Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002207.1

Orthogroup ID

OG0002464

Physical Location & Seq

Genomic Coordinates Reverse (-)

6914 .. 9096

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002207.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggtgggacccaaccgcgacatgcatcccgtagcccgatgtccaagttacgccacggtggtcggaggctgccaatacctcgccgggaagccaccttcccggccttgccaacatgctttctacactagaatagggcgatctgatgagataaaaatggcagtgtacctcttggagcatggtgaggttttgaataagaaagcatgttgtggaggcatgttggcaaggtcgggaaggtggcttcccagcgagctattggctgcctccgaccaccgtggcatagtttggacatcgggttacgaggtgaatgtcgcggttgggtcccaccatggcttatgggccccccaaatagggtgtgatatatgcttggtgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.45

Weight (kDa)

8.52

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46750 AT2G46760 AT5G56470
fragaria_vesca	FvH4_7g17510 FvH4_7g17511
malus_domestica	MD01G1087800.v1.1 MD07G1157900.v1.1
prunus_persica	Prupe.2G196400_v2.0.a1
pyrus_communis	pycom01g11170 pycom07g15450
rosa_chinensis	RchiOBHm_Chr1g0360921 RchiOBHm_Chr1g0360951 RchiOBHm_Chr3g0481291 RchiOBHm_Chr5g0029651
rosa_laevigata	RLG00000019622 RLG00000027767 RLG00000027769
rosa_multiflora	Rmu_sc0000206.1_g000019 Rmu_sc0000677.1_g000024 Rmu_sc0002207.1_g000003 Rmu_sc0008012.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228090 Rroxscaffold_4G00295680 Rroxscaffold_4G00295700 Rroxscaffold_5G00385060
rosa_rugosa	Rorug01G0283500 Rorug01G0283800 Rorug03G0191000
rosa_samantha	Rh1AG295000 Rh1BG259800 Rh1BG259900 Rh1CG277200 Rh1DG289900 Rh2BG393900 Rh3AG241900 Rh3BG277100 Rh3DG268900
rosa_wichuraiana	Rw1G026070 Rw1G026100 Rw1G026110 Rw3G021610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	18, 311
AciI	CCGC	2 cut(s)	16, 311
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	347, 348
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AoxI	GGCC	2 cut(s)	101, 336
ApaI	GGGCCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	69, 257
AspS9I	GGNCC	4 cut(s)	8, 318, 336, 337
AsuC2I	CCSGG	2 cut(s)	85, 100
AsuHPI	GGTGA	2 cut(s)	191, 313
AvaII	GGWCC	2 cut(s)	8, 318
BaeGI	GKGCMC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	56, 244
BcnI	CCSGG	2 cut(s)	85, 100
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	70, 258
BlsI	GCNGC	2 cut(s)	71, 259
Bme1390I	CCNGG	2 cut(s)	85, 100
Bme18I	GGWCC	2 cut(s)	8, 318
BmgT120I	GGNCC	4 cut(s)	8, 318, 336, 337
BmiI	GGNNCC	6 cut(s)	9, 10, 319, 320, 338, 339
BmrFI	CCNGG	2 cut(s)	85, 100
BmsI	GCATC	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	85, 100
BsaJI	CCNNGG	3 cut(s)	54, 271, 325
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 348
BseDI	CCNNGG	3 cut(s)	54, 271, 325
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	347, 348
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	56, 244
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	18, 311
BshFI	GGCC	2 cut(s)	103, 338
BsiSI	CCGG	2 cut(s)	84, 100
BslFI	GGGAC	2 cut(s)	21, 304
BslI	CCNNNNNNNGG	2 cut(s)	347, 348
BsmFI	GGGAC	2 cut(s)	21, 304
BsnI	GGCC	2 cut(s)	103, 338
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	2 cut(s)	16, 311
BspANI	GGCC	2 cut(s)	103, 338
BspFNI	CGCG	2 cut(s)	18, 311
BspLI	GGNNCC	6 cut(s)	9, 10, 319, 320, 338, 339
BssECI	CCNNGG	3 cut(s)	54, 271, 325
BssMI	GATC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	2 cut(s)	58, 272
BstC8I	GCNNGC	1 cut(s)	248
BstDSI	CCRYGG	3 cut(s)	54, 271, 325
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	2 cut(s)	18, 311
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstNSI	RCATGY	4 cut(s)	25, 116, 204, 217
BstSCI	CCNGG	2 cut(s)	83, 98
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	2 cut(s)	18, 311
BstV1I	GCAGC	2 cut(s)	56, 244
BsuRI	GGCC	2 cut(s)	103, 338
BtgI	CCRYGG	3 cut(s)	54, 271, 325
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	4 cut(s)	8, 318, 336, 337
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	6 cut(s)	22, 113, 176, 201, 214, 326
CviJI	RGCY	9 cut(s)	35, 69, 91, 103, 238, 250, 257, 330, 338
CviKI_1	RGCY	9 cut(s)	35, 69, 91, 103, 238, 250, 257, 330, 338
CviQI	GTAC	1 cut(s)	163
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	8, 318
EcoO109I	RGGNCCY	3 cut(s)	8, 318, 337
EcoT14I	CCWWGG	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	6 cut(s)	25, 116, 179, 204, 217, 329
FaqI	GGGAC	2 cut(s)	21, 304
FatI	CATG	6 cut(s)	21, 112, 175, 200, 213, 325
Fnu4HI	GCNGC	2 cut(s)	70, 258
FokI	GGATG	1 cut(s)	12
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	70, 258
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	2 cut(s)	70, 258
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	103, 338
HapII	CCGG	2 cut(s)	84, 100
Hin1II	CATG	6 cut(s)	25, 116, 179, 204, 217, 329
HpaII	CCGG	2 cut(s)	84, 100
HphI	GGTGA	2 cut(s)	191, 313
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	65, 142, 265
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	105, 225
HpyCH4III	ACNGT	2 cut(s)	58, 272
HpyCH4V	TGCA	1 cut(s)	25
Hsp92II	CATG	6 cut(s)	25, 116, 179, 204, 217, 329
KflI	GGGWCCC	2 cut(s)	8, 318
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	97, 113, 256
Lsp1109I	GCAGC	2 cut(s)	56, 244
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	47, 293, 367
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	43, 288
MnlI	CCTC	7 cut(s)	59, 89, 175, 176, 203, 271, 292
Mph1103I	ATGCAT	1 cut(s)	27
MspI	CCGG	2 cut(s)	84, 100
MspR9I	CCNGG	2 cut(s)	85, 100
MvnI	CGCG	2 cut(s)	18, 311
NciI	CCSGG	2 cut(s)	85, 100
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	1 cut(s)	137
NlaIII	CATG	6 cut(s)	25, 116, 179, 204, 217, 329
NlaIV	GGNNCC	6 cut(s)	9, 10, 319, 320, 338, 339
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	4 cut(s)	25, 116, 204, 217
PkrI	GCNGC	2 cut(s)	71, 259
PpuMI	RGGWCCY	2 cut(s)	8, 318
Psp5II	RGGWCCY	2 cut(s)	8, 318
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	6 cut(s)	9, 10, 319, 320, 338, 339
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	4 cut(s)	8, 318, 336, 337
PspPPI	RGGWCCY	2 cut(s)	8, 318
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SatI	GCNGC	2 cut(s)	70, 258
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	4 cut(s)	8, 318, 336, 337
ScrFI	CCNGG	2 cut(s)	85, 100
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	8 cut(s)	81, 97, 168, 186, 227, 236, 252, 303
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	2 cut(s)	8, 318
SsiI	CCGC	2 cut(s)	16, 311
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	83, 98
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	2 cut(s)	58, 272
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	69, 257
Tsp45I	GTSAC	1 cut(s)	367
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	8, 318
XceI	RCATGY	4 cut(s)	25, 116, 204, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.