	CAYNNNNRTG	1 cut(s)	439
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	394, 1002
MvaI	CCWGG	1 cut(s)	1002
NciI	CCSGG	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	5 cut(s)	15, 139, 426, 585, 847
NlaIII	CATG	3 cut(s)	83, 438, 444
NlaIV	GGNNCC	4 cut(s)	104, 446, 447, 587
NmuCI	GTSAC	2 cut(s)	907, 1039
NspI	RCATGY	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	1000
PciSI	GCTCTTC	1 cut(s)	866
PfeI	GAWTC	2 cut(s)	248, 419
PfoI	TCCNGGA	1 cut(s)	392
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	1000
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	4 cut(s)	104, 446, 447, 587
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	3 cut(s)	104, 806, 1033
RsaNI	GTAC	3 cut(s)	103, 805, 1032
RseI	CAYNNNNRTG	1 cut(s)	439
SalI	GTCGAC	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	866
SaqAI	TTAA	5 cut(s)	6, 492, 738, 897, 1060
Sau3AI	GATC	5 cut(s)	15, 139, 426, 585, 847
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	394, 1002
SduI	GDGCHC	3 cut(s)	861, 934, 976
SetI	ASST	8 cut(s)	68, 161, 205, 537, 611, 624, 691, 1057
SfaNI	GCATC	5 cut(s)	250, 385, 628, 957, 1009
SfcI	CTRYAG	1 cut(s)	994
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	439
SmlI	CTYRAG	5 cut(s)	25, 413, 610, 826, 896
SmoI	CTYRAG	5 cut(s)	25, 413, 610, 826, 896
SpeI	ACTAGT	1 cut(s)	278
SphI	GCATGC	1 cut(s)	438
SseBI	AGGCCT	1 cut(s)	1000
SspMI	CTAG	7 cut(s)	108, 279, 536, 690, 867, 935, 1056
StuI	AGGCCT	1 cut(s)	1000
StyD4I	CCNGG	2 cut(s)	392, 1000
StyI	CCWWGG	2 cut(s)	440, 622
TaqI	TCGA	2 cut(s)	193, 645
TatI	WGTACW	1 cut(s)	804
TfiI	GAWTC	2 cut(s)	248, 419
Tru1I	TTAA	5 cut(s)	6, 492, 738, 897, 1060
Tru9I	TTAA	5 cut(s)	6, 492, 738, 897, 1060
TseFI	GTSAC	2 cut(s)	907, 1039
Tsp45I	GTSAC	2 cut(s)	907, 1039
TspDTI	ATGAA	6 cut(s)	172, 461, 505, 714, 812, 956
Vha464I	CTTAAG	1 cut(s)	896
VneI	GTGCAC	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	445
XceI	RCATGY	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	7 cut(s)	108, 279, 536, 690, 867, 935, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.