Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

23208463 .. 23211139

Gene Structure 2677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCACTACGATCAGTAAGCAGGAGGCTCGGGAGCAGAATTTTGAATCAACGTTCCTTTGTTGCTTCGCTTCACTCTCATGCCACAAGTTTCGGGTTTCAAGAAGTAAAGGAAGAAGAGAAAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAGTTATGATATTATGAATGATGTGATGAGTGGTGGTTTGCATAGGCTATGGAAGGAAAGACTCGTTGGGAAGCTAAGTCCATTTGCAGGGATGAAGCATCTTGATGTGGCCGGAGGAACAGGTGATGTTGCTTTTAGGATCTATGATGCTGTTTACAGTGTCAAACGAAGAGCATTGCAGAAAGTTGATGAGGCTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGGTCTAAGAGATAACAAGTCACTCGTATGGGTCGAAGGAGATGCAGAGGCCTTGAGTTTCGATGACAATTCAATGGATGGATACACCATTGCATTTGGAATAAGGAATGTCACACACATCGAAAAGGCTCTAGCTGAGGCTTATAGGGTACTCAAACGGGGAGGAAGATTTTTGTGCCTTGAGCTCAGCCATGTAGAAATTCCGGTTTTCAAAAATCTATACGATTTGTATTCTTTCCAGGTCATTCCAAACTTAGGGGAACTAATCGCCGGGGACAGGGAATCTTATCAGTACTTGGTTGAGAGCGTTCGTCGGTTTCCCCCTCAGGAGCGATTTGCATCAATGATCGCAGATGCAGGATTTGAGAAGGTGGAGTACGAGAACCTTGTTGGTGGAGTTGTCGCCATTCACTCTGCCATAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

288

Amino Acids

32.29

Weight (kDa)

6.67

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	40 - 287	9.2e-84	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	83 - 211	8.5e-10	Methyltransferase domain
Methyltransf_12	PF08242	88 - 203	1.1e-08	Methyltransferase domain
Methyltransf_25	PF13649	122 - 201	5.4e-13	Methyltransferase domain
Methyltransf_11	PF08241	124 - 205	9.3e-16	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	52, 411
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	39, 636
AfaI	GTAC	3 cut(s)	588, 731, 815
AfiI	CCNNNNNNNGG	3 cut(s)	248, 692, 714
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	46, 101, 510, 649
AjnI	CCWGG	1 cut(s)	675
AjuI	GAANNNNNNNTTGG	4 cut(s)	113, 145, 210, 242
AluBI	AGCT	6 cut(s)	158, 235, 428, 572, 622, 862
AluI	AGCT	6 cut(s)	158, 235, 428, 572, 622, 862
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	270, 486
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	39, 636
AseI	ATTAAT	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	139, 296
AvaI	CYCGRG	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	624
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
Bbv12I	GWGCWC	1 cut(s)	624
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	509
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 461, 495
BciT130I	CCWGG	1 cut(s)	677
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	1 cut(s)	709
BfaI	CTAG	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	512
BisI	GCNGC	1 cut(s)	429
BlpI	GCTNAGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	430
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	2 cut(s)	677, 709
BmeT110I	CYCGRG	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	677, 709
BmsI	GCATC	5 cut(s)	268, 298, 469, 781, 785
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	3 cut(s)	383, 511, 638
BpuMI	CCSGG	1 cut(s)	709
BsaAI	YACGTR	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 692, 714
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	2 cut(s)	335, 525
Bse8I	GATNNNNATC	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	258, 520
BseJI	GATNNNNATC	1 cut(s)	775
BseLI	CCNNNNNNNGG	3 cut(s)	248, 692, 714
BseMI	GCAATG	2 cut(s)	335, 525
BseMII	CTCAG	5 cut(s)	386, 423, 564, 637, 776
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	2 cut(s)	272, 488
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	273, 641, 708
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	3 cut(s)	248, 692, 714
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	2 cut(s)	272, 488
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	11, 300, 783
Bsp1720I	GCTNAGC	1 cut(s)	623
BspANI	GGCC	2 cut(s)	272, 488
BspCNI	CTCAG	5 cut(s)	385, 424, 565, 636, 775
BspPI	GGATC	1 cut(s)	308
BspQI	GCTCTTC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	335, 525
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	3 cut(s)	11, 300, 783
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	111, 325
BstBAI	YACGTR	1 cut(s)	382
BstDEI	CTNAG	8 cut(s)	236, 372, 432, 443, 573, 623, 691, 762
BstF5I	GGATG	2 cut(s)	258, 520
BstKTI	GATC	3 cut(s)	14, 303, 786
BstMBI	GATC	3 cut(s)	11, 300, 783
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	675, 707
BstSNI	TACGTA	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
Bsu36I	CCTNAGG	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	272, 488
BtsCI	GGATG	2 cut(s)	258, 520
BtsIMutI	CAGTG	1 cut(s)	325
Csp6I	GTAC	3 cut(s)	587, 730, 814
CviAII	CATG	3 cut(s)	80, 403, 629
CviQI	GTAC	3 cut(s)	587, 730, 814
DdeI	CTNAG	8 cut(s)	236, 372, 432, 443, 573, 623, 691, 762
DpnI	GATC	3 cut(s)	13, 302, 785
DpnII	GATC	3 cut(s)	11, 300, 783
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	111, 325
EarI	CTCTTC	2 cut(s)	111, 325
Ecl136II	GAGCTC	1 cut(s)	622
Eco105I	TACGTA	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	624
Eco53kI	GAGCTC	1 cut(s)	622
Eco81I	CCTNAGG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	622
EcoRII	CCWGG	1 cut(s)	675
EcoT38I	GRGCYC	1 cut(s)	624
FaeI	CATG	3 cut(s)	83, 406, 632
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	3 cut(s)	79, 402, 628
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	265, 527
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	272, 488
HapII	CCGG	3 cut(s)	273, 641, 708
Hin1II	CATG	3 cut(s)	83, 406, 632
HinfI	GANTC	3 cut(s)	46, 222, 719
HpaII	CCGG	3 cut(s)	273, 641, 708
HphI	GGTGA	2 cut(s)	139, 296
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	375, 866
Hpy188III	TCNNGA	5 cut(s)	31, 101, 263, 362, 764
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	3 cut(s)	208, 467, 799
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	3 cut(s)	52, 381, 411
HpyCH4V	TGCA	7 cut(s)	202, 248, 340, 482, 530, 776, 794
HpyF3I	CTNAG	8 cut(s)	236, 372, 432, 443, 573, 623, 691, 762
HpySE526I	ACGT	3 cut(s)	52, 381, 411
Hsp92II	CATG	3 cut(s)	83, 406, 632
Kzo9I	GATC	3 cut(s)	11, 300, 783
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	33, 766
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	5 cut(s)	268, 298, 469, 781, 785
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	3 cut(s)	52, 381, 411
MaeIII	GTNAC	3 cut(s)	386, 456, 547
MalI	GATC	3 cut(s)	13, 302, 785
MboI	GATC	3 cut(s)	11, 300, 783
MboII	GAAGA	4 cut(s)	125, 128, 342, 615
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	4 cut(s)	39, 128, 505, 636
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	18, 269, 346, 358, 431, 478, 568, 593, 771
MseI	TTAA	2 cut(s)	393, 407
MslI	CAYNNNNRTG	3 cut(s)	78, 264, 463
MspI	CCGG	3 cut(s)	273, 641, 708
MspR9I	CCNGG	2 cut(s)	677, 709
MvaI	CCWGG	1 cut(s)	677
NciI	CCSGG	1 cut(s)	709
NdeII	GATC	3 cut(s)	11, 300, 783
NlaIII	CATG	3 cut(s)	83, 406, 632
NmuCI	GTSAC	3 cut(s)	386, 456, 547
NspI	RCATGY	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	488
PciI	ACATGT	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	46, 719
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	382
PscI	ACATGT	1 cut(s)	402
PshBI	ATTAAT	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	624
Psp1406I	AACGTT	2 cut(s)	52, 411
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	3 cut(s)	588, 731, 815
RsaNI	GTAC	3 cut(s)	587, 730, 814
RseI	CAYNNNNRTG	3 cut(s)	78, 264, 463
SacI	GAGCTC	1 cut(s)	624
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	393, 407
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	11, 300, 783
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	677, 709
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	5 cut(s)	268, 298, 469, 781, 785
SmiMI	CAYNNNNRTG	3 cut(s)	78, 264, 463
SmlI	CTYRAG	3 cut(s)	362, 490, 617
SmoI	CTYRAG	3 cut(s)	362, 490, 617
SnaBI	TACGTA	1 cut(s)	382
Sse9I	AATT	4 cut(s)	39, 128, 505, 636
SseBI	AGGCCT	1 cut(s)	488
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	624
StuI	AGGCCT	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	675, 707
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	3 cut(s)	55, 384, 414
TaqI	TCGA	4 cut(s)	161, 471, 498, 558
TasI	AATT	4 cut(s)	39, 128, 505, 636
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	2 cut(s)	46, 719
Tru1I	TTAA	2 cut(s)	393, 407
Tru9I	TTAA	2 cut(s)	393, 407
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	3 cut(s)	386, 456, 547
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	3 cut(s)	386, 456, 547
TspDTI	ATGAA	2 cut(s)	191, 269
TspRI	CASTG	1 cut(s)	325
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	2 cut(s)	39, 636
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	569
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.