Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Reverse (-)

7067603 .. 7075172

Gene Structure 7570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07660.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCCTTGAGAAGTGTAACCAGGAAGTTAGGGAGTAAACTGTTACCCAGGTTATCTCCTGCATCGTCTCTATTGCATTCTCATGCCACAAGCTTTGGATTCAAGGAAGTAAGGGAAGAGGAAAAAAGTCAGATGGTTGGGAACGTCTTCAGCAATGTTGCTTCAAACTATGATACAATGAATGATTTGATGAGTGCAGGATTACACCGATTATGGAAAGATAGATTGGTTTCCAAACTGAATCCTTTTCCTGGAATGAGCCATCTTGATGTGGCTGGTGGGACAGGTGATGTTGCTTTCAGGATACTAGACAGTATAAACAACATCAAACGTAGAGCTTTGCTGAGTGTTCTTGAAGATGATTTAGAAGAAGAAACTAAGGTGTACGTATGTGACATCAATCCCAACATGTTGAATGTTGGCAAAAAGCGGGCCTTGCAGAGAGGTCTTGGAGAAGACAAATCCCTTCTGTGGGTGGAGGGAGATGCAGAAGCCTTGAGTTTCAGAGATAATACAATGGATGGTTACACAATTGCATTTGGGATCCGGAATGTCACACACATAGAGAAAGCTCTTTCTGAAGCTTATAGGGTACTAAAACGGGGTGGAAGGTTCCTGTGCCTTGAACTCAGCCATGTGGATGTACCTGTATTCAAAGACTTCTATGACTTCTATTCATTCTCTGTTATTCCCACCCTAGGAGAGCTAGTTGCAGGAGATAGAGATTCTTATCAGTACCTGGTAGAGAGTATTCGTCGTTTTCCTCCGCAGGAGACATTTGCTTCATTGATTGCAGATGCAGGTTTCCAGAAGGTTGAATATGAAAATCTTGTTGGAGGAGTCGTAGCGATTCATTCAGGGTTGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

291

Amino Acids

32.4

Weight (kDa)

6.19

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	41 - 289	9.1e-85	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	84 - 211	3.6e-07	Methyltransferase domain
Methyltransf_12	PF08242	89 - 205	2.7e-07	Methyltransferase domain
Methyltransf_25	PF13649	124 - 203	5.5e-12	Methyltransferase domain
Methyltransf_11	PF08241	126 - 207	2.1e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
AccIII	TCCGGA	1 cut(s)	546
AciI	CCGC	2 cut(s)	430, 767
AclWI	GGATC	2 cut(s)	538, 551
AcsI	RAATTY	1 cut(s)	867
AcuI	CTGAAG	2 cut(s)	133, 600
AfaI	GTAC	4 cut(s)	386, 594, 645, 737
AfiI	CCNNNNNNNGG	4 cut(s)	251, 471, 472, 698
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	8 cut(s)	103, 165, 356, 415, 626, 655, 818, 865
AjnI	CCWGG	4 cut(s)	20, 47, 250, 738
AjuI	GAANNNNNNNTTGG	4 cut(s)	209, 241, 816, 848
AluBI	AGCT	5 cut(s)	93, 338, 572, 584, 706
AluI	AGCT	5 cut(s)	93, 338, 572, 584, 706
Alw26I	GTCTC	2 cut(s)	72, 767
AlwI	GGATC	2 cut(s)	538, 551
AlwNI	CAGNNNCTG	1 cut(s)	739
Aor13HI	TCCGGA	1 cut(s)	546
AoxI	GGCC	2 cut(s)	3, 432
ApoI	RAATTY	1 cut(s)	867
Asp700I	GAANNNNTTC	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	697
BamHI	GGATCC	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	139, 462
BccI	CCATC	3 cut(s)	127, 270, 515
BciT130I	CCWGG	4 cut(s)	22, 49, 252, 740
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	72, 767
BfaI	CTAG	3 cut(s)	308, 698, 707
BfuAI	ACCTGC	1 cut(s)	791
BfuI	GTATCC	1 cut(s)	297
BlnI	CCTAGG	1 cut(s)	697
Bme1390I	CCNGG	4 cut(s)	22, 49, 252, 740
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	2 cut(s)	545, 614
BmrFI	CCNGG	4 cut(s)	22, 49, 252, 740
BmsI	GCATC	3 cut(s)	71, 475, 787
BpiI	GAAGAC	2 cut(s)	139, 462
BpuEI	CTTGAG	2 cut(s)	28, 517
BsaAI	YACGTR	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	47, 697
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 828, 858
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 471, 472, 698
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	729
BseAI	TCCGGA	1 cut(s)	546
BseBI	CCWGG	4 cut(s)	22, 49, 252, 740
BseDI	CCNNGG	2 cut(s)	47, 697
BseGI	GGATG	2 cut(s)	526, 646
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	4 cut(s)	251, 471, 472, 698
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	335, 643
BseRI	GAGGAG	1 cut(s)	852
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	5, 434
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	4 cut(s)	251, 471, 472, 698
BsmAI	GTCTC	2 cut(s)	72, 767
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	5, 434
Bsp13I	TCCGGA	1 cut(s)	546
Bsp143I	GATC	1 cut(s)	543
BspACI	CCGC	2 cut(s)	430, 767
BspANI	GGCC	2 cut(s)	5, 434
BspCNI	CTCAG	2 cut(s)	336, 642
BspEI	TCCGGA	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	545, 614
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	2 cut(s)	538, 551
BsrDI	GCAATG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	47, 697
BssMI	GATC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	697
Bst2UI	CCWGG	4 cut(s)	22, 49, 252, 740
Bst4CI	ACNGT	2 cut(s)	42, 314
Bst6I	CTCTTC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	344, 378, 629
BstF5I	GGATG	2 cut(s)	526, 646
BstKTI	GATC	1 cut(s)	546
BstMAI	GTCTC	2 cut(s)	72, 767
BstMBI	GATC	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	4 cut(s)	22, 49, 252, 740
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	4 cut(s)	20, 47, 250, 738
BstSNI	TACGTA	1 cut(s)	388
BstV2I	GAAGAC	2 cut(s)	139, 462
BstX2I	RGATCY	1 cut(s)	543
BstYI	RGATCY	1 cut(s)	543
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	5, 434
BtsCI	GGATG	2 cut(s)	526, 646
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	432
CsiI	ACCWGGT	1 cut(s)	738
Csp6I	GTAC	4 cut(s)	385, 593, 644, 736
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	3 cut(s)	83, 409, 635
CviQI	GTAC	4 cut(s)	385, 593, 644, 736
DdeI	CTNAG	3 cut(s)	344, 378, 629
DpnI	GATC	1 cut(s)	545
DpnII	GATC	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco105I	TACGTA	1 cut(s)	388
Eco130I	CCWWGG	1 cut(s)	697
Eco57I	CTGAAG	2 cut(s)	133, 600
EcoRII	CCWGG	4 cut(s)	20, 47, 250, 738
EcoT14I	CCWWGG	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	697
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	3 cut(s)	86, 412, 638
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	3 cut(s)	82, 408, 634
FauI	CCCGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	533, 653
FspBI	CTAG	3 cut(s)	308, 698, 707
HaeIII	GGCC	2 cut(s)	5, 434
HapII	CCGG	1 cut(s)	547
Hin1II	CATG	3 cut(s)	86, 412, 638
HindIII	AAGCTT	2 cut(s)	91, 582
HinfI	GANTC	5 cut(s)	99, 241, 725, 840, 850
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	38, 385
Hpy188I	TCNGA	3 cut(s)	132, 506, 580
Hpy188III	TCNNGA	5 cut(s)	266, 301, 353, 547, 808
Hpy8I	GTNNAC	2 cut(s)	38, 385
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	3 cut(s)	476, 603, 805
HpyCH4III	ACNGT	2 cut(s)	42, 314
HpyCH4IV	ACGT	3 cut(s)	144, 331, 387
HpyCH4V	TGCA	9 cut(s)	62, 76, 197, 439, 488, 536, 713, 794, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	3 cut(s)	344, 378, 629
HpySE526I	ACGT	3 cut(s)	144, 331, 387
Hsp92II	CATG	3 cut(s)	86, 412, 638
Kpn2I	TCCGGA	1 cut(s)	546
Kzo9I	GATC	1 cut(s)	543
LweI	GCATC	3 cut(s)	71, 475, 787
MabI	ACCWGGT	1 cut(s)	738
MaeI	CTAG	3 cut(s)	308, 698, 707
MaeII	ACGT	3 cut(s)	144, 331, 387
MaeIII	GTNAC	5 cut(s)	16, 42, 392, 524, 553
MalI	GATC	1 cut(s)	545
MboI	GATC	1 cut(s)	543
MboII	GAAGA	6 cut(s)	128, 139, 368, 380, 383, 467
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	543
MluCI	AATT	2 cut(s)	531, 867
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	5 cut(s)	112, 437, 472, 774, 830
MroI	TCCGGA	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	146
MslI	CAYNNNNRTG	3 cut(s)	81, 267, 639
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	4 cut(s)	22, 49, 252, 740
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	4 cut(s)	22, 49, 252, 740
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	1 cut(s)	543
NlaIII	CATG	3 cut(s)	86, 412, 638
NlaIV	GGNNCC	2 cut(s)	545, 614
NmuCI	GTSAC	2 cut(s)	392, 553
NspI	RCATGY	1 cut(s)	412
PciI	ACATGT	1 cut(s)	408
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	4 cut(s)	99, 241, 725, 850
PfoI	TCCNGGA	1 cut(s)	250
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
Ppu21I	YACGTR	1 cut(s)	388
PscI	ACATGT	1 cut(s)	408
Psp6I	CCWGG	4 cut(s)	20, 47, 250, 738
PspGI	CCWGG	4 cut(s)	20, 47, 250, 738
PspN4I	GGNNCC	2 cut(s)	545, 614
PspPI	GGNCC	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	543
RsaI	GTAC	4 cut(s)	386, 594, 645, 737
RsaNI	GTAC	4 cut(s)	385, 593, 644, 736
RseI	CAYNNNNRTG	3 cut(s)	81, 267, 639
Sau3AI	GATC	1 cut(s)	543
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	1 cut(s)	849
ScrFI	CCNGG	4 cut(s)	22, 49, 252, 740
SexAI	ACCWGGT	1 cut(s)	738
SfaNI	GCATC	3 cut(s)	71, 475, 787
SmiMI	CAYNNNNRTG	3 cut(s)	81, 267, 639
SmlI	CTYRAG	2 cut(s)	7, 496
SmoI	CTYRAG	2 cut(s)	7, 496
SnaBI	TACGTA	1 cut(s)	388
Sse9I	AATT	2 cut(s)	531, 867
SsiI	CCGC	2 cut(s)	430, 767
SspMI	CTAG	3 cut(s)	308, 698, 707
StyD4I	CCNGG	4 cut(s)	20, 47, 250, 738
StyI	CCWWGG	1 cut(s)	697
TaaI	ACNGT	2 cut(s)	42, 314
TaiI	ACGT	3 cut(s)	147, 334, 390
TasI	AATT	2 cut(s)	531, 867
TfiI	GAWTC	4 cut(s)	99, 241, 725, 850
TseFI	GTSAC	2 cut(s)	392, 553
Tsp45I	GTSAC	2 cut(s)	392, 553
TspDTI	ATGAA	5 cut(s)	194, 666, 774, 837, 842
XapI	RAATTY	1 cut(s)	867
XceI	RCATGY	1 cut(s)	412
XmaJI	CCTAGG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	3 cut(s)	308, 698, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.