Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

16685439 .. 16691977

Gene Structure 6539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG097900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTGTCTGAATCACAAGATGACTTACCACCAGGGTGTGCAGATACACACCTTGAATTGCAACCAGCATCACATCCACCTAAATCTTCAGTACAAATGAAGAATCACAGCAGTAGTAGTAGTCTCTCCTTCGACTTGGCTCTTTCGCAGATTGAGTATACAGTTATGGCCTTGAGAACAGTGACGAGGAAGATAGGGAGTAAACTGTTACCCAGGTTTTGTCCTGCATCTCTATTGCATTCTCATGCCACAAGCTTTGGATTCAAGGAAGTACGGGAAGAGGAAAAAAGTCAAATGGTTGGTAATGTCTTCAGCAATGTTGCTTCAAACTATGATACAATGAATGATTTGATGAGTGTAGGATTACACAGATTATGGAAGGATAGATTGGTTTCCAAACTGAATCCTTTTCCTGGAATGAACCATCTTGATGTGGCTGGTGGAACAGGTGATGTTGCTTTCAGAATACTAGACAGTATAAACAGCATCAAACGTAGAGCTTTGCTGAATGTTCTTGAAGATGACTTTCAGGAAGAAACTAAGGTGTATGTATGTGACATCAATCCCAACATGTTGAATGTTGGTAAAAAGCGGGCCTTGCAGAGAGGTCTTGGAGAAGACAAATCCCTTCTATGGGTGGAGGGAGATGCAGAAGCCCTGAGTTTCGGAGATAATACAATGGATGGTTACACAATTGCATTTGGGATCCGGAATGTCACACACATAGAGAAAGCACTTTCTGAAGCTTATAGGGTACTAAAACGGGGAGGAAGGTTCCTGTGCCTTGAACTCAGCCATGTAGAGGTACCTGTATTCAAAGACTTCTATGACTTTTATTCATTCTCAATCATTCCCACCCTAGGAGAGCTAGTTGCAGGAGATAGAGAATCTTATCAGTACTTGGTAGAGAGTATTCGTCGCTTTCCACCACAGGAGACATTTGCTTCAATGATTGCAGATGCAGGTTTCCAGAAGGTTGAGTATGAAAATCTAGTTGGAGGAGTGGTAGCGATTCATTCAGGGTTGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

344

Amino Acids

38.35

Weight (kDa)

5.72

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	95 - 343	2.6e-85	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	138 - 265	7e-07	Methyltransferase domain
Methyltransf_12	PF08242	143 - 259	3.7e-07	Methyltransferase domain
Methyltransf_25	PF13649	173 - 257	1.3e-11	Methyltransferase domain
Methyltransf_11	PF08241	180 - 261	8.4e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	953
Acc65I	GGTACC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	805
AccI	GTMKAC	1 cut(s)	158
AccIII	TCCGGA	1 cut(s)	708
AciI	CCGC	1 cut(s)	592
AclWI	GGATC	2 cut(s)	700, 713
AcsI	RAATTY	1 cut(s)	1029
AcuI	CTGAAG	3 cut(s)	72, 295, 762
AfaI	GTAC	5 cut(s)	93, 273, 756, 807, 899
AfiI	CCNNNNNNNGG	5 cut(s)	413, 633, 634, 802, 860
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	9 cut(s)	56, 265, 327, 518, 577, 788, 817, 948, 1027
AjnI	CCWGG	3 cut(s)	31, 212, 412
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 978, 1010
AleI	CACNNNNGTG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	255, 500, 746, 868
AluI	AGCT	4 cut(s)	255, 500, 746, 868
Alw26I	GTCTC	2 cut(s)	128, 929
AlwI	GGATC	2 cut(s)	700, 713
Aor13HI	TCCGGA	1 cut(s)	708
AoxI	GGCC	2 cut(s)	168, 594
ApoI	RAATTY	1 cut(s)	1029
Asp718I	GGTACC	1 cut(s)	805
AspA2I	CCTAGG	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	1 cut(s)	461
AvrII	CCTAGG	1 cut(s)	859
BamHI	GGATCC	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	805
BbsI	GAAGAC	2 cut(s)	301, 624
BccI	CCATC	2 cut(s)	432, 677
BciT130I	CCWGG	3 cut(s)	33, 214, 414
BcoDI	GTCTC	2 cut(s)	128, 929
BfaI	CTAG	4 cut(s)	470, 860, 869, 992
BfuAI	ACCTGC	1 cut(s)	953
BlnI	CCTAGG	1 cut(s)	859
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	3 cut(s)	33, 214, 414
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	3 cut(s)	707, 776, 807
BmrFI	CCNGG	3 cut(s)	33, 214, 414
BmsI	GCATC	5 cut(s)	77, 236, 495, 637, 949
BpiI	GAAGAC	2 cut(s)	301, 624
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	32, 212, 859
BsaWI	WCCGGW	1 cut(s)	708
BsaXI	ACNNNNNCTCC	4 cut(s)	855, 885, 990, 1020
Bsc4I	CCNNNNNNNGG	5 cut(s)	413, 633, 634, 802, 860
Bse3DI	GCAATG	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	33, 214, 414
BseDI	CCNNGG	3 cut(s)	32, 212, 859
BseGI	GGATG	2 cut(s)	73, 688
BseLI	CCNNNNNNNGG	5 cut(s)	413, 633, 634, 802, 860
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	650, 805
BseRI	GAGGAG	1 cut(s)	1014
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	170, 596
BshNI	GGYRCC	1 cut(s)	805
BsiSI	CCGG	1 cut(s)	709
BslI	CCNNNNNNNGG	5 cut(s)	413, 633, 634, 802, 860
BsmAI	GTCTC	2 cut(s)	128, 929
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	170, 596
Bsp13I	TCCGGA	1 cut(s)	708
Bsp143I	GATC	1 cut(s)	705
BspACI	CCGC	1 cut(s)	592
BspANI	GGCC	2 cut(s)	170, 596
BspCNI	CTCAG	2 cut(s)	651, 804
BspEI	TCCGGA	1 cut(s)	708
BspLI	GGNNCC	3 cut(s)	707, 776, 807
BspMI	ACCTGC	1 cut(s)	953
BspPI	GGATC	2 cut(s)	700, 713
BspT107I	GGYRCC	1 cut(s)	805
BsrDI	GCAATG	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	32, 212, 859
BssMI	GATC	1 cut(s)	705
BssNAI	GTATAC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	859
Bst1107I	GTATAC	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	33, 214, 414
Bst4CI	ACNGT	4 cut(s)	163, 181, 207, 476
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	3 cut(s)	540, 659, 791
BstF5I	GGATG	2 cut(s)	73, 688
BstKTI	GATC	1 cut(s)	708
BstMAI	GTCTC	2 cut(s)	128, 929
BstMBI	GATC	1 cut(s)	705
BstMWI	GCNNNNNNNGC	1 cut(s)	598
BstNI	CCWGG	3 cut(s)	33, 214, 414
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	3 cut(s)	31, 212, 412
BstV2I	GAAGAC	2 cut(s)	301, 624
BstX2I	RGATCY	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	705
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	170, 596
BtsCI	GGATG	2 cut(s)	73, 688
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	5 cut(s)	92, 272, 755, 806, 898
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	3 cut(s)	245, 571, 797
CviQI	GTAC	5 cut(s)	92, 272, 755, 806, 898
DdeI	CTNAG	3 cut(s)	540, 659, 791
DpnI	GATC	1 cut(s)	707
DpnII	GATC	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	859
Eco57I	CTGAAG	3 cut(s)	72, 295, 762
EcoRII	CCWGG	3 cut(s)	31, 212, 412
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	3 cut(s)	248, 574, 800
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	3 cut(s)	244, 570, 796
FauI	CCCGC	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	158
FokI	GGATG	2 cut(s)	60, 695
FspBI	CTAG	4 cut(s)	470, 860, 869, 992
HaeIII	GGCC	2 cut(s)	170, 596
HapII	CCGG	1 cut(s)	709
Hin1II	CATG	3 cut(s)	248, 574, 800
HindIII	AAGCTT	2 cut(s)	253, 744
HinfI	GANTC	6 cut(s)	11, 103, 261, 403, 887, 1012
HpaII	CCGG	1 cut(s)	709
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	159, 203
Hpy188I	TCNGA	4 cut(s)	10, 464, 668, 742
Hpy188III	TCNNGA	5 cut(s)	428, 515, 530, 709, 970
Hpy8I	GTNNAC	2 cut(s)	159, 203
Hpy99I	CGWCG	1 cut(s)	921
HpyAV	CCTTC	5 cut(s)	139, 373, 638, 765, 967
HpyCH4III	ACNGT	4 cut(s)	163, 181, 207, 476
HpyCH4IV	ACGT	1 cut(s)	493
HpyF10VI	GCNNNNNNNGC	1 cut(s)	598
HpyF3I	CTNAG	3 cut(s)	540, 659, 791
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	3 cut(s)	248, 574, 800
Kpn2I	TCCGGA	1 cut(s)	708
KpnI	GGTACC	1 cut(s)	809
Kzo9I	GATC	1 cut(s)	705
LweI	GCATC	5 cut(s)	77, 236, 495, 637, 949
MaeI	CTAG	4 cut(s)	470, 860, 869, 992
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	5 cut(s)	181, 207, 554, 686, 715
MalI	GATC	1 cut(s)	707
MboI	GATC	1 cut(s)	705
MboII	GAAGA	8 cut(s)	78, 112, 202, 290, 301, 530, 545, 629
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	705
MluCI	AATT	3 cut(s)	56, 693, 1029
MmeI	TCCRAC	1 cut(s)	976
MnlI	CCTC	7 cut(s)	180, 274, 599, 634, 761, 796, 992
MroI	TCCGGA	1 cut(s)	708
MslI	CAYNNNNRTG	3 cut(s)	34, 243, 429
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	3 cut(s)	33, 214, 414
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	3 cut(s)	33, 214, 414
MwoI	GCNNNNNNNGC	1 cut(s)	598
NdeII	GATC	1 cut(s)	705
NlaIII	CATG	3 cut(s)	248, 574, 800
NlaIV	GGNNCC	3 cut(s)	707, 776, 807
NmuCI	GTSAC	3 cut(s)	181, 554, 715
NspI	RCATGY	1 cut(s)	574
OliI	CACNNNNGTG	1 cut(s)	34
PciI	ACATGT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	6 cut(s)	11, 103, 261, 403, 887, 1012
PfoI	TCCNGGA	1 cut(s)	412
PscI	ACATGT	1 cut(s)	570
Psp6I	CCWGG	3 cut(s)	31, 212, 412
PspGI	CCWGG	3 cut(s)	31, 212, 412
PspN4I	GGNNCC	3 cut(s)	707, 776, 807
PspPI	GGNCC	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	705
RsaI	GTAC	5 cut(s)	93, 273, 756, 807, 899
RsaNI	GTAC	5 cut(s)	92, 272, 755, 806, 898
RseI	CAYNNNNRTG	3 cut(s)	34, 243, 429
Sau3AI	GATC	1 cut(s)	705
Sau96I	GGNCC	1 cut(s)	594
ScaI	AGTACT	1 cut(s)	899
ScrFI	CCNGG	3 cut(s)	33, 214, 414
SfaNI	GCATC	5 cut(s)	77, 236, 495, 637, 949
SmiMI	CAYNNNNRTG	3 cut(s)	34, 243, 429
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	3 cut(s)	56, 693, 1029
SsiI	CCGC	1 cut(s)	592
SspMI	CTAG	4 cut(s)	470, 860, 869, 992
StyD4I	CCNGG	3 cut(s)	31, 212, 412
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	4 cut(s)	163, 181, 207, 476
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	132
TasI	AATT	3 cut(s)	56, 693, 1029
TatI	WGTACW	2 cut(s)	91, 897
TfiI	GAWTC	6 cut(s)	11, 103, 261, 403, 887, 1012
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	3 cut(s)	181, 554, 715
Tsp45I	GTSAC	3 cut(s)	181, 554, 715
TspDTI	ATGAA	6 cut(s)	113, 356, 434, 828, 999, 1004
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	1029
XceI	RCATGY	1 cut(s)	574
XmaJI	CCTAGG	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	4 cut(s)	470, 860, 869, 992
ZrmI	AGTACT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.