Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

12409202 .. 12431286

Gene Structure 22085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGGGGCCCAACCGAGACATATATCCCTTAGCCCAACATTCAACCTACCCTGTGGTAGTCGAAAGCGGCCAAGACCTCGCGGGGAAACAACCTTCCCGGCCTTGCCAACTTGCCTTCACAACATGCTTTGAAGACTACAAATTGGACTCTTTGTCCCACATTGAAGAAAATGTAAATGAGAGGGGTTCCCTTACCTATAAAAGGGACCCCTCCTCCCACTTAGATATCCATCTCATTACATCTTTTCATGCCGCTTCAATTGTTTTCCCACAACCCTATTTTCAAGGTTTATGCTTCTCCCATGTCGAATCCCCACCATCACTACCTACACACAACAAAAGTTTGAAGTTGGATTATTCCGGTGCGTTTGATGCGGTTGAATCTCCTCCCAGAGGTTGCGGATCTTGTTGGAATCAAGATCTTGCTAGCTTTGATTCCAACACAAGGGCTTCGGATGCGATGGAGTTCAAGATTATGAAGAAGAAAGGCTTGCGGCGGCACATCCGGAGAAGGCCTTCTTCATTCCCAAGAAGAAAAGAGTTCATTTTTATCGGTTATCCGGTGTTTGAGACGGTGAAGATGGCATTGGCAATAGCAGCTATAGCAATAGCTTTACCAAATCCCATGCATTTGTCTCTAACTTTATCAATTGCCGAGGCAGAGGAGCCTTCTGCACAAGAAGAAGAACCCATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.04

Weight (kDa)

6.3

Isoelectric Point (pI)

69.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	507
AciI	CCGC	7 cut(s)	69, 83, 255, 377, 402, 496, 499
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	70
AfiI	CCNNNNNNNGG	3 cut(s)	204, 395, 447
AgsI	TTSAA	8 cut(s)	45, 134, 167, 261, 287, 349, 383, 472
AhdI	GACNNNNNGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	3 cut(s)	432, 602, 614
AluI	AGCT	3 cut(s)	432, 602, 614
Alw26I	GTCTC	3 cut(s)	12, 566, 642
AlwI	GGATC	1 cut(s)	412
Aor13HI	TCCGGA	1 cut(s)	507
AoxI	GGCC	4 cut(s)	8, 70, 101, 515
ApaI	GGGCCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	8, 9, 208
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	589
AsuNHI	GCTAGC	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	4 cut(s)	240, 328, 457, 577
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	12, 566, 642
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	603
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	5 cut(s)	70, 255, 497, 500, 600
BlsI	GCNGC	5 cut(s)	71, 256, 498, 501, 601
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	1 cut(s)	208
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	8, 9, 208
BmiI	GGNNCC	6 cut(s)	9, 10, 190, 209, 210, 669
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	364, 448
BmtI	GCTAGC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	3 cut(s)	362, 507, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 395, 447
Bse8I	GATNNNNATC	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	2 cut(s)	463, 504
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	3 cut(s)	204, 395, 447
BseRI	GAGGAG	3 cut(s)	205, 378, 680
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	4 cut(s)	10, 72, 103, 517
BsiSI	CCGG	4 cut(s)	100, 363, 508, 563
BslFI	GGGAC	2 cut(s)	142, 221
BslI	CCNNNNNNNGG	3 cut(s)	204, 395, 447
BsmAI	GTCTC	3 cut(s)	12, 566, 642
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	2 cut(s)	142, 221
BsnI	GGCC	4 cut(s)	10, 72, 103, 517
Bsp120I	GGGCCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	404, 421
BspACI	CCGC	7 cut(s)	69, 83, 255, 377, 402, 496, 499
BspANI	GGCC	4 cut(s)	10, 72, 103, 517
BspEI	TCCGGA	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	6 cut(s)	9, 10, 190, 209, 210, 669
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	2 cut(s)	404, 421
Bst4CI	ACNGT	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	430, 494
BstDEI	CTNAG	2 cut(s)	31, 223
BstENI	CCTNNNNNAGG	2 cut(s)	202, 393
BstF5I	GGATG	2 cut(s)	463, 504
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	407, 424
BstMAI	GTCTC	3 cut(s)	12, 566, 642
BstMBI	GATC	2 cut(s)	404, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 458, 599, 605
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	611
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	404, 421
BstYI	RGATCY	2 cut(s)	404, 421
BsuRI	GGCC	4 cut(s)	10, 72, 103, 517
BtgZI	GCGATG	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	463, 504
Cac8I	GCNNGC	2 cut(s)	430, 494
Cfr13I	GGNCC	3 cut(s)	8, 9, 208
CviAII	CATG	4 cut(s)	126, 251, 305, 628
DdeI	CTNAG	2 cut(s)	31, 223
DpnI	GATC	2 cut(s)	406, 423
DpnII	GATC	2 cut(s)	404, 421
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	517
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	2 cut(s)	202, 393
EcoO109I	RGGNCCY	2 cut(s)	8, 208
EcoRV	GATATC	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	4 cut(s)	129, 254, 308, 631
FalI	AAGNNNNNCTT	4 cut(s)	476, 508, 505, 537
FaqI	GGGAC	2 cut(s)	142, 221
FatI	CATG	4 cut(s)	125, 250, 304, 627
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	5 cut(s)	70, 255, 497, 500, 600
FokI	GGATG	2 cut(s)	470, 491
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	5 cut(s)	70, 255, 497, 500, 600
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	5 cut(s)	70, 255, 497, 500, 600
HaeIII	GGCC	4 cut(s)	10, 72, 103, 517
HapII	CCGG	4 cut(s)	100, 363, 508, 563
Hin1II	CATG	4 cut(s)	129, 254, 308, 631
HinfI	GANTC	5 cut(s)	149, 311, 383, 415, 437
HpaII	CCGG	4 cut(s)	100, 363, 508, 563
HphI	GGTGA	1 cut(s)	589
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	3 cut(s)	419, 472, 508
HpyAV	CCTTC	5 cut(s)	105, 127, 507, 528, 681
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4V	TGCA	2 cut(s)	631, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 458, 599, 605
HpyF3I	CTNAG	2 cut(s)	31, 223
Hsp92II	CATG	4 cut(s)	129, 254, 308, 631
KflI	GGGWCCC	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	507
Kzo9I	GATC	2 cut(s)	404, 421
LmnI	GCTCC	1 cut(s)	667
LpnPI	CCDG	6 cut(s)	66, 113, 376, 406, 521, 576
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	2 cut(s)	364, 448
MaeI	CTAG	1 cut(s)	429
MalI	GATC	2 cut(s)	406, 423
MboI	GATC	2 cut(s)	404, 421
MboII	GAAGA	9 cut(s)	146, 179, 493, 496, 513, 546, 592, 695, 698
MfeI	CAATTG	2 cut(s)	261, 651
MflI	RGATCY	2 cut(s)	404, 421
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	143, 261, 651
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	3 cut(s)	333, 392, 465
MnlI	CCTC	8 cut(s)	89, 177, 223, 226, 389, 399, 652, 658
Mph1103I	ATGCAT	1 cut(s)	633
MroI	TCCGGA	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	1 cut(s)	700
MspI	CCGG	4 cut(s)	100, 363, 508, 563
MspR9I	CCNGG	1 cut(s)	100
MunI	CAATTG	2 cut(s)	261, 651
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	374, 458, 599, 605
NciI	CCSGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	404, 421
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	4 cut(s)	129, 254, 308, 631
NlaIV	GGNNCC	6 cut(s)	9, 10, 190, 209, 210, 669
NmeAIII	GCCGAG	1 cut(s)	682
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	311, 383, 415, 437
PkrI	GCNGC	5 cut(s)	71, 256, 498, 501, 601
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	6 cut(s)	9, 10, 190, 209, 210, 669
PspOMI	GGGCCC	1 cut(s)	8
PspPI	GGNCC	3 cut(s)	8, 9, 208
PspPPI	RGGWCCY	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	404, 421
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	5 cut(s)	70, 255, 497, 500, 600
Sau3AI	GATC	2 cut(s)	404, 421
Sau96I	GGNCC	3 cut(s)	8, 9, 208
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	364, 448
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	143, 261, 651
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	7 cut(s)	69, 83, 255, 377, 402, 496, 499
SspMI	CTAG	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	577
TaqI	TCGA	2 cut(s)	63, 309
TasI	AATT	3 cut(s)	143, 261, 651
TauI	GCSGC	4 cut(s)	72, 257, 499, 502
TfiI	GAWTC	4 cut(s)	311, 383, 415, 437
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TseI	GCWGC	1 cut(s)	599
TspDTI	ATGAA	4 cut(s)	239, 494, 513, 535
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	2 cut(s)	202, 393
XceI	RCATGY	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.