Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

23268112 .. 23268916

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGTGAGGCCCAACCGAGACATGCATCTTGTAGCCTTATGTTCAAGCTACGCTACGGTATCTGGAAGTCGCAAATCTGTCGCCGGGAACCCACCTTCCCGGCCTTGTCAACATGCCCTCACAAATAGGCTTTCTAGACTAGAAATAGTTGTTGCTTGTCCCACATTGAAAACCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

59

Amino Acids

6.42

Weight (kDa)

10.31

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	45, 169
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	8, 101
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	2 cut(s)	85, 100
AsuHPI	GGTGA	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BcnI	CCSGG	2 cut(s)	85, 100
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	135, 140
Bme1390I	CCNGG	2 cut(s)	85, 100
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	2 cut(s)	85, 100
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	85, 100
BshFI	GGCC	2 cut(s)	10, 103
BsiSI	CCGG	2 cut(s)	84, 100
BslFI	GGGAC	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	10, 103
BspANI	GGCC	2 cut(s)	10, 103
BspLI	GGNNCC	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	12
BstNSI	RCATGY	2 cut(s)	25, 116
BstSCI	CCNGG	2 cut(s)	83, 98
BsuRI	GGCC	2 cut(s)	10, 103
Cfr13I	GGNCC	1 cut(s)	9
CviAII	CATG	3 cut(s)	22, 113, 175
CviJI	RGCY	5 cut(s)	10, 35, 48, 103, 130
CviKI_1	RGCY	5 cut(s)	10, 35, 48, 103, 130
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	3 cut(s)	25, 116, 178
FaiI	YATR	4 cut(s)	23, 40, 114, 176
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	21, 112, 174
FspBI	CTAG	2 cut(s)	135, 140
HaeIII	GGCC	2 cut(s)	10, 103
HapII	CCGG	2 cut(s)	84, 100
Hin1II	CATG	3 cut(s)	25, 116, 178
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	84, 100
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	63, 135
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	25, 116, 178
LpnPI	CCDG	3 cut(s)	48, 97, 113
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	135, 140
MnlI	CCTC	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	27
MspI	CCGG	2 cut(s)	84, 100
MspR9I	CCNGG	2 cut(s)	85, 100
NciI	CCSGG	2 cut(s)	85, 100
NlaIII	CATG	3 cut(s)	25, 116, 178
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	2 cut(s)	25, 116
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	2 cut(s)	85, 100
SetI	ASST	2 cut(s)	50, 97
SfaNI	GCATC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	135, 140
StyD4I	CCNGG	2 cut(s)	83, 98
TaaI	ACNGT	1 cut(s)	58
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	2 cut(s)	25, 116
XspI	CTAG	2 cut(s)	135, 140
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.