Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Forward (+)

2849500 .. 2852060

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1036000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATTCCCATCATATATTATGGAGTGGAAGGTGATCTTGCAGGTGATGTTGCCTTCAGAATACTAGACTCAGTAAACAGCATCAGACGTAGAGCTATGCAAGATGTTCTCGAAGATGATATACGAGAAGAAACTAAGATTTATGTATGTGACATAAACCCTAACATGTTGAATGTTGGTAAAAAGCGGGCGTTGGAGAGAGGTATTGGAGAAGACAAATCCCTTCTATGGGTGGAGGGAGACGCAGAAGCCTTGTCTTTTGGAGATAATACAATGGATGGTTACACAATTGCATTTGGAATTAGGAATGTTACACACATAGAGAAAGTGTTGTCTGAGGCCTATCGAGTGCTAAAGCGCGGAGGAAGGTTCCTGTGCCTTGAACTGAGCCATGTAGACATTCCTGTATTCAAAGAATTCTATGATTTTTACTCATTCTCAGTCATTCCAGCCCTGGGAGAGCTCGTTGCAGGGGATAGAAAATCATACCAGTACTTGGTAGAGAGTATTGGTCGTTTCCCCCCACAGGAGAAGTTTGCTTCGATGATTGCGGATGCAGGATTCCAGCAGGTTGAATACGAGAACCTTGTTGGAGGTGTAGTTGCTATTCATTCGGGGTTGAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

210

Amino Acids

23.46

Weight (kDa)

4.91

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	15 - 208	8.7e-62	ubiE/COQ5 methyltransferase family
Methyltransf_25	PF13649	44 - 122	3.5e-11	Methyltransferase domain
Methyltransf_11	PF08241	45 - 126	2.2e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	32
Acc36I	ACCTGC	2 cut(s)	32, 559
AccB7I	CCANNNNNTGG	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	360
AciI	CCGC	3 cut(s)	187, 360, 551
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	5 cut(s)	228, 229, 455, 496, 526
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	172, 383, 412, 575, 622
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	2 cut(s)	95, 463
AluI	AGCT	2 cut(s)	95, 463
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	339
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	44, 56
BanII	GRGCYC	1 cut(s)	465
BarI	GAAGNNNNNNTAC	2 cut(s)	105, 137
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	465
BccI	CCATC	2 cut(s)	17, 272
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	2 cut(s)	32, 559
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	90, 544
BpiI	GAAGAC	1 cut(s)	219
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	453, 454
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 480, 585, 615
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 229, 455, 496, 526
Bse1I	ACTGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	453, 454
BseGI	GGATG	2 cut(s)	283, 559
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	5 cut(s)	228, 229, 455, 496, 526
BseMII	CTCAG	4 cut(s)	84, 327, 377, 453
BseNI	ACTGG	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	465
BslI	CCNNNNNNNGG	5 cut(s)	228, 229, 455, 496, 526
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	3 cut(s)	187, 360, 551
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	4 cut(s)	83, 328, 378, 452
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	371
BspMI	ACCTGC	2 cut(s)	32, 559
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	453, 454
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	5 cut(s)	70, 135, 336, 386, 439
BstF5I	GGATG	2 cut(s)	283, 559
BstFNI	CGCG	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	360
BstV2I	GAAGAC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	283, 559
BveI	ACCTGC	2 cut(s)	32, 559
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	360
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	2 cut(s)	166, 392
CviJI	RGCY	6 cut(s)	95, 251, 341, 390, 452, 463
CviKI_1	RGCY	6 cut(s)	95, 251, 341, 390, 452, 463
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	70, 135, 336, 386, 439
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Ecl136II	GAGCTC	1 cut(s)	463
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	2 cut(s)	169, 395
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	2 cut(s)	165, 391
FauI	CCCGC	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	396
FokI	GGATG	2 cut(s)	290, 566
FriOI	GRGCYC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	341
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	169, 395
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	4, 68, 561
HphI	GGTGA	2 cut(s)	44, 56
Hpy166II	GTNNAC	2 cut(s)	76, 397
Hpy188I	TCNGA	3 cut(s)	59, 86, 337
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	76, 397
HpyAV	CCTTC	4 cut(s)	23, 64, 233, 360
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	5 cut(s)	41, 100, 293, 470, 557
HpyF3I	CTNAG	5 cut(s)	70, 135, 336, 386, 439
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	169, 395
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	34
LweI	GCATC	2 cut(s)	90, 544
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	3 cut(s)	149, 281, 310
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	125, 140, 224
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	3 cut(s)	288, 300, 416
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	174, 571
MnlI	CCTC	5 cut(s)	194, 229, 331, 356, 587
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	360
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	169, 395
NlaIV	GGNNCC	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	1 cut(s)	169
PaqCI	CACCTGC	1 cut(s)	32
PasI	CCCWGGG	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	341
PciI	ACATGT	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	4, 561
PflMI	CCANNNNNTGG	1 cut(s)	496
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PscI	ACATGT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	371
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	465
Sau3AI	GATC	1 cut(s)	34
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	2 cut(s)	90, 544
Sse9I	AATT	3 cut(s)	288, 300, 416
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	3 cut(s)	187, 360, 551
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	465
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	111, 346, 542
TasI	AATT	3 cut(s)	288, 300, 416
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	4, 561
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	599
Van91I	CCANNNNNTGG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.