Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000206.1

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

124169 .. 125481

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000206.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggtgggacccaaccgcaacatgcatcctgtagcccgaagttcaagctacgccacggtagtcggaagctgccaatacctcactgggaagcaaccttcccgaccttgccaagttacctttacaaacatgctttttaagactagaatagtggttttagcatcccacatgaaagaaaatgtaaaggataggggttcccttacctataaaagggatccctcctcacacttagaagccatcccattacatactccactcatgtgcgcatccaagaagaatcgtgtcagcggcaaccccatggtgattgagcttccgctcaaacatgacagcctcgtcagcgttagcgctagccatcaactgtcccaagaacttctgacgaccttcagcctctgctcaaccaatgacgagcccagccagcgtcaatatcttctgctggacaatctccaccgctacccatcttccgatgaacaacctccaccgctcctccaatggacaacctccgcttgccatcctccaccaaccccctggccaacgcttcaccaactcgctggcaaagctccgctaaccgccacattgcaccgccaagcagcaaccaccgcgcagcaactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.38

Weight (kDa)

9.35

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc16I	TGCGCA	1 cut(s)	262
AccBSI	CCGCTC	2 cut(s)	313, 478
AccII	CGCG	1 cut(s)	596
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	364
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	521
AleI	CACNNNNGTG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	48, 69, 307, 554
AluI	AGCT	4 cut(s)	48, 69, 307, 554
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	2 cut(s)	387, 604
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	69, 584, 598
AspLEI	GCGC	3 cut(s)	263, 344, 598
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	310, 527
AsuNHI	GCTAGC	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	56, 596
BccI	CCATC	4 cut(s)	242, 357, 460, 513
BciT130I	CCWGG	1 cut(s)	523
BfaI	CTAG	2 cut(s)	141, 345
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	4 cut(s)	70, 286, 585, 599
BlsI	GCNGC	4 cut(s)	71, 287, 586, 600
Bme1390I	CCNGG	1 cut(s)	523
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	4 cut(s)	9, 10, 193, 213
BmrFI	CCNGG	1 cut(s)	523
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	3 cut(s)	34, 167, 272
BmtI	GCTAGC	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	54, 294, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	3 cut(s)	54, 294, 521
BseGI	GGATG	5 cut(s)	25, 158, 234, 263, 505
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	208, 470
BseXI	GCAGC	2 cut(s)	56, 596
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	1 cut(s)	526
BslFI	GGGAC	2 cut(s)	21, 343
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	21, 343
BsnI	GGCC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	294
BspANI	GGCC	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	4 cut(s)	9, 10, 193, 213
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	2 cut(s)	206, 219
BsrBI	CCGCTC	2 cut(s)	313, 478
BsrDI	GCAATG	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	54, 294, 521
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	3 cut(s)	58, 357, 606
BstC8I	GCNNGC	4 cut(s)	346, 413, 502, 547
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	2 cut(s)	54, 294
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	5 cut(s)	25, 158, 234, 263, 505
BstFNI	CGCG	1 cut(s)	596
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	3 cut(s)	263, 344, 598
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	333, 412, 551, 593
BstNI	CCWGG	1 cut(s)	523
BstNSI	RCATGY	2 cut(s)	25, 130
BstSCI	CCNGG	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	56, 596
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	2 cut(s)	522, 545
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	526
BtgI	CCRYGG	2 cut(s)	54, 294
BtsCI	GGATG	5 cut(s)	25, 158, 234, 263, 505
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	4 cut(s)	346, 413, 502, 547
CaiI	CAGNNNCTG	2 cut(s)	387, 604
CfoI	GCGC	3 cut(s)	263, 344, 598
Cfr13I	GGNCC	1 cut(s)	8
CseI	GACGC	1 cut(s)	404
CviAII	CATG	6 cut(s)	22, 127, 166, 256, 295, 320
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	8
Eco47III	AGCGCT	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	6 cut(s)	25, 130, 169, 259, 298, 323
FaiI	YATR	8 cut(s)	23, 128, 167, 204, 246, 257, 296, 321
FaqI	GGGAC	2 cut(s)	21, 343
FatI	CATG	6 cut(s)	21, 126, 165, 255, 294, 319
Fnu4HI	GCNGC	4 cut(s)	70, 286, 585, 599
FokI	GGATG	5 cut(s)	12, 145, 221, 250, 492
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	4 cut(s)	70, 286, 585, 599
FspAI	RTGCGCAY	1 cut(s)	262
FspBI	CTAG	2 cut(s)	141, 345
FspI	TGCGCA	1 cut(s)	262
GlaI	GCGC	3 cut(s)	262, 343, 597
GluI	GCNGC	4 cut(s)	70, 286, 585, 599
GsaI	CCCAGC	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	526
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	3 cut(s)	263, 344, 598
Hin1II	CATG	6 cut(s)	25, 130, 169, 259, 298, 323
Hin6I	GCGC	3 cut(s)	261, 342, 596
HinP1I	GCGC	3 cut(s)	261, 342, 596
HinfI	GANTC	1 cut(s)	274
HphI	GGTGA	2 cut(s)	310, 527
Hpy188I	TCNGA	3 cut(s)	65, 372, 460
Hpy188III	TCNNGA	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	105, 388
HpyCH4III	ACNGT	3 cut(s)	58, 357, 606
HpyCH4V	TGCA	2 cut(s)	25, 574
HpyF10VI	GCNNNNNNNGC	4 cut(s)	333, 412, 551, 593
HpyF3I	CTNAG	1 cut(s)	226
Hsp92II	CATG	6 cut(s)	25, 130, 169, 259, 298, 323
HspAI	GCGC	3 cut(s)	261, 342, 596
KflI	GGGWCCC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	483, 559
LpnPI	CCDG	8 cut(s)	42, 69, 416, 421, 425, 508, 531, 535
Lsp1109I	GCAGC	2 cut(s)	56, 596
LweI	GCATC	3 cut(s)	34, 167, 272
MaeI	CTAG	2 cut(s)	141, 345
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	2 cut(s)	313, 478
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	283, 416, 447
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	526
MluNI	TGGCCA	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	9 cut(s)	89, 226, 229, 338, 395, 480, 491, 505, 519
Mox20I	TGGCCA	1 cut(s)	526
Mph1103I	ATGCAT	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	526
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	256
Msp20I	TGGCCA	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	523
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	4 cut(s)	333, 412, 551, 593
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	211
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	6 cut(s)	25, 130, 169, 259, 298, 323
NlaIV	GGNNCC	4 cut(s)	9, 10, 193, 213
NsbI	TGCGCA	1 cut(s)	262
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	2 cut(s)	25, 130
OliI	CACNNNNGTG	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	71, 287, 586, 600
PpuMI	RGGWCCY	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	4 cut(s)	9, 10, 193, 213
PspPI	GGNCC	1 cut(s)	8
PspPPI	RGGWCCY	1 cut(s)	8
PstNI	CAGNNNCTG	2 cut(s)	387, 604
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	4 cut(s)	70, 286, 585, 599
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	523
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	3 cut(s)	34, 167, 272
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	256
SspMI	CTAG	2 cut(s)	141, 345
StyD4I	CCNGG	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	58, 357, 606
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	3 cut(s)	69, 584, 598
TspDTI	ATGAA	2 cut(s)	182, 477
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	205
XceI	RCATGY	2 cut(s)	25, 130
XcmI	CCANNNNNNNNNTGG	2 cut(s)	80, 519
XspI	CTAG	2 cut(s)	141, 345
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.