Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008012.1

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Forward (+)

3981 .. 5829

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008012.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgggatccaaccgctacttgcatcttgtagccctatgttcaagctacgctacggtatccggaagtcgcaaatccgtcgccgggaagccacctttccggccttgccaacatgccctcacaaataggctctctagactagaaatggtgaaccggcttcaagcatccgaaacttggcttggtagtcttgaagactcaataatcaaggcatgcgcatgcgcatgggactcaaggatcaagggtgagttttttcatcaaacaatgttcagcatcagcttgtctctggtcaagagcttcattcaagatgtgcacaagctagttgagatcgaacccaaatccctctgtggagtagaaatctacaaaggaatcctaatgcgctatgacaccacatcaactgcttaccttggcaaacaagaagatgcaattgactttgacatcacgtattaccgaagcaaggacttcatcactcctaggctccatgaaggcatacttgaagaaatagagcaattggcactgtttaactaccgatcggagtactgccacattggggaaagaatagaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

187

Amino Acids

21.39

Weight (kDa)

6.59

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	211, 217
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	13, 239
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	4 cut(s)	81, 171, 451, 544
AgsI	TTSAA	5 cut(s)	42, 158, 188, 299, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AluBI	AGCT	4 cut(s)	45, 273, 291, 313
AluI	AGCT	4 cut(s)	45, 273, 291, 313
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	282
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	13, 239
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	1 cut(s)	98
ApaLI	GTGCAC	1 cut(s)	305
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	3 cut(s)	212, 218, 375
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	157, 251
AvrII	CCTAGG	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciVI	GTATCC	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	4 cut(s)	132, 137, 314, 468
BfuI	GTATCC	1 cut(s)	67
BlnI	CCTAGG	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	7, 473
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	4 cut(s)	31, 170, 276, 406
BpiI	GAAGAC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	400, 467
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 171, 451, 544
Bse118I	RCCGGY	1 cut(s)	150
BseAI	TCCGGA	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	400, 467
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	4 cut(s)	81, 171, 451, 544
BseSI	GKGCMC	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	4 cut(s)	60, 81, 97, 151
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	4 cut(s)	81, 171, 451, 544
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	5, 231, 321, 524
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	7, 473
BspPI	GGATC	2 cut(s)	13, 239
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	400, 467
BssMI	GATC	4 cut(s)	5, 231, 321, 524
BssT1I	CCWWGG	2 cut(s)	400, 467
Bst4CI	ACNGT	2 cut(s)	55, 513
BstBAI	YACGTR	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	208, 214
BstF5I	GGATG	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	212, 218, 375
BstKTI	GATC	4 cut(s)	8, 234, 324, 527
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	5, 231, 321, 524
BstMCI	CGRYCG	1 cut(s)	527
BstNSI	RCATGY	3 cut(s)	113, 210, 216
BstSCI	CCNGG	1 cut(s)	80
BstSLI	GKGCMC	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuI	GTATCC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	208, 214
CfoI	GCGC	3 cut(s)	212, 218, 375
Cfr10I	RCCGGY	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	5 cut(s)	110, 207, 213, 219, 476
CviQI	GTAC	1 cut(s)	532
DpnI	GATC	4 cut(s)	7, 233, 323, 526
DpnII	GATC	4 cut(s)	5, 231, 321, 524
Eco130I	CCWWGG	2 cut(s)	400, 467
EcoT14I	CCWWGG	2 cut(s)	400, 467
ErhI	CCWWGG	2 cut(s)	400, 467
FaeI	CATG	5 cut(s)	113, 210, 216, 222, 479
FaiI	YATR	9 cut(s)	37, 111, 208, 214, 220, 378, 477, 485, 562
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	5 cut(s)	109, 206, 212, 218, 475
FokI	GGATG	1 cut(s)	148
FspAI	RTGCGCAY	2 cut(s)	211, 217
FspBI	CTAG	4 cut(s)	132, 137, 314, 468
FspI	TGCGCA	2 cut(s)	211, 217
GlaI	GCGC	3 cut(s)	211, 217, 374
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	4 cut(s)	60, 81, 97, 151
HhaI	GCGC	3 cut(s)	212, 218, 375
Hin1II	CATG	5 cut(s)	113, 210, 216, 222, 479
Hin6I	GCGC	3 cut(s)	210, 216, 373
HinP1I	GCGC	3 cut(s)	210, 216, 373
HinfI	GANTC	3 cut(s)	191, 224, 363
HpaII	CCGG	4 cut(s)	60, 81, 97, 151
HphI	GGTGA	2 cut(s)	157, 251
Hpy166II	GTNNAC	2 cut(s)	148, 307
Hpy188I	TCNGA	2 cut(s)	166, 529
Hpy188III	TCNNGA	5 cut(s)	60, 132, 185, 286, 299
Hpy8I	GTNNAC	2 cut(s)	148, 307
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	55, 513
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	22, 307, 419
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	5 cut(s)	113, 210, 216, 222, 479
HspAI	GCGC	3 cut(s)	210, 216, 373
Kpn2I	TCCGGA	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	5, 231, 321, 524
LmnI	GCTCC	1 cut(s)	477
LpnPI	CCDG	5 cut(s)	73, 94, 110, 164, 266
LweI	GCATC	4 cut(s)	31, 170, 276, 406
MaeI	CTAG	4 cut(s)	132, 137, 314, 468
MaeII	ACGT	1 cut(s)	437
MalI	GATC	4 cut(s)	7, 233, 323, 526
MboI	GATC	4 cut(s)	5, 231, 321, 524
MboII	GAAGA	3 cut(s)	200, 425, 503
MfeI	CAATTG	2 cut(s)	420, 503
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	420, 503
MlyI	GAGTC	2 cut(s)	185, 218
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	125, 347
MroI	TCCGGA	1 cut(s)	59
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	2 cut(s)	211, 217
MspI	CCGG	4 cut(s)	60, 81, 97, 151
MspR9I	CCNGG	1 cut(s)	82
MunI	CAATTG	2 cut(s)	420, 503
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	4 cut(s)	5, 231, 321, 524
NlaIII	CATG	5 cut(s)	113, 210, 216, 222, 479
NlaIV	GGNNCC	2 cut(s)	7, 473
NsbI	TGCGCA	2 cut(s)	211, 217
NspI	RCATGY	3 cut(s)	113, 210, 216
PaeI	GCATGC	2 cut(s)	210, 216
PfeI	GAWTC	1 cut(s)	363
Ple19I	CGATCG	1 cut(s)	527
PleI	GAGTC	2 cut(s)	185, 218
PpsI	GAGTC	2 cut(s)	185, 218
Ppu21I	YACGTR	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	7, 473
PsuI	RGATCY	1 cut(s)	5
PvuI	CGATCG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	2 cut(s)	211, 217
SaqAI	TTAA	1 cut(s)	516
Sau3AI	GATC	4 cut(s)	5, 231, 321, 524
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	2 cut(s)	185, 218
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	7 cut(s)	47, 94, 275, 293, 315, 402, 440
SfaNI	GCATC	4 cut(s)	31, 170, 276, 406
SmiMI	CAYNNNNRTG	2 cut(s)	211, 217
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SphI	GCATGC	2 cut(s)	210, 216
Sse9I	AATT	2 cut(s)	420, 503
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	4 cut(s)	132, 137, 314, 468
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	2 cut(s)	400, 467
TaaI	ACNGT	2 cut(s)	55, 513
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	420, 503
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	239, 283, 448, 492
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	516
VneI	GTGCAC	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	131
XceI	RCATGY	3 cut(s)	113, 210, 216
XmaJI	CCTAGG	1 cut(s)	467
XspI	CTAG	4 cut(s)	132, 137, 314, 468
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.